Rmu_sc0009975.1_g000010

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009975.1
OG0000229
Physical Location & Seq
Reverse (-)
50206 .. 51309
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009975.1_g000010.1.cds

Sequence Viewer

Length: 915 bp
atggagagaattacttggttcttcctggccgcggctagctgcttaactatggcagcagcactaaccaacactaatctcactacagatgagtctgctcttcttgctctcaaagctcatatcaccagtgatcctcataacatgatctccaccaactggtcaaccaccacccctgtttgcaactgggttggtgttacttgtggtgcacgccactttagagtggcagtcttgaacctctcttttatgggactcacgagcaccattcctccggagctcggtaacctatcgttccttgttgcgctaagcttgagaaataacagttttcatggtaccttgcctttggaattgggtcgtttgcgccgattgaagctcatcagtttcagattcaacaattttatgggagccattccatcatggtttgggtccttatccaaacttgaaaccttcgatttgtatggtaatcgattttcaggctccataccttctgccatcttcaacttaacagctctccaagtaatcaacctgagctacaaccagctatcaggtggcataccaagagaaattggaaacctaacaaagttgaaggagatataccttgatagaaataatttcaaagaaattccaaacgagattggagccttgaatcaactggagaggttgtttgtgcagttcaatgccttagaagggcatgttcctctcgctgtcttcaacatgtcttctttgattactatgactttctatagaaacagtttgaatggtagtcttccagagaatatatatcaacatcttccgagcattcaacagttggatttggctcagaaccagattgatggtccaattccatccaatattggcaacttaacccagataaggatgattgaccttggctggaactatttgacaggtattccaccataa

Protein Analysis

304

Amino Acids

33.79

Weight (kDa)

7.78

Isoelectric Point (pI)

