Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000229

Physical Location & Seq

Genomic Coordinates Reverse (-)

25748576 .. 25749136

Gene Structure 561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48696

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGAGAGAGTTACTTGGTTCTTCCTGGCATACTTAGTACGACAGCTAGCTGCTTTAACTATGGCAGCACAAACCAACCTTAACATTACCACAGACCGGTCTGCTCTTCTTGCTCTCAAATCTCATATCACCAATGACCCTCAAAACATGATCTTCACCAACTGGTCAACCACCACCCCTGTTTGCAACTGGGTTGGAGTCACTTGTGGTGCACGCCATCGTCGAGTAGCAGAGTTGAACCTCTCTTACTTTGGTCTCACAGGCACCATTCCTCCGGAGCTAGGTAACTTATCATTTCTGGTTGATCTGCGCTTCAGAAATAACAGTTTTCGTGGTACCTTGCCTCAAGAGTTGGCTCGCTTGCGCCGTTTGAAGTTTATTAACTTGGCATATAACAAGTTTACAGGAGTCATTCCGTCATGGTTTGGGTCGTTGTCCAAACTTCAAATATTCAGTTTTTATGGTAATCAATTTTCCGGTTCCATCCCAACTACAATATTCAACTTATCTGCTCTGCAAATAATTGATCTGGGTTATAACCAACTCTCAGGTACGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04016 ko04064 ko04620 ko04621 ko04624 ko04626 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04016 map04064 map04620 map04621 map04624 map04626 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

186

Amino Acids

20.96

Weight (kDa)

10.1

Isoelectric Point (pI)

