Rmu_sc0009151.1_g000001

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009151.1
OG0000229
Physical Location & Seq
Forward (+)
2874 .. 3752
879 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009151.1_g000001.1.cds

Sequence Viewer

Length: 783 bp
atggtaacaagtcaatttttcctcttgcaaacaaggttgttgctggtatacttctgttgtattgccagctttgctatagtggtagcagtacaaaccagcaatttctccacagatgagtctgctcttctttctctcaaagccagcatcaccagtgaaggtcaaaacatgatcttcaccaactggtccaccaacaacatttgccactgggctggggttacttgtggtgcaagccaccgcagagtcgaggtcttggacctgtcttactttggtctttcaggcaccattcctgcggagctaggtgacctgtcatttcttgttgatctggacttcacaaataacagcttccaaggtcccttgccccaagaattgtctcgtctacacaggttgaagttccttagctttggattcaacaactttgggggaacaattccatcatggtttgggtccttgtccaaacttcaaaccttggatttgtacggtaatcaattttcaggttccatgcccgctaccatcttcaacttatctgcactacaagtaatggatctcaaaaataatcatctatcgggtagcataccagcagaaatcgggaacttaacactgcttaatagggatggcaatggggcgggttggggatggggatcacaataccaccctcatccccggagtaattcttcacccccatccccaccccaatccccaataaaaatatattggagattccccgtccccatccccactggggatgaagcctccaaacctgccctaggggattttagaaaatag

Protein Analysis

260

Amino Acids

28.51

Weight (kDa)

6.58

Isoelectric Point (pI)