25.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 326
AccB1I GGYRCC 1 cut(s) 326
AccB7I CCANNNNNTGG 1 cut(s) 153
AccII CGCG 1 cut(s) 32
AccIII TCCGGA 1 cut(s) 265
AciI CCGC 2 cut(s) 30, 32
AclWI GGATC 1 cut(s) 122
AcoI YGGCCR 1 cut(s) 27
AcsI RAATTY 1 cut(s) 615
AfaI GTAC 1 cut(s) 328
AfiI CCNNNNNNNGG 5 cut(s) 31, 153, 272, 681, 867
AflIII ACRYGT 1 cut(s) 708
AjnI CCWGG 1 cut(s) 24
AluBI AGCT 8 cut(s) 39, 113, 271, 303, 367, 503, 525, 535
AluI AGCT 8 cut(s) 39, 113, 271, 303, 367, 503, 525, 535
Alw21I GWGCWC 3 cut(s) 205, 257, 273
Alw44I GTGCAC 1 cut(s) 201
AlwI GGATC 1 cut(s) 122
Aor13HI TCCGGA 1 cut(s) 265
AoxI GGCC 1 cut(s) 27
ApaLI GTGCAC 1 cut(s) 201
ApeKI GCWGC 3 cut(s) 39, 53, 56
ApoI RAATTY 1 cut(s) 615
Asp718I GGTACC 1 cut(s) 326
AspLEI GCGC 2 cut(s) 298, 357
AspS9I GGNCC 2 cut(s) 420, 830
AsuHPI GGTGA 1 cut(s) 112
AsuNHI GCTAGC 1 cut(s) 35
AvaII GGWCC 2 cut(s) 420, 830
BaeGI GKGCMC 1 cut(s) 205
BanI GGYRCC 1 cut(s) 326
BanII GRGCYC 1 cut(s) 273
BarI GAAGNNNNNNTAC 2 cut(s) 572, 604
BauI CACGAG 1 cut(s) 250
BbsI GAAGAC 3 cut(s) 694, 705, 752
Bbv12I GWGCWC 3 cut(s) 205, 257, 273
BbvI GCAGC 3 cut(s) 26, 65, 68
BccI CCATC 4 cut(s) 415, 494, 821, 847
BciT130I CCWGG 1 cut(s) 26
BfaI CTAG 1 cut(s) 36
BfmI CTRYAG 2 cut(s) 81, 736
BisI GCNGC 5 cut(s) 30, 33, 40, 54, 57
BlpI GCTNAGC 1 cut(s) 299
BlsI GCNGC 5 cut(s) 31, 34, 41, 55, 58
Bme1390I CCNGG 1 cut(s) 26
Bme18I GGWCC 2 cut(s) 420, 830
BmgT120I GGNCC 2 cut(s) 420, 830
BmiI GGNNCC 5 cut(s) 328, 400, 421, 472, 634
BmrFI CCNGG 1 cut(s) 26
BmrI ACTGGG 1 cut(s) 190
BmtI GCTAGC 1 cut(s) 39
BmuI ACTGGG 1 cut(s) 190
BpiI GAAGAC 3 cut(s) 694, 705, 752
BpmI CTGGAG 1 cut(s) 668
Bpu10I CCTNAGC 1 cut(s) 521
Bpu1102I GCTNAGC 1 cut(s) 299
BpuEI CTTGAG 1 cut(s) 325
Bsa29I ATCGAT 1 cut(s) 460
BsaJI CCNNGG 2 cut(s) 30, 880
BsaWI WCCGGW 1 cut(s) 265
BsaXI ACNNNNNCTCC 6 cut(s) 128, 158, 247, 277, 641, 671
Bsc4I CCNNNNNNNGG 5 cut(s) 31, 153, 272, 681, 867
Bse1I ACTGG 4 cut(s) 123, 158, 185, 651
BseAI TCCGGA 1 cut(s) 265
BseBI CCWGG 1 cut(s) 26
BseCI ATCGAT 1 cut(s) 460
BseDI CCNNGG 2 cut(s) 30, 880
BseGI GGATG 2 cut(s) 839, 876
BseLI CCNNNNNNNGG 5 cut(s) 31, 153, 272, 681, 867
BseMII CTCAG 2 cut(s) 512, 827
BseNI ACTGG 4 cut(s) 123, 158, 185, 651
BseSI GKGCMC 1 cut(s) 205
BseXI GCAGC 3 cut(s) 26, 65, 68
BsgI GTGCAG 1 cut(s) 683
Bsh1236I CGCG 1 cut(s) 32
BshFI GGCC 1 cut(s) 29
BshNI GGYRCC 1 cut(s) 326
BshVI ATCGAT 1 cut(s) 460
BsiHKAI GWGCWC 3 cut(s) 205, 257, 273
BsiSI CCGG 1 cut(s) 266
BslFI GGGAC 1 cut(s) 258
BslI CCNNNNNNNGG 5 cut(s) 31, 153, 272, 681, 867
BsmFI GGGAC 1 cut(s) 258
BsmI GAATGC 1 cut(s) 792
BsnI GGCC 1 cut(s) 29
Bsp1286I GDGCHC 3 cut(s) 205, 257, 273
Bsp13I TCCGGA 1 cut(s) 265
Bsp143I GATC 2 cut(s) 127, 141
Bsp1720I GCTNAGC 1 cut(s) 299
BspACI CCGC 2 cut(s) 30, 32
BspANI GGCC 1 cut(s) 29
BspCNI CTCAG 2 cut(s) 513, 826
BspDI ATCGAT 1 cut(s) 460
BspEI TCCGGA 1 cut(s) 265
BspFNI CGCG 1 cut(s) 32
BspLI GGNNCC 5 cut(s) 328, 400, 421, 472, 634