27.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	31 - 69	4.7e-12	Leucine rich repeat N-terminal domain
LRR_14	PF23598	80 - 176	1.5e-07	Leucine-rich repeat region
LRR_8	PF13855	127 - 182	3.4e-08	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000229)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica	MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica	Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis	pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis	RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata	RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora	Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii	Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa	Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha	Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana	Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	537
Acc65I	GGTACC	1 cut(s)	335
AccB1I	GGYRCC	2 cut(s)	263, 335
AccIII	TCCGGA	1 cut(s)	274
AcuI	CTGAAG	1 cut(s)	298
AfaI	GTAC	3 cut(s)	39, 337, 553
AfiI	CCNNNNNNNGG	2 cut(s)	96, 281
AgeI	ACCGGT	1 cut(s)	96
AgsI	TTSAA	4 cut(s)	238, 373, 446, 502
AjnI	CCWGG	1 cut(s)	24
AluBI	AGCT	3 cut(s)	46, 50, 280
AluI	AGCT	3 cut(s)	46, 50, 280
Alw21I	GWGCWC	1 cut(s)	214
Alw26I	GTCTC	1 cut(s)	260
Alw44I	GTGCAC	1 cut(s)	210
Aor13HI	TCCGGA	1 cut(s)	274
ApaLI	GTGCAC	1 cut(s)	210
ApeKI	GCWGC	2 cut(s)	50, 65
AsiGI	ACCGGT	1 cut(s)	96
Asp718I	GGTACC	1 cut(s)	335
AspLEI	GCGC	2 cut(s)	312, 366
AsuHPI	GGTGA	2 cut(s)	121, 148
AsuNHI	GCTAGC	1 cut(s)	46
BaeGI	GKGCMC	1 cut(s)	214
BanI	GGYRCC	2 cut(s)	263, 335
Bbv12I	GWGCWC	1 cut(s)	214
BbvI	GCAGC	2 cut(s)	37, 77
BccI	CCATC	2 cut(s)	225, 491
BceAI	ACGGC	1 cut(s)	351
BciT130I	CCWGG	1 cut(s)	26
BcoDI	GTCTC	1 cut(s)	260
BfaI	CTAG	2 cut(s)	47, 281
BisI	GCNGC	2 cut(s)	51, 66
BlsI	GCNGC	2 cut(s)	52, 67
Bme1390I	CCNGG	1 cut(s)	26
BmiI	GGNNCC	3 cut(s)	265, 337, 481
BmrFI	CCNGG	1 cut(s)	26
BmrI	ACTGGG	1 cut(s)	199
BmtI	GCTAGC	1 cut(s)	50
BmuI	ACTGGG	1 cut(s)	199
BpuEI	CTTGAG	1 cut(s)	330
BsaI	GGTCTC	1 cut(s)	260
BsaWI	WCCGGW	3 cut(s)	96, 274, 476
BsaXI	ACNNNNNCTCC	2 cut(s)	256, 286
Bsc4I	CCNNNNNNNGG	2 cut(s)	96, 281
Bse118I	RCCGGY	1 cut(s)	96
Bse1I	ACTGG	2 cut(s)	167, 194
BseAI	TCCGGA	1 cut(s)	274
BseBI	CCWGG	1 cut(s)	26
BseGI	GGATG	1 cut(s)	483
BseLI	CCNNNNNNNGG	2 cut(s)	96, 281
BseMII	CTCAG	1 cut(s)	561
BseNI	ACTGG	2 cut(s)	167, 194
BseSI	GKGCMC	1 cut(s)	214
BseXI	GCAGC	2 cut(s)	37, 77
BshNI	GGYRCC	2 cut(s)	263, 335
BshTI	ACCGGT	1 cut(s)	96
BsiHKAI	GWGCWC	1 cut(s)	214
BsiSI	CCGG	3 cut(s)	97, 275, 477
BslI	CCNNNNNNNGG	2 cut(s)	96, 281
BsmAI	GTCTC	1 cut(s)	260
Bso31I	GGTCTC	1 cut(s)	260
Bsp1286I	GDGCHC	1 cut(s)	214
Bsp13I	TCCGGA	1 cut(s)	274
Bsp143I	GATC	3 cut(s)	150, 304, 526
BspCNI	CTCAG	1 cut(s)	560
BspEI	TCCGGA	1 cut(s)	274
BspLI	GGNNCC	3 cut(s)	265, 337, 481
BspOI	GCTAGC	1 cut(s)	50
BspQI	GCTCTTC	1 cut(s)	111
BspT107I	GGYRCC	2 cut(s)	263, 335
BspTNI	GGTCTC	1 cut(s)	260
BsrFI	RCCGGY	1 cut(s)	96
BsrI	ACTGG	2 cut(s)	167, 194
BssAI	RCCGGY	1 cut(s)	96
BssMI	GATC	3 cut(s)	150, 304, 526
Bst2UI	CCWGG	1 cut(s)	26
Bst4CI	ACNGT	1 cut(s)	326
Bst6I	CTCTTC	1 cut(s)	111
BstC8I	GCNNGC	4 cut(s)	48, 214, 358, 362
BstDEI	CTNAG	2 cut(s)	34, 547
BstF5I	GGATG	1 cut(s)	483
BstHHI	GCGC	2 cut(s)	312, 366
BstKTI	GATC	3 cut(s)	153, 307, 529
BstMAI	GTCTC	1 cut(s)	260
BstMBI	GATC	3 cut(s)	150, 304, 526
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstNI	CCWGG	1 cut(s)	26
BstSCI	CCNGG	1 cut(s)	24
BstSLI	GKGCMC	1 cut(s)	214
BstV1I	GCAGC	2 cut(s)	37, 77
BtsCI	GGATG	1 cut(s)	483
Cac8I	GCNNGC	4 cut(s)	48, 214, 358, 362
CfoI	GCGC	2 cut(s)	312, 366
Cfr10I	RCCGGY	1 cut(s)	96
Csp6I	GTAC	3 cut(s)	38, 336, 552
CspAI	ACCGGT	1 cut(s)	96
CviAII	CATG	2 cut(s)	148, 420
CviJI	RGCY	4 cut(s)	46, 50, 280, 356
CviKI_1	RGCY	4 cut(s)	46, 50, 280, 356
CviQI	GTAC	3 cut(s)	38, 336, 552
DdeI	CTNAG	2 cut(s)	34, 547
DpnI	GATC	3 cut(s)	152, 306, 528
DpnII	GATC	3 cut(s)	150, 304, 526
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
Eco31I	GGTCTC	1 cut(s)	260
Eco57I	CTGAAG	1 cut(s)	298
EcoRII	CCWGG	1 cut(s)	24
FaeI	CATG	2 cut(s)	151, 423
FaiI	YATR	9 cut(s)	31, 62, 126, 149, 391, 393, 421, 462, 537
FatI	CATG	2 cut(s)	147, 419
Fnu4HI	GCNGC	2 cut(s)	51, 66
FokI	GGATG	1 cut(s)	470
Fsp4HI	GCNGC	2 cut(s)	51, 66
FspBI	CTAG	2 cut(s)	47, 281
GlaI	GCGC	2 cut(s)	311, 365
GluI	GCNGC	2 cut(s)	51, 66
HapII	CCGG	3 cut(s)	97, 275, 477
HhaI	GCGC	2 cut(s)	312, 366
Hin1II	CATG	2 cut(s)	151, 423
Hin6I	GCGC	2 cut(s)	310, 364
HinP1I	GCGC	2 cut(s)	310, 364
HincII	GTYRAC	1 cut(s)	168
HindII	GTYRAC	1 cut(s)	168
HinfI	GANTC	2 cut(s)	198, 408
HpaII	CCGG	3 cut(s)	97, 275, 477
HphI	GGTGA	2 cut(s)	121, 148
Hpy166II	GTNNAC	3 cut(s)	168, 212, 402
Hpy188I	TCNGA	1 cut(s)	317
Hpy188III	TCNNGA	2 cut(s)	275, 347
Hpy8I	GTNNAC	3 cut(s)	168, 212, 402
Hpy99I	CGWCG	1 cut(s)	225
HpyCH4III	ACNGT	1 cut(s)	326
HpyCH4V	TGCA	3 cut(s)	186, 212, 517
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
HpyF3I	CTNAG	2 cut(s)	34, 547
Hsp92II	CATG	2 cut(s)	151, 423
HspAI	GCGC	2 cut(s)	310, 364
Kpn2I	TCCGGA	1 cut(s)	274
KpnI	GGTACC	1 cut(s)	339
Kzo9I	GATC	3 cut(s)	150, 304, 526
LguI	GCTCTTC	1 cut(s)	111
LmnI	GCTCC	1 cut(s)	277
Lsp1109I	GCAGC	2 cut(s)	37, 77
MaeI	CTAG	2 cut(s)	47, 281
MaeIII	GTNAC	3 cut(s)	10, 199, 284
MalI	GATC	3 cut(s)	152, 306, 528
MboI	GATC	3 cut(s)	150, 304, 526
MboII	GAAGA	3 cut(s)	13, 98, 145
MhlI	GDGCHC	1 cut(s)	214
MluCI	AATT	2 cut(s)	470, 522
MlyI	GAGTC	2 cut(s)	207, 417
MmeI	TCCRAC	1 cut(s)	175
MnlI	CCTC	4 cut(s)	150, 251, 282, 354
MroI	TCCGGA	1 cut(s)	274
MseI	TTAA	3 cut(s)	56, 81, 381
MspI	CCGG	3 cut(s)	97, 275, 477
MspR9I	CCNGG	1 cut(s)	26
MvaI	CCWGG	1 cut(s)	26
MwoI	GCNNNNNNNGC	1 cut(s)	110
NdeII	GATC	3 cut(s)	150, 304, 526
NheI	GCTAGC	1 cut(s)	46
NlaIII	CATG	2 cut(s)	151, 423
NlaIV	GGNNCC	3 cut(s)	265, 337, 481
NmuCI	GTSAC	1 cut(s)	199
PciSI	GCTCTTC	1 cut(s)	111
PcsI	WCGNNNNNNNCGW	2 cut(s)	220, 364
PinAI	ACCGGT	1 cut(s)	96
PkrI	GCNGC	2 cut(s)	52, 67
PleI	GAGTC	2 cut(s)	206, 416
PpsI	GAGTC	2 cut(s)	206, 416
PsiI	TTATAA	1 cut(s)	537
Psp6I	CCWGG	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	24
PspN4I	GGNNCC	3 cut(s)	265, 337, 481
PsrI	GAACNNNNNNTAC	2 cut(s)	230, 262
RsaI	GTAC	3 cut(s)	39, 337, 553
RsaNI	GTAC	3 cut(s)	38, 336, 552
SapI	GCTCTTC	1 cut(s)	111
SaqAI	TTAA	3 cut(s)	56, 81, 381
SatI	GCNGC	2 cut(s)	51, 66
Sau3AI	GATC	3 cut(s)	150, 304, 526
SchI	GAGTC	2 cut(s)	207, 417
ScrFI	CCNGG	1 cut(s)	26
SduI	GDGCHC	1 cut(s)	214
SetI	ASST	8 cut(s)	48, 52, 81, 243, 282, 286, 341, 553
SmlI	CTYRAG	1 cut(s)	345
SmoI	CTYRAG	1 cut(s)	345
Sse9I	AATT	2 cut(s)	470, 522
SspI	AATATT	2 cut(s)	450, 498
SspMI	CTAG	2 cut(s)	47, 281
StyD4I	CCNGG	1 cut(s)	24
TaaI	ACNGT	1 cut(s)	326
TaqI	TCGA	1 cut(s)	223
TasI	AATT	2 cut(s)	470, 522
Tru1I	TTAA	3 cut(s)	56, 81, 381
Tru9I	TTAA	3 cut(s)	56, 81, 381
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	2 cut(s)	50, 65
Tsp45I	GTSAC	1 cut(s)	199
TspGWI	ACGGA	1 cut(s)	405
VneI	GTGCAC	1 cut(s)	210
XspI	CTAG	2 cut(s)	47, 281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.