RchiOBHm_Chr7g0213321

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000229
Physical Location & Seq
Reverse (-)
30436415 .. 30437358
944 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19093

Sequence Viewer

Length: 483 bp
ATGCACATCTCTGTGACAATGCACACAATGAAGAGAACTCGGTTCTCCCTCATGTTGCTGTTACACTGTTGTATGTGTAGCTTTACTGGTGTTGTGGTAGCAGTACAAAACAAGAATGTCAACACAGACCAGTTGGCTCTTCTTGCTCTCAAAGCTCACATCACCAGTGATCCTCAGAAAATCATGACCAACTGGTCCACAGCCACCTCAGTCTGCAACTGGGTTGGCATTACTTGTGGTGCTCGCCACCTTCGAGTGGCGGTCTTGAATATCTCTTACTTTGATCTCACAGGAAGCATTCCTCCAGAGCTAGGAAACCTGTCATTTCTTGTTCAACTGGACTTCACCAATAACAGTTTCCGTGACACTTTGCCCATGGAGTTGTCTCGCTTGCATCGATTGAAGTTGATTAGCTTTGGATACAACAATTTTATTGCTACCATTTCATCTTGGTTTTGGTCCTTATCTAAACTTCAAACCTAG

Protein Analysis

160

Amino Acids

18.07

Weight (kDa)

9.36

Isoelectric Point (pI)