BspOI GCTAGC 1 cut(s) 39
BspPI GGATC 1 cut(s) 122
BspQI GCTCTTC 1 cut(s) 102
BspT107I GGYRCC 1 cut(s) 326
BsrI ACTGG 4 cut(s) 123, 158, 185, 651
BssECI CCNNGG 2 cut(s) 30, 880
BssMI GATC 2 cut(s) 127, 141
BssSI CACGAG 1 cut(s) 250
BssT1I CCWWGG 1 cut(s) 880
Bst2BI CACGAG 1 cut(s) 250
Bst2UI CCWGG 1 cut(s) 26
Bst4CI ACNGT 3 cut(s) 317, 746, 801
Bst6I CTCTTC 1 cut(s) 102
BstC8I GCNNGC 2 cut(s) 37, 205
BstDEI CTNAG 4 cut(s) 299, 521, 676, 813
BstDSI CCRYGG 1 cut(s) 30
BstEII GGTNACC 1 cut(s) 275
BstF5I GGATG 2 cut(s) 839, 876
BstFNI CGCG 1 cut(s) 32
BstHHI GCGC 2 cut(s) 298, 357
BstKTI GATC 2 cut(s) 130, 144
BstMBI GATC 2 cut(s) 127, 141
BstMWI GCNNNNNNNGC 2 cut(s) 101, 110
BstNI CCWGG 1 cut(s) 26
BstNSI RCATGY 2 cut(s) 689, 712
BstPI GGTNACC 1 cut(s) 275
BstSCI CCNGG 1 cut(s) 24
BstSFI CTRYAG 2 cut(s) 81, 736
BstSLI GKGCMC 1 cut(s) 205
BstUI CGCG 1 cut(s) 32
BstV1I GCAGC 3 cut(s) 26, 65, 68
BstV2I GAAGAC 3 cut(s) 694, 705, 752
BstXI CCANNNNNNTGG 1 cut(s) 827
Bsu15I ATCGAT 1 cut(s) 460
BsuRI GGCC 1 cut(s) 29
BsuTUI ATCGAT 1 cut(s) 460
BtgI CCRYGG 1 cut(s) 30
BtsCI GGATG 2 cut(s) 839, 876
BtsIMutI CAGTG 1 cut(s) 130
Cac8I GCNNGC 2 cut(s) 37, 205
CfoI GCGC 2 cut(s) 298, 357
Cfr13I GGNCC 2 cut(s) 420, 830
Cfr42I CCGCGG 1 cut(s) 33
ClaI ATCGAT 1 cut(s) 460
Csp6I GTAC 1 cut(s) 327
CviAII CATG 5 cut(s) 139, 323, 411, 686, 709
CviQI GTAC 1 cut(s) 327
DdeI CTNAG 4 cut(s) 299, 521, 676, 813
DpnI GATC 2 cut(s) 129, 143
DpnII GATC 2 cut(s) 127, 141
EaeI YGGCCR 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
Ecl136II GAGCTC 1 cut(s) 271
Eco130I CCWWGG 1 cut(s) 880
Eco24I GRGCYC 1 cut(s) 273
Eco47I GGWCC 2 cut(s) 420, 830
Eco53kI GAGCTC 1 cut(s) 271
Eco91I GGTNACC 1 cut(s) 275
EcoICRI GAGCTC 1 cut(s) 271
EcoO109I RGGNCCY 1 cut(s) 420
EcoO65I GGTNACC 1 cut(s) 275
EcoRII CCWGG 1 cut(s) 24
EcoT14I CCWWGG 1 cut(s) 880
EcoT38I GRGCYC 1 cut(s) 273
ErhI CCWWGG 1 cut(s) 880
FaeI CATG 5 cut(s) 142, 326, 414, 689, 712
FaqI GGGAC 1 cut(s) 258
FatI CATG 5 cut(s) 138, 322, 410, 685, 708
Fnu4HI GCNGC 5 cut(s) 30, 33, 40, 54, 57
FokI GGATG 2 cut(s) 826, 883
FriOI GRGCYC 1 cut(s) 273
Fsp4HI GCNGC 5 cut(s) 30, 33, 40, 54, 57
FspBI CTAG 1 cut(s) 36
GlaI GCGC 2 cut(s) 297, 356
GluI GCNGC 5 cut(s) 30, 33, 40, 54, 57
GsuI CTGGAG 1 cut(s) 668
HaeIII GGCC 1 cut(s) 29
HapII CCGG 1 cut(s) 266
HhaI GCGC 2 cut(s) 298, 357
Hin1II CATG 5 cut(s) 142, 326, 414, 689, 712
Hin6I GCGC 2 cut(s) 296, 355
HinP1I GCGC 2 cut(s) 296, 355
HincII GTYRAC 1 cut(s) 159
HindII GTYRAC 1 cut(s) 159
HindIII AAGCTT 1 cut(s) 301
HinfI GANTC 4 cut(s) 89, 246, 381, 640
HpaII CCGG 1 cut(s) 266
HphI GGTGA 1 cut(s) 112
Hpy166II GTNNAC 2 cut(s) 159, 203
Hpy188I TCNGA 3 cut(s) 380, 789, 816
Hpy188III TCNNGA 4 cut(s) 226, 250, 266, 764
Hpy8I GTNNAC 2 cut(s) 159, 203
HpyAV CCTTC 4 cut(s) 451, 489, 574, 674
HpyCH4III ACNGT 3 cut(s) 317, 746, 801
HpyCH4V TGCA 3 cut(s) 177, 203, 664
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 110
