RchiOBHm_Chr2g0114031

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000229
Physical Location & Seq
Reverse (-)
26104561 .. 26106644
2084 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48732

Sequence Viewer

Length: 882 bp
ATGGAGAGAGTTACTTGGTTCTTTCTTGAATACTTAATATGTTATACGGTGGCTAGCTACTTAACTATGGCGGCACAAACCAAGCTTAACATCACCACAGACCGGTCTGCTCTTCTTGCCCTCAAAGCCCGTATTACCAGTGACCCTCAAAACATGATCTTCACCAACTGGTCAACCTCTACTCCTATTTGCAACTGGGTTGGGGTCACTTGTGGTGCACGCCATCATCGAGTTGCAGACTTGAACCTCTCTTACTTTGGTCTCACAGGCACCATTCCTCCGGAATTAGGAAACTTACCATTTCTTGTTAATATGGACTTCAGCAATAACAGTTTCCATGGTATATTGCCTCAGGAATTGGATCGCTTGTGTCGGTTGAAGTTTATCAGCTTGGGAAACAACAAGTTCACGGGAGTCATTCCATCATGGTTTGGGTCCTTATTCAAACTTCAAGTATTCAATTTGTTTGGTAATCAATTTTCAGGTTCCGTACCAGCTACAATCTTCAACTTACCTGCTCTGCAAAAAATAGATTTGAGTGATAACCAACTCTCAGAAATTCCAAATGAGATCGGCACTTTGAATCATCTGGAAAAATTGTATGTGCAACATAATGCCTTAAAAGGGCCTATCCCTATGACTATCTTCAACATGTCATCTTTGACTATTGTAACTTTCTATGGTAACAATTTGAATGGTAGAATTCATGACAATATTTGTCAAAATCTTCTGAATATTCAAGCGTTGTATTTGGGTGCCAATCAGTTTAATGGTCCAATTCCTTCCATATTTGGGCAATGCAAACAACTTCTTTCTTTAAACTTGGAGCTTAACTGGTTGACAGGTATTCATAATATCAATTGCATATATTTAATCACTTAA

Protein Analysis

293

Amino Acids

32.9

Weight (kDa)

7.62

Isoelectric Point (pI)