31.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 766
AccB1I GGYRCC 1 cut(s) 278
AccI GTMKAC 2 cut(s) 48, 376
AciI CCGC 4 cut(s) 235, 290, 504, 623
AclWI GGATC 2 cut(s) 549, 646
AfaI GTAC 2 cut(s) 90, 476
AfiI CCNNNNNNNGG 2 cut(s) 739, 764
AgsI TTSAA 4 cut(s) 388, 409, 461, 517
AluBI AGCT 4 cut(s) 69, 295, 342, 399
AluI AGCT 4 cut(s) 69, 295, 342, 399
Alw26I GTCTC 1 cut(s) 375
AlwI GGATC 2 cut(s) 549, 646
AspA2I CCTAGG 1 cut(s) 763
AspS9I GGNCC 4 cut(s) 183, 253, 350, 444
AsuC2I CCSGG 1 cut(s) 661
AsuHPI GGTGA 4 cut(s) 139, 166, 311, 666
AvaII GGWCC 4 cut(s) 183, 253, 350, 444
AvrII CCTAGG 1 cut(s) 763
BanI GGYRCC 1 cut(s) 278
BccI CCATC 6 cut(s) 439, 518, 605, 627, 688, 737
BcnI CCSGG 1 cut(s) 661
BcoDI GTCTC 1 cut(s) 375
BfaI CTAG 2 cut(s) 296, 764
BfmI CTRYAG 1 cut(s) 75
BfuAI ACCTGC 1 cut(s) 766
BlnI CCTAGG 1 cut(s) 763
Bme1390I CCNGG 1 cut(s) 661
Bme18I GGWCC 4 cut(s) 183, 253, 350, 444
BmgT120I GGNCC 4 cut(s) 183, 253, 350, 444
BmiI GGNNCC 4 cut(s) 280, 352, 445, 496
BmrFI CCNGG 1 cut(s) 661
BmrI ACTGGG 2 cut(s) 214, 747
BmsI GCATC 1 cut(s) 153
BmuI ACTGGG 2 cut(s) 214, 747
Bpu10I CCTNAGC 1 cut(s) 395
BpuMI CCSGG 1 cut(s) 661
BsaBI GATNNNNATC 1 cut(s) 637
BsaJI CCNNGG 4 cut(s) 346, 465, 659, 763
Bsc4I CCNNNNNNNGG 2 cut(s) 739, 764
Bse1I ACTGG 4 cut(s) 150, 185, 209, 742
Bse3DI GCAATG 1 cut(s) 622
Bse8I GATNNNNATC 1 cut(s) 637
BseDI CCNNGG 4 cut(s) 346, 465, 659, 763
BseGI GGATG 6 cut(s) 616, 638, 655, 680, 729, 748
BseJI GATNNNNATC 1 cut(s) 637
BseLI CCNNNNNNNGG 2 cut(s) 739, 764
BseMI GCAATG 1 cut(s) 622
BseNI ACTGG 4 cut(s) 150, 185, 209, 742
BseYI CCCAGC 1 cut(s) 209
BsgI GTGCAG 1 cut(s) 510
BshNI GGYRCC 1 cut(s) 278
BsiSI CCGG 1 cut(s) 661
BslFI GGGAC 2 cut(s) 336, 710
BslI CCNNNNNNNGG 2 cut(s) 739, 764
BsmAI GTCTC 1 cut(s) 375
BsmFI GGGAC 2 cut(s) 336, 710
Bsp143I GATC 4 cut(s) 168, 319, 541, 638
BspACI CCGC 4 cut(s) 235, 290, 504, 623
BspLI GGNNCC 4 cut(s) 280, 352, 445, 496
BspMI ACCTGC 1 cut(s) 766
BspPI GGATC 2 cut(s) 549, 646
BspQI GCTCTTC 1 cut(s) 129
BspT107I GGYRCC 1 cut(s) 278
BsrDI GCAATG 1 cut(s) 622
BsrI ACTGG 4 cut(s) 150, 185, 209, 742
BssECI CCNNGG 4 cut(s) 346, 465, 659, 763
BssMI GATC 4 cut(s) 168, 319, 541, 638
BssNAI GTATAC 1 cut(s) 49
BssT1I CCWWGG 3 cut(s) 346, 465, 763
Bst1107I GTATAC 1 cut(s) 49
Bst4CI ACNGT 1 cut(s) 479
Bst6I CTCTTC 1 cut(s) 129
BstC8I GCNNGC 4 cut(s) 67, 142, 229, 504
BstDEI CTNAG 1 cut(s) 395
BstEII GGTNACC 1 cut(s) 299
BstENI CCTNNNNNAGG 1 cut(s) 762
BstF5I GGATG 6 cut(s) 616, 638, 655, 680, 729, 748
BstKTI GATC 4 cut(s) 171, 322, 544, 641
BstMAI GTCTC 1 cut(s) 375
BstMBI GATC 4 cut(s) 168, 319, 541, 638
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstPI GGTNACC 1 cut(s) 299
BstSCI CCNGG 1 cut(s) 659
BstSFI CTRYAG 1 cut(s) 75
BstX2I RGATCY 1 cut(s) 541
BstXI CCANNNNNNTGG 1 cut(s) 209
BstYI RGATCY 1 cut(s) 541
BstZ17I GTATAC 1 cut(s) 49
BtsCI GGATG 6 cut(s) 616, 638, 655, 680, 729, 748
BtsI GCAGTG 1 cut(s) 596
BtsIMutI CAGTG 4 cut(s) 157, 202, 596, 735
BveI ACCTGC 1 cut(s) 766
Cac8I GCNNGC 4 cut(s) 67, 142, 229, 504
Cfr13I GGNCC 4 cut(s) 183, 253, 350, 444
Csp6I GTAC 2 cut(s) 89, 475
CviAII CATG 3 cut(s) 166, 435, 499
CviJI RGCY 8 cut(s) 69, 140, 209, 231, 295, 342, 399, 749
CviKI_1 RGCY 8 cut(s) 69, 140, 209, 231, 295, 342, 399, 749
CviQI GTAC 2 cut(s) 89, 475
DdeI CTNAG 1 cut(s) 395