HpyF3I CTNAG 4 cut(s) 299, 521, 676, 813
Hsp92II CATG 5 cut(s) 142, 326, 414, 689, 712
HspAI GCGC 2 cut(s) 296, 355
Kpn2I TCCGGA 1 cut(s) 265
KpnI GGTACC 1 cut(s) 330
KspI CCGCGG 1 cut(s) 33
Kzo9I GATC 2 cut(s) 127, 141
LguI GCTCTTC 1 cut(s) 102
LmnI GCTCC 4 cut(s) 268, 398, 476, 632
Lsp1109I GCAGC 3 cut(s) 26, 65, 68
MaeI CTAG 1 cut(s) 36
MaeIII GTNAC 2 cut(s) 190, 275
MalI GATC 2 cut(s) 129, 143
MboI GATC 2 cut(s) 127, 141
MboII GAAGA 7 cut(s) 13, 89, 481, 694, 705, 752, 776
MhlI GDGCHC 3 cut(s) 205, 257, 273
MluCI AATT 7 cut(s) 9, 341, 388, 558, 604, 615, 834
MlyI GAGTC 2 cut(s) 98, 240
MmeI TCCRAC 1 cut(s) 783
MnlI CCTC 5 cut(s) 141, 242, 273, 645, 702
MroI TCCGGA 1 cut(s) 265
MseI TTAA 3 cut(s) 44, 497, 857
MspA1I CMGCKG 1 cut(s) 32
MspI CCGG 1 cut(s) 266
MspR9I CCNGG 1 cut(s) 26
Mva1269I GAATGC 1 cut(s) 792
MvaI CCWGG 1 cut(s) 26
MvnI CGCG 1 cut(s) 32
MwoI GCNNNNNNNGC 2 cut(s) 101, 110
NdeII GATC 2 cut(s) 127, 141
NheI GCTAGC 1 cut(s) 35
NlaIII CATG 5 cut(s) 142, 326, 414, 689, 712
NlaIV GGNNCC 5 cut(s) 328, 400, 421, 472, 634
NspI RCATGY 2 cut(s) 689, 712
PciI ACATGT 1 cut(s) 708
PciSI GCTCTTC 1 cut(s) 102
PcsI WCGNNNNNNNCGW 1 cut(s) 355
PctI GAATGC 1 cut(s) 792
PfeI GAWTC 2 cut(s) 381, 640
PflMI CCANNNNNTGG 1 cut(s) 153
PkrI GCNGC 5 cut(s) 31, 34, 41, 55, 58
PleI GAGTC 2 cut(s) 97, 240
PpsI GAGTC 2 cut(s) 97, 240
PpuMI RGGWCCY 1 cut(s) 420
PscI ACATGT 1 cut(s) 708
Psp124BI GAGCTC 1 cut(s) 273
Psp5II RGGWCCY 1 cut(s) 420
Psp6I CCWGG 1 cut(s) 24
PspEI GGTNACC 1 cut(s) 275
PspGI CCWGG 1 cut(s) 24
PspN4I GGNNCC 5 cut(s) 328, 400, 421, 472, 634
PspPI GGNCC 2 cut(s) 420, 830
PspPPI RGGWCCY 1 cut(s) 420
RsaI GTAC 1 cut(s) 328
RsaNI GTAC 1 cut(s) 327
SacI GAGCTC 1 cut(s) 273
SacII CCGCGG 1 cut(s) 33
SapI GCTCTTC 1 cut(s) 102
SaqAI TTAA 3 cut(s) 44, 497, 857
SatI GCNGC 5 cut(s) 30, 33, 40, 54, 57
Sau3AI GATC 2 cut(s) 127, 141
Sau96I GGNCC 2 cut(s) 420, 830
SchI GAGTC 2 cut(s) 98, 240
ScrFI CCNGG 1 cut(s) 26
SduI GDGCHC 3 cut(s) 205, 257, 273
SfcI CTRYAG 2 cut(s) 81, 736
Sfr303I CCGCGG 1 cut(s) 33
SgrBI CCGCGG 1 cut(s) 33
SinI GGWCC 2 cut(s) 420, 830
SmlI CTYRAG 1 cut(s) 304
SmoI CTYRAG 1 cut(s) 304
Sse9I AATT 7 cut(s) 9, 341, 388, 558, 604, 615, 834
SsiI CCGC 2 cut(s) 30, 32
SspI AATATT 1 cut(s) 847
SspMI CTAG 1 cut(s) 36
SstI GAGCTC 1 cut(s) 273
StyD4I CCNGG 1 cut(s) 24
StyI CCWWGG 1 cut(s) 880
TaaI ACNGT 3 cut(s) 317, 746, 801
TaqI TCGA 2 cut(s) 444, 460
TasI AATT 7 cut(s) 9, 341, 388, 558, 604, 615, 834
TauI GCSGC 2 cut(s) 32, 35
TfiI GAWTC 2 cut(s) 381, 640
Tru1I TTAA 3 cut(s) 44, 497, 857
Tru9I TTAA 3 cut(s) 44, 497, 857
TscAI CASTG 1 cut(s) 130
TseI GCWGC 3 cut(s) 39, 53, 56
TspDTI ATGAA 1 cut(s) 311
TspRI CASTG 1 cut(s) 130
Van91I CCANNNNNTGG 1 cut(s) 153
VneI GTGCAC 1 cut(s) 201
VpaK11BI GGWCC 2 cut(s) 420, 830
XapI RAATTY 1 cut(s) 615
XceI RCATGY 2 cut(s) 689, 712
XcmI CCANNNNNNNNNTGG 1 cut(s) 539
XspI CTAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.