27.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 41 - 79 2.3e-11 Leucine rich repeat N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 193
AciI CCGC 1 cut(s) 260
AclWI GGATC 1 cut(s) 164
AfaI GTAC 1 cut(s) 105
AfiI CCNNNNNNNGG 2 cut(s) 256, 311
AgsI TTSAA 4 cut(s) 268, 335, 403, 476
AjuI GAANNNNNNNTTGG 2 cut(s) 341, 373
AluBI AGCT 4 cut(s) 81, 155, 310, 414
AluI AGCT 4 cut(s) 81, 155, 310, 414
Alw21I GWGCWC 1 cut(s) 244
Alw26I GTCTC 1 cut(s) 390
AlwI GGATC 1 cut(s) 164
AspS9I GGNCC 2 cut(s) 195, 459
AsuHPI GGTGA 2 cut(s) 154, 337
AvaII GGWCC 2 cut(s) 195, 459
Bbv12I GWGCWC 1 cut(s) 244
BciVI GTATCC 1 cut(s) 413
BcoDI GTCTC 1 cut(s) 390
BfaI CTAG 2 cut(s) 311, 481
BfuI GTATCC 1 cut(s) 413
Bme18I GGWCC 2 cut(s) 195, 459
BmgT120I GGNCC 2 cut(s) 195, 459
BmrI ACTGGG 1 cut(s) 229
BmsI GCATC 1 cut(s) 403
BmuI ACTGGG 1 cut(s) 229
BpmI CTGGAG 1 cut(s) 288
Bsa29I ATCGAT 1 cut(s) 397
BsaJI CCNNGG 1 cut(s) 375
Bsc4I CCNNNNNNNGG 2 cut(s) 256, 311
Bse1I ACTGG 6 cut(s) 91, 130, 165, 197, 224, 342
BseCI ATCGAT 1 cut(s) 397
BseDI CCNNGG 1 cut(s) 375
BseLI CCNNNNNNNGG 2 cut(s) 256, 311
BseMII CTCAG 2 cut(s) 188, 222
BseNI ACTGG 6 cut(s) 91, 130, 165, 197, 224, 342
BshVI ATCGAT 1 cut(s) 397
BsiHKAI GWGCWC 1 cut(s) 244
BslI CCNNNNNNNGG 2 cut(s) 256, 311
BsmAI GTCTC 1 cut(s) 390
BsmI GAATGC 1 cut(s) 297
Bsp1286I GDGCHC 1 cut(s) 244
Bsp143I GATC 2 cut(s) 169, 283
Bsp19I CCATGG 1 cut(s) 375
BspACI CCGC 1 cut(s) 260
BspCNI CTCAG 2 cut(s) 187, 221
BspDI ATCGAT 1 cut(s) 397
BspHI TCATGA 1 cut(s) 183
BspPI GGATC 1 cut(s) 164
BspQI GCTCTTC 1 cut(s) 144
BsrI ACTGG 6 cut(s) 91, 130, 165, 197, 224, 342
BssECI CCNNGG 1 cut(s) 375
BssMI GATC 2 cut(s) 169, 283
BssT1I CCWWGG 1 cut(s) 375
Bst4CI ACNGT 2 cut(s) 68, 356
Bst6I CTCTTC 2 cut(s) 26, 144
BstC8I GCNNGC 2 cut(s) 244, 392
BstDEI CTNAG 2 cut(s) 174, 208
BstDSI CCRYGG 1 cut(s) 375
BstKTI GATC 2 cut(s) 172, 286
BstMAI GTCTC 1 cut(s) 390
BstMBI GATC 2 cut(s) 169, 283
BstMWI GCNNNNNNNGC 2 cut(s) 143, 152
Bsu15I ATCGAT 1 cut(s) 397
BsuI GTATCC 1 cut(s) 413
BsuTUI ATCGAT 1 cut(s) 397
BtgI CCRYGG 1 cut(s) 375
BtsIMutI CAGTG 2 cut(s) 64, 172
Cac8I GCNNGC 2 cut(s) 244, 392
CciI TCATGA 1 cut(s) 183
Cfr13I GGNCC 2 cut(s) 195, 459
ClaI ATCGAT 1 cut(s) 397
Csp6I GTAC 1 cut(s) 104
CviAII CATG 3 cut(s) 52, 184, 376
CviJI RGCY 6 cut(s) 81, 137, 155, 203, 310, 414
CviKI_1 RGCY 6 cut(s) 81, 137, 155, 203, 310, 414
CviQI GTAC 1 cut(s) 104
DdeI CTNAG 2 cut(s) 174, 208
DpnI GATC 2 cut(s) 171, 285
DpnII GATC 2 cut(s) 169, 283
DrdI GACNNNNNNGTC 1 cut(s) 193
DseDI GACNNNNNNGTC 1 cut(s) 193
Eam1104I CTCTTC 2 cut(s) 26, 144
EarI CTCTTC 2 cut(s) 26, 144
Eco130I CCWWGG 1 cut(s) 375
Eco47I GGWCC 2 cut(s) 195, 459
EcoT14I CCWWGG 1 cut(s) 375
ErhI CCWWGG 1 cut(s) 375
FaeI CATG 3 cut(s) 55, 187, 379
FaiI YATR 4 cut(s) 53, 74, 185, 377
FatI CATG 3 cut(s) 51, 183, 375
FspBI CTAG 2 cut(s) 311, 481
GsuI CTGGAG 1 cut(s) 288
Hin1II CATG 3 cut(s) 55, 187, 379
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
HphI GGTGA 2 cut(s) 154, 337
Hpy166II GTNNAC 2 cut(s) 121, 198
Hpy188I TCNGA 1 cut(s) 177
Hpy188III TCNNGA 3 cut(s) 184, 265, 305
Hpy8I GTNNAC 2 cut(s) 121, 198
HpyAV CCTTC 1 cut(s) 260
HpyCH4III ACNGT 2 cut(s) 68, 356
HpyCH4V TGCA 4 cut(s) 4, 22, 216, 394
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 152
HpyF3I CTNAG 2 cut(s) 174, 208
Hsp92II CATG 3 cut(s) 55, 187, 379
Kzo9I GATC 2 cut(s) 169, 283
LguI GCTCTTC 1 cut(s) 144
LpnPI CCDG 9 cut(s) 72, 143, 178, 178, 205, 276, 318, 323, 332
LweI GCATC 1 cut(s) 403
MaeI CTAG 2 cut(s) 311, 481
MaeIII GTNAC 3 cut(s) 13, 60, 362
MalI GATC 2 cut(s) 171, 285
MboI GATC 2 cut(s) 169, 283
MboII GAAGA 2 cut(s) 43, 131
MhlI GDGCHC 1 cut(s) 244
MluCI AATT 1 cut(s) 427
MnlI CCTC 4 cut(s) 59, 183, 217, 312
MslI CAYNNNNRTG 1 cut(s) 11
Mva1269I GAATGC 1 cut(s) 297
MwoI GCNNNNNNNGC 2 cut(s) 143, 152
NcoI CCATGG 1 cut(s) 375
NdeII GATC 2 cut(s) 169, 283
NlaIII CATG 3 cut(s) 55, 187, 379
NmuCI GTSAC 2 cut(s) 13, 362
PagI TCATGA 1 cut(s) 183
PciSI GCTCTTC 1 cut(s) 144
PcsI WCGNNNNNNNCGW 2 cut(s) 250, 394
PctI GAATGC 1 cut(s) 297
PspPI GGNCC 2 cut(s) 195, 459
RsaI GTAC 1 cut(s) 105
RsaNI GTAC 1 cut(s) 104
RseI CAYNNNNRTG 1 cut(s) 11
SapI GCTCTTC 1 cut(s) 144
Sau3AI GATC 2 cut(s) 169, 283
Sau96I GGNCC 2 cut(s) 195, 459
SduI GDGCHC 1 cut(s) 244
SetI ASST 8 cut(s) 83, 157, 209, 252, 312, 321, 416, 482
SfaNI GCATC 1 cut(s) 403
SinI GGWCC 2 cut(s) 195, 459
SmiMI CAYNNNNRTG 1 cut(s) 11
Sse9I AATT 1 cut(s) 427
SsiI CCGC 1 cut(s) 260
SspMI CTAG 2 cut(s) 311, 481
StyI CCWWGG 1 cut(s) 375
TaaI ACNGT 2 cut(s) 68, 356
TaqI TCGA 2 cut(s) 253, 397
TasI AATT 1 cut(s) 427
TatI WGTACW 1 cut(s) 103
TscAI CASTG 2 cut(s) 71, 172
TseFI GTSAC 2 cut(s) 13, 362
Tsp45I GTSAC 2 cut(s) 13, 362
TspDTI ATGAA 2 cut(s) 44, 435
TspGWI ACGGA 1 cut(s) 350
TspRI CASTG 2 cut(s) 71, 172
VpaK11BI GGWCC 2 cut(s) 195, 459
XspI CTAG 2 cut(s) 311, 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.