Rw2G018460

Leucine rich repeat

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
23847851 .. 23849682
1832 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G018460.1

Sequence Viewer

Length: 387 bp
ATGTTTGAGATTCCAAATGAGATCGGAGCATTGAATCAGCTAGAAAAGTTGTTTGTGCAAGAAAATGCCTTAAAAGGGCCTATTCCTATGAGTGTCTTCAATATGTCATCTTTGACTACTGTAACTTTCTATGGAAACTACTTGAATGGTAGAATTCCTGACAATATATGTCAACATCTTCCAAATATTCAAGGGTTGAACTTGGCTGGCAATCAGTTTGACGGTCTACTTCCGTCTAAGTTATGGCAATGCAAACAACTTCTTACTTTGGAGTTGGGGGATAACAAGTTTAGTGGAAGCATACCCAAAGGTATTGGGAACTTAACGCAGATAAAGAGGATTAACCTTGTACTGTACCATATGAGTTTGGTTATCTTCCAAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling

Protein Analysis

128

Amino Acids

14.32

Weight (kDa)

7.78

Isoelectric Point (pI)

35.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 226
AcsI RAATTY 2 cut(s) 153, 381
AfaI GTAC 2 cut(s) 351, 356
AfiI CCNNNNNNNGG 1 cut(s) 75
AgsI TTSAA 5 cut(s) 34, 100, 145, 191, 199
AluBI AGCT 1 cut(s) 40
AluI AGCT 1 cut(s) 40
AoxI GGCC 1 cut(s) 77
ApoI RAATTY 2 cut(s) 153, 381
AspS9I GGNCC 1 cut(s) 77
BbsI GAAGAC 1 cut(s) 88
BfaI CTAG 1 cut(s) 41
BmgT120I GGNCC 1 cut(s) 77
BpiI GAAGAC 1 cut(s) 88
Bsc4I CCNNNNNNNGG 1 cut(s) 75
Bse3DI GCAATG 1 cut(s) 254
BseLI CCNNNNNNNGG 1 cut(s) 75
BseMI GCAATG 1 cut(s) 254
BshFI GGCC 1 cut(s) 79
BslI CCNNNNNNNGG 1 cut(s) 75
BsnI GGCC 1 cut(s) 79
Bsp143I GATC 1 cut(s) 21
BspANI GGCC 1 cut(s) 79
BsrDI GCAATG 1 cut(s) 254
BssMI GATC 1 cut(s) 21
Bst4CI ACNGT 3 cut(s) 121, 224, 354
BstC8I GCNNGC 1 cut(s) 208
BstDEI CTNAG 1 cut(s) 237
BstKTI GATC 1 cut(s) 24
BstMBI GATC 1 cut(s) 21
BstV2I GAAGAC 1 cut(s) 88
BsuRI GGCC 1 cut(s) 79
Cac8I GCNNGC 1 cut(s) 208
Cfr13I GGNCC 1 cut(s) 77
Csp6I GTAC 2 cut(s) 350, 355
CspCI CAANNNNNGTGG 2 cut(s) 274, 309
CviJI RGCY 3 cut(s) 40, 79, 206
CviKI_1 RGCY 3 cut(s) 40, 79, 206
CviQI GTAC 2 cut(s) 350, 355
DdeI CTNAG 1 cut(s) 237
DpnI GATC 1 cut(s) 23
DpnII GATC 1 cut(s) 21
EcoO109I RGGNCCY 1 cut(s) 77
EcoRI GAATTC 1 cut(s) 153
FaiI YATR 9 cut(s) 89, 104, 132, 167, 169, 244, 302, 360, 362
FauNDI CATATG 1 cut(s) 360
FblI GTMKAC 1 cut(s) 226
FspBI CTAG 1 cut(s) 41
HaeIII GGCC 1 cut(s) 79
HincII GTYRAC 1 cut(s) 173
HindII GTYRAC 1 cut(s) 173
HinfI GANTC 2 cut(s) 10, 34
Hpy166II GTNNAC 2 cut(s) 173, 227
Hpy188I TCNGA 1 cut(s) 26
Hpy188III TCNNGA 1 cut(s) 158
Hpy8I GTNNAC 2 cut(s) 173, 227
HpyCH4III ACNGT 3 cut(s) 121, 224, 354
HpyCH4V TGCA 2 cut(s) 58, 252
HpyF3I CTNAG 1 cut(s) 237
Kzo9I GATC 1 cut(s) 21
LmnI GCTCC 1 cut(s) 26
LpnPI CCDG 2 cut(s) 171, 192
MaeI CTAG 1 cut(s) 41
MaeIII GTNAC 1 cut(s) 121
MalI GATC 1 cut(s) 23
MboI GATC 1 cut(s) 21
MboII GAAGA 3 cut(s) 88, 170, 367
MluCI AATT 2 cut(s) 153, 381
MnlI CCTC 1 cut(s) 330
MseI TTAA 3 cut(s) 71, 323, 342
NdeI CATATG 1 cut(s) 360
NdeII GATC 1 cut(s) 21
PfeI GAWTC 2 cut(s) 10, 34
PspPI GGNCC 1 cut(s) 77
RsaI GTAC 2 cut(s) 351, 356
RsaNI GTAC 2 cut(s) 350, 355
SaqAI TTAA 3 cut(s) 71, 323, 342
Sau3AI GATC 1 cut(s) 21
Sau96I GGNCC 1 cut(s) 77
SetI ASST 3 cut(s) 42, 313, 348
SgeI CNNG 9 cut(s) 53, 71, 154, 170, 203, 214, 219, 298, 359
Sse9I AATT 2 cut(s) 153, 381
SspI AATATT 1 cut(s) 187
SspMI CTAG 1 cut(s) 41
TaaI ACNGT 3 cut(s) 121, 224, 354
TasI AATT 2 cut(s) 153, 381
TatI WGTACW 1 cut(s) 349
TfiI GAWTC 2 cut(s) 10, 34
Tru1I TTAA 3 cut(s) 71, 323, 342
Tru9I TTAA 3 cut(s) 71, 323, 342
TspGWI ACGGA 1 cut(s) 222
XapI RAATTY 2 cut(s) 153, 381
XmiI GTMKAC 1 cut(s) 226
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.