DpnI GATC 4 cut(s) 170, 321, 543, 640
DpnII GATC 4 cut(s) 168, 319, 541, 638
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
Eco130I CCWWGG 3 cut(s) 346, 465, 763
Eco47I GGWCC 4 cut(s) 183, 253, 350, 444
Eco91I GGTNACC 1 cut(s) 299
EcoNI CCTNNNNNAGG 1 cut(s) 762
EcoO109I RGGNCCY 2 cut(s) 350, 444
EcoO65I GGTNACC 1 cut(s) 299
EcoT14I CCWWGG 3 cut(s) 346, 465, 763
ErhI CCWWGG 3 cut(s) 346, 465, 763
FaeI CATG 3 cut(s) 169, 438, 502
FaiI YATR 7 cut(s) 49, 77, 167, 436, 500, 572, 709
FaqI GGGAC 2 cut(s) 336, 710
FatI CATG 3 cut(s) 165, 434, 498
FauI CCCGC 2 cut(s) 511, 616
FblI GTMKAC 2 cut(s) 48, 376
FokI GGATG 6 cut(s) 623, 642, 645, 667, 716, 755
FspBI CTAG 2 cut(s) 296, 764
GsaI CCCAGC 1 cut(s) 213
HapII CCGG 1 cut(s) 661
Hin1II CATG 3 cut(s) 169, 438, 502
HinfI GANTC 4 cut(s) 116, 240, 405, 717
HpaII CCGG 1 cut(s) 661
HphI GGTGA 4 cut(s) 139, 166, 311, 666
Hpy166II GTNNAC 3 cut(s) 49, 186, 377
Hpy188III TCNNGA 2 cut(s) 323, 586
Hpy8I GTNNAC 3 cut(s) 49, 186, 377
HpyAV CCTTC 1 cut(s) 149
HpyCH4III ACNGT 1 cut(s) 479
HpyCH4V TGCA 3 cut(s) 28, 227, 527
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 1 cut(s) 395
Hsp92II CATG 3 cut(s) 169, 438, 502
Kzo9I GATC 4 cut(s) 168, 319, 541, 638
LguI GCTCTTC 1 cut(s) 129
LmnI GCTCC 1 cut(s) 292
LweI GCATC 1 cut(s) 153
MaeI CTAG 2 cut(s) 296, 764
MaeIII GTNAC 3 cut(s) 4, 214, 299
MalI GATC 4 cut(s) 170, 321, 543, 640
MboI GATC 4 cut(s) 168, 319, 541, 638
MboII GAAGA 4 cut(s) 116, 163, 505, 663
MflI RGATCY 1 cut(s) 541
MluCI AATT 6 cut(s) 14, 100, 365, 426, 485, 667
MlyI GAGTC 2 cut(s) 125, 249
MnlI CCTC 4 cut(s) 32, 238, 663, 760
MseI TTAA 2 cut(s) 593, 603
MspI CCGG 1 cut(s) 661
MspR9I CCNGG 1 cut(s) 661
MwoI GCNNNNNNNGC 1 cut(s) 71
NciI CCSGG 1 cut(s) 661
NdeII GATC 4 cut(s) 168, 319, 541, 638
NlaIII CATG 3 cut(s) 169, 438, 502
NlaIV GGNNCC 4 cut(s) 280, 352, 445, 496
NmuCI GTSAC 1 cut(s) 299
PciSI GCTCTTC 1 cut(s) 129
PfeI GAWTC 2 cut(s) 405, 717
PleI GAGTC 2 cut(s) 124, 248
PpsI GAGTC 2 cut(s) 124, 248
PpuMI RGGWCCY 2 cut(s) 350, 444
Psp5II RGGWCCY 2 cut(s) 350, 444
PspEI GGTNACC 1 cut(s) 299
PspFI CCCAGC 1 cut(s) 209
PspN4I GGNNCC 4 cut(s) 280, 352, 445, 496
PspPI GGNCC 4 cut(s) 183, 253, 350, 444
PspPPI RGGWCCY 2 cut(s) 350, 444
PsuI RGATCY 1 cut(s) 541
RsaI GTAC 2 cut(s) 90, 476
RsaNI GTAC 2 cut(s) 89, 475
SapI GCTCTTC 1 cut(s) 129
SaqAI TTAA 2 cut(s) 593, 603
Sau3AI GATC 4 cut(s) 168, 319, 541, 638
Sau96I GGNCC 4 cut(s) 183, 253, 350, 444
SchI GAGTC 2 cut(s) 125, 249
ScrFI CCNGG 1 cut(s) 661
SfaNI GCATC 1 cut(s) 153
SfcI CTRYAG 1 cut(s) 75
SinI GGWCC 4 cut(s) 183, 253, 350, 444
Sse9I AATT 6 cut(s) 14, 100, 365, 426, 485, 667
SsiI CCGC 4 cut(s) 235, 290, 504, 623
SspMI CTAG 2 cut(s) 296, 764
StyD4I CCNGG 1 cut(s) 659
StyI CCWWGG 3 cut(s) 346, 465, 763
TaaI ACNGT 1 cut(s) 479
TaqI TCGA 1 cut(s) 243
TasI AATT 6 cut(s) 14, 100, 365, 426, 485, 667
TatI WGTACW 1 cut(s) 88
TfiI GAWTC 2 cut(s) 405, 717
Tru1I TTAA 2 cut(s) 593, 603
Tru9I TTAA 2 cut(s) 593, 603
TscAI CASTG 4 cut(s) 157, 209, 603, 742
TseFI GTSAC 1 cut(s) 299
Tsp45I GTSAC 1 cut(s) 299
TspDTI ATGAA 1 cut(s) 759
TspRI CASTG 4 cut(s) 157, 209, 603, 742
VpaK11BI GGWCC 4 cut(s) 183, 253, 350, 444
XagI CCTNNNNNAGG 1 cut(s) 762
XmaJI CCTAGG 1 cut(s) 763
XmiI GTMKAC 2 cut(s) 48, 376
XspI CTAG 2 cut(s) 296, 764
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.