Rmu_sc0009639.1_g000020

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009639.1
OG0000229
Physical Location & Seq
Forward (+)
74772 .. 75179
408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009639.1_g000020.1.cds

Sequence Viewer

Length: 408 bp
atggcagcacaaaccaagcttaacatcaccacagaccagtctgctcttcttgctctcaaagcccgtatcagcagtgaccctcaaaacatgatcttcaccaactggtcaaccactactcctatttgcaactgggttggggtcacttgtggtgcacgccatcatcgagtcgcagacttgaacctctcttactttggtctcacaggcaccattcctccggagttaggaaacttatcatttcttgttaatatggacttcagcaataacagtttccatggtatattgcctcaggaattggctcgcttgcgtcggttgaagtttatcatcttgggaaacaacaagttcatgggagtcgttccgtcatggtttgggtccttattcaaacttcaagtattcagtttcttttggtaa

Protein Analysis

135

Amino Acids

15.18

Weight (kDa)

9.78

Isoelectric Point (pI)

29.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 203
AccIII TCCGGA 1 cut(s) 214
AcuI CTGAAG 1 cut(s) 238
AfiI CCNNNNNNNGG 1 cut(s) 221
AgsI TTSAA 4 cut(s) 178, 313, 379, 386
AluBI AGCT 1 cut(s) 19
AluI AGCT 1 cut(s) 19
Alw21I GWGCWC 1 cut(s) 154
Alw26I GTCTC 1 cut(s) 200
Alw44I GTGCAC 1 cut(s) 150
Aor13HI TCCGGA 1 cut(s) 214
ApaLI GTGCAC 1 cut(s) 150
ApeKI GCWGC 1 cut(s) 5
AspS9I GGNCC 1 cut(s) 369
AsuHPI GGTGA 2 cut(s) 19, 88
AvaII GGWCC 1 cut(s) 369
AxyI CCTNAGG 1 cut(s) 285
BaeGI GKGCMC 1 cut(s) 154
BanI GGYRCC 1 cut(s) 203
Bbv12I GWGCWC 1 cut(s) 154
BbvI GCAGC 1 cut(s) 17
BccI CCATC 1 cut(s) 165
BcoDI GTCTC 1 cut(s) 200
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme18I GGWCC 1 cut(s) 369
BmgT120I GGNCC 1 cut(s) 369
BmiI GGNNCC 2 cut(s) 205, 370
BmrI ACTGGG 1 cut(s) 139
BmuI ACTGGG 1 cut(s) 139
BsaI GGTCTC 1 cut(s) 200
BsaJI CCNNGG 1 cut(s) 271
BsaWI WCCGGW 1 cut(s) 214
BsaXI ACNNNNNCTCC 4 cut(s) 100, 130, 196, 226
Bsc4I CCNNNNNNNGG 1 cut(s) 221
Bse1I ACTGG 3 cut(s) 37, 107, 134
Bse21I CCTNAGG 1 cut(s) 285
BseAI TCCGGA 1 cut(s) 214
BseDI CCNNGG 1 cut(s) 271
BseLI CCNNNNNNNGG 1 cut(s) 221
BseMII CTCAG 1 cut(s) 299
BseNI ACTGG 3 cut(s) 37, 107, 134
BseSI GKGCMC 1 cut(s) 154
BseXI GCAGC 1 cut(s) 17
BshNI GGYRCC 1 cut(s) 203
BsiHKAI GWGCWC 1 cut(s) 154
BsiSI CCGG 1 cut(s) 215
BslI CCNNNNNNNGG 1 cut(s) 221
BsmAI GTCTC 1 cut(s) 200
Bso31I GGTCTC 1 cut(s) 200
Bsp1286I GDGCHC 1 cut(s) 154
Bsp13I TCCGGA 1 cut(s) 214
Bsp143I GATC 1 cut(s) 90
Bsp19I CCATGG 1 cut(s) 271
BspCNI CTCAG 1 cut(s) 298
BspEI TCCGGA 1 cut(s) 214
BspLI GGNNCC 2 cut(s) 205, 370
BspQI GCTCTTC 1 cut(s) 51
BspT107I GGYRCC 1 cut(s) 203
BspTNI GGTCTC 1 cut(s) 200
BsrI ACTGG 3 cut(s) 37, 107, 134
BssECI CCNNGG 1 cut(s) 271
BssMI GATC 1 cut(s) 90
BssT1I CCWWGG 1 cut(s) 271
Bst4CI ACNGT 1 cut(s) 266
Bst6I CTCTTC 1 cut(s) 51
BstC8I GCNNGC 3 cut(s) 154, 298, 302
BstDEI CTNAG 1 cut(s) 285
BstDSI CCRYGG 1 cut(s) 271
BstKTI GATC 1 cut(s) 93
BstMAI GTCTC 1 cut(s) 200
BstMBI GATC 1 cut(s) 90
BstMWI GCNNNNNNNGC 2 cut(s) 50, 59
BstSLI GKGCMC 1 cut(s) 154
BstV1I GCAGC 1 cut(s) 17
Bsu36I CCTNAGG 1 cut(s) 285
BtgI CCRYGG 1 cut(s) 271
BtsI GCAGTG 1 cut(s) 79
BtsIMutI CAGTG 1 cut(s) 79
Cac8I GCNNGC 3 cut(s) 154, 298, 302
Cfr13I GGNCC 1 cut(s) 369
CseI GACGC 1 cut(s) 293
CviAII CATG 4 cut(s) 88, 272, 343, 360
CviJI RGCY 3 cut(s) 19, 62, 296
CviKI_1 RGCY 3 cut(s) 19, 62, 296
DdeI CTNAG 1 cut(s) 285
DpnI GATC 1 cut(s) 92
DpnII GATC 1 cut(s) 90
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco130I CCWWGG 1 cut(s) 271
Eco31I GGTCTC 1 cut(s) 200
Eco47I GGWCC 1 cut(s) 369
Eco57I CTGAAG 1 cut(s) 238
Eco81I CCTNAGG 1 cut(s) 285
EcoO109I RGGNCCY 1 cut(s) 369
EcoT14I CCWWGG 1 cut(s) 271
ErhI CCWWGG 1 cut(s) 271
FaeI CATG 4 cut(s) 91, 275, 346, 363
FaiI YATR 6 cut(s) 89, 248, 273, 278, 344, 361
FatI CATG 4 cut(s) 87, 271, 342, 359
Fnu4HI GCNGC 1 cut(s) 6
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
HapII CCGG 1 cut(s) 215
HgaI GACGC 1 cut(s) 293
Hin1II CATG 4 cut(s) 91, 275, 346, 363
HincII GTYRAC 1 cut(s) 108
HindII GTYRAC 1 cut(s) 108
HindIII AAGCTT 1 cut(s) 17
HinfI GANTC 2 cut(s) 165, 348
HpaII CCGG 1 cut(s) 215
HphI GGTGA 2 cut(s) 19, 88
Hpy166II GTNNAC 2 cut(s) 108, 152
Hpy188III TCNNGA 2 cut(s) 215, 287
Hpy8I GTNNAC 2 cut(s) 108, 152
Hpy99I CGWCG 1 cut(s) 309
HpyCH4III ACNGT 1 cut(s) 266
HpyCH4V TGCA 2 cut(s) 126, 152
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 59
HpyF3I CTNAG 1 cut(s) 285
Hsp92II CATG 4 cut(s) 91, 275, 346, 363
Kpn2I TCCGGA 1 cut(s) 214
Kzo9I GATC 1 cut(s) 90
LguI GCTCTTC 1 cut(s) 51
LpnPI CCDG 6 cut(s) 50, 88, 115, 186, 228, 272
Lsp1109I GCAGC 1 cut(s) 17
MaeIII GTNAC 2 cut(s) 74, 139
MalI GATC 1 cut(s) 92
MboI GATC 1 cut(s) 90
MboII GAAGA 2 cut(s) 38, 85
MhlI GDGCHC 1 cut(s) 154
MluCI AATT 1 cut(s) 290
MlyI GAGTC 2 cut(s) 174, 357
MnlI CCTC 4 cut(s) 90, 191, 222, 294
MroI TCCGGA 1 cut(s) 214
MseI TTAA 2 cut(s) 21, 243
MspI CCGG 1 cut(s) 215
MwoI GCNNNNNNNGC 2 cut(s) 50, 59
NcoI CCATGG 1 cut(s) 271
NdeII GATC 1 cut(s) 90
NlaIII CATG 4 cut(s) 91, 275, 346, 363
NlaIV GGNNCC 2 cut(s) 205, 370
NmuCI GTSAC 2 cut(s) 74, 139
PciSI GCTCTTC 1 cut(s) 51
PcsI WCGNNNNNNNCGW 1 cut(s) 160
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 2 cut(s) 173, 356
PpsI GAGTC 2 cut(s) 173, 356
PpuMI RGGWCCY 1 cut(s) 369
Psp5II RGGWCCY 1 cut(s) 369
PspN4I GGNNCC 