24.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 33 - 71 9.2e-11 Leucine rich repeat N-terminal domain
LRR_8 PF13855 125 - 184 5.5e-10 Leucine rich repeat
LRR_14 PF23598 145 - 226 2.1e-08 Leucine-rich repeat region
LRR_8 PF13855 165 - 207 2.2e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 523
AccB1I GGYRCC 2 cut(s) 269, 755
AccIII TCCGGA 1 cut(s) 280
AciI CCGC 1 cut(s) 71
AclWI GGATC 1 cut(s) 369
AcsI RAATTY 2 cut(s) 558, 702
AcuI CTGAAG 1 cut(s) 304
AfaI GTAC 1 cut(s) 492
AfiI CCNNNNNNNGG 4 cut(s) 102, 287, 624, 792
AflIII ACRYGT 1 cut(s) 651
AgeI ACCGGT 1 cut(s) 102
AluBI AGCT 5 cut(s) 57, 85, 390, 497, 829
AluI AGCT 5 cut(s) 57, 85, 390, 497, 829
Alw21I GWGCWC 1 cut(s) 220
Alw26I GTCTC 1 cut(s) 266
Alw44I GTGCAC 1 cut(s) 216
AlwI GGATC 1 cut(s) 369
Aor13HI TCCGGA 1 cut(s) 280
AoxI GGCC 1 cut(s) 626
ApaLI GTGCAC 1 cut(s) 216
ApoI RAATTY 2 cut(s) 558, 702
AsiGI ACCGGT 1 cut(s) 102
AspS9I GGNCC 3 cut(s) 435, 626, 773
AsuHPI GGTGA 2 cut(s) 85, 154
AsuNHI GCTAGC 1 cut(s) 53
AvaII GGWCC 2 cut(s) 435, 773
AxyI CCTNAGG 1 cut(s) 351
BaeGI GKGCMC 1 cut(s) 220
BanI GGYRCC 2 cut(s) 269, 755
Bbv12I GWGCWC 1 cut(s) 220
BccI CCATC 2 cut(s) 231, 430
BcoDI GTCTC 1 cut(s) 266
BfaI CTAG 1 cut(s) 54
BfuAI ACCTGC 1 cut(s) 523
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
Bme18I GGWCC 2 cut(s) 435, 773
BmgT120I GGNCC 3 cut(s) 435, 626, 773
BmiI GGNNCC 4 cut(s) 271, 436, 487, 757
BmrI ACTGGG 1 cut(s) 205
BmtI GCTAGC 1 cut(s) 57
BmuI ACTGGG 1 cut(s) 205
BsaI GGTCTC 1 cut(s) 266
BsaJI CCNNGG 1 cut(s) 337
BsaWI WCCGGW 2 cut(s) 102, 280
BsaXI ACNNNNNCTCC 4 cut(s) 166, 196, 262, 292
Bsc4I CCNNNNNNNGG 4 cut(s) 102, 287, 624, 792
Bse118I RCCGGY 1 cut(s) 102
Bse1I ACTGG 4 cut(s) 138, 173, 200, 839
Bse21I CCTNAGG 1 cut(s) 351
Bse3DI GCAATG 1 cut(s) 803
BseAI TCCGGA 1 cut(s) 280
BseDI CCNNGG 1 cut(s) 337
BseLI CCNNNNNNNGG 4 cut(s) 102, 287, 624, 792
BseMI GCAATG 1 cut(s) 803
BseMII CTCAG 2 cut(s) 365, 567
BseNI ACTGG 4 cut(s) 138, 173, 200, 839
BseSI GKGCMC 1 cut(s) 220
BshFI GGCC 1 cut(s) 628
BshNI GGYRCC 2 cut(s) 269, 755
BshTI ACCGGT 1 cut(s) 102
BsiHKAI GWGCWC 1 cut(s) 220
BsiSI CCGG 2 cut(s) 103, 281
BslI CCNNNNNNNGG 4 cut(s) 102, 287, 624, 792
BsmAI GTCTC 1 cut(s) 266
BsnI GGCC 1 cut(s) 628
Bso31I GGTCTC 1 cut(s) 266
Bsp1286I GDGCHC 1 cut(s) 220
Bsp13I TCCGGA 1 cut(s) 280
Bsp143I GATC 3 cut(s) 156, 361, 570
Bsp19I CCATGG 1 cut(s) 337
BspACI CCGC 1 cut(s) 71
BspANI GGCC 1 cut(s) 628
BspCNI CTCAG 2 cut(s) 364, 566
BspEI TCCGGA 1 cut(s) 280
BspHI TCATGA 1 cut(s) 706
BspLI GGNNCC 4 cut(s) 271, 436, 487, 757
BspMI ACCTGC 1 cut(s) 523
BspOI GCTAGC 1 cut(s) 57
BspPI GGATC 1 cut(s) 369
BspQI GCTCTTC 1 cut(s) 117
BspT107I GGYRCC 2 cut(s) 269, 755
BspTNI GGTCTC 1 cut(s) 266
BsrDI GCAATG 1 cut(s) 803
BsrFI RCCGGY 1 cut(s) 102
BsrI ACTGG 4 cut(s) 138, 173, 200, 839
BssAI RCCGGY 1 cut(s) 102
BssECI CCNNGG 1 cut(s) 337
BssMI GATC 3 cut(s) 156, 361, 570
BssT1I CCWWGG 1 cut(s) 337
Bst4CI ACNGT 2 cut(s) 49, 332
Bst6I CTCTTC 1 cut(s) 117
BstC8I GCNNGC 2 cut(s) 55, 220
BstDEI CTNAG 2 cut(s) 351, 553
BstDSI CCRYGG 1 cut(s) 337
BstKTI GATC 3 cut(s) 159, 364, 573
BstMAI GTCTC 1 cut(s) 266
BstMBI GATC 3 cut(s) 156, 361, 570
BstMWI GCNNNNNNNGC 2 cut(s) 116, 125
BstNSI RCATGY 1 cut(s) 655
BstSLI GKGCMC 1 cut(s) 220
Bsu36I CCTNAGG 1 cut(s) 351
BsuRI GGCC 1 cut(s) 628
BtgI CCRYGG 1 cut(s) 337
BtsIMutI CAGTG 1 cut(s) 145
BveI ACCTGC 1 cut(s) 523
Cac8I GCNNGC 2 cut(s) 55, 220
CciI TCATGA 1 cut(s) 706
Cfr10I RCCGGY 1 cut(s) 102
Cfr13I GGNCC 3 cut(s) 435, 626, 773
Csp6I GTAC 1 cut(s) 491
CspAI ACCGGT 1 cut(s) 102
CviAII CATG 5 cut(s) 154, 338, 426, 652, 707
CviJI RGCY 8 cut(s) 53, 57, 85, 128, 390, 497, 628, 829
CviKI_1 RGCY 8 cut(s) 53, 57, 85, 128, 390, 497, 628, 829
CviQI GTAC 1 cut(s) 491
DdeI CTNAG 2 cut(s) 351, 553
DpnI GATC 3 cut(s) 158, 363, 572
DpnII GATC 3 cut(s) 156, 361, 570
DraI TTTAAA 1 cut(s) 819
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Eco130I CCWWGG 1 cut(s) 337
Eco31I GGTCTC 1 cut(s) 266
Eco47I GGWCC 2 cut(s) 435, 773
Eco57I CTGAAG 1 cut(s) 304
Eco81I CCTNAGG 1 cut(s) 351
EcoO109I RGGNCCY 2 cut(s) 435, 626
EcoRI GAATTC 1 cut(s) 702
EcoT14I CCWWGG 1 cut(s) 337
ErhI CCWWGG 1 cut(s) 337
FaeI CATG 5 cut(s) 157, 341, 429, 655, 710
FatI CATG 5 cut(s) 153, 337, 425, 651, 706
Fnu4HI GCNGC 1 cut(s) 72
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 1 cut(s) 54
GluI GCNGC 1 cut(s) 72
HaeIII GGCC 1 cut(s) 628
HapII CCGG 2 cut(s) 103, 281
Hin1II CATG 5 cut(s) 157, 341, 429, 655, 710
HincII GTYRAC 2 cut(s) 174, 840
HindII GTYRAC 2 cut(s) 174, 840
HindIII AAGCTT 1 cut(s) 83
HinfI GANTC 2 cut(s) 414, 583
HpaII CCGG 2 cut(s) 103, 281
HphI GGTGA 2 cut(s) 85, 154
Hpy166II GTNNAC 4 cut(s) 174, 218, 408, 840
Hpy188I TCNGA 2 cut(s) 556, 732
Hpy188III TCNNGA 5 cut(s) 26, 281, 353, 590, 707
Hpy8I GTNNAC 4 cut(s) 174, 218, 408, 840
HpyAV CCTTC 1 cut(s) 792
HpyCH4III ACNGT 2 cut(s) 49, 332
HpyCH4V TGCA 7 cut(s) 192, 218, 236, 523, 607, 801, 864
HpyF10VI GCNNNNNNNGC 2 cut(s) 116, 125
HpyF3I CTNAG 2 cut(s) 351, 553
Hsp92II CATG 5 cut(s) 157, 341, 429, 655, 710
Kpn2I TCCGGA 1 cut(s) 280
Kzo9I GATC 3 cut(s) 156, 361, 570
LguI GCTCTTC 1 cut(s) 117
LmnI GCTCC 1 cut(s) 826
MaeI CTAG 1 cut(s) 54
MaeIII GTNAC 5 cut(s) 10, 140, 205, 670, 683
MalI GATC 3 cut(s) 158, 363, 572
MboI GATC 3 cut(s) 156, 361, 570
MboII GAAGA 5 cut(s) 104, 151, 496, 637, 719
MfeI CAATTG 1 cut(s) 859
MhlI GDGCHC 1 cut(s) 220
MlyI GAGTC 1 cut(s) 423
MnlI CCTC 6 cut(s) 131, 156, 187, 257, 288, 360
MroI TCCGGA 1 cut(s) 280
MspI CCGG 2 cut(s) 103, 281
MunI CAATTG 1 cut(s) 859
MwoI GCNNNNNNNGC 2 cut(s) 116, 125
NcoI CCATGG 1 cut(s) 337
NdeII GATC 3 cut(s) 156, 361, 570
NheI GCTAGC 1 cut(s) 53
NlaIII CATG 5 cut(s) 157, 341, 429, 655, 710
NlaIV GGNNCC 4 cut(s) 271, 436, 487, 757
NmuCI GTSAC 2 cut(s) 140, 205
NspI RCATGY 1 cut(s) 655
PagI TCATGA 1 cut(s) 706
PciI ACATGT 1 cut(s) 651
PciSI GCTCTTC 1 cut(s) 117
PcsI WCGNNNNNNNCGW 1 cut(s) 226
PfeI GAWTC 1 cut(s) 583
PinAI ACCGGT 1 cut(s) 102
PkrI GCNGC 1 cut(s) 73
PleI GAGTC 1 cut(s) 422
PpsI GAGTC 1 cut(s) 422
PpuMI RGGWCCY 1 cut(s) 435
PscI ACATGT 1 cut(s) 651
Psp5II RGGWCCY 1 cut(s) 435
PspN4I GGNNCC 4 cut(s) 271, 436, 487, 757
PspPI GGNCC 3 cut(s) 435, 626, 773
PspPPI RGGWCCY 1 cut(s) 435
PsrI GAACNNNNNNTAC 2 cut(s) 236, 268
RsaI GTAC 1 cut(s) 492
RsaNI GTAC 1 cut(s) 491
SapI GCTCTTC 1 cut(s) 117
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 3 cut(s) 156, 361, 570
Sau96I GGNCC 3 cut(s) 435, 626, 773
SchI GAGTC 1 cut(s) 423
SduI GDGCHC 1 cut(s) 220
SinI GGWCC 2 cut(s) 435, 773
SsiI CCGC 1 cut(s) 71
SspI AATATT 2 cut(s) 715, 736
SspMI CTAG 1 cut(s) 54
StyI CCWWGG 1 cut(s) 337
TaaI ACNGT 2 cut(s) 49, 332
TaqI TCGA 1 cut(s) 229
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 1 cut(s) 583
TscAI CASTG 1 cut(s) 145
TseFI GTSAC 2 cut(s) 140, 205
Tsp45I GTSAC 2 cut(s) 140, 205
TspDTI ATGAA 2 cut(s) 695, 839
TspGWI ACGGA 1 cut(s) 478
TspRI CASTG 1 cut(s) 145
VneI GTGCAC 1 cut(s) 216
VpaK11BI GGWCC 2 cut(s) 435, 773
XapI RAATTY 2 cut(s) 558, 702
XceI RCATGY 1 cut(s) 655
XspI CTAG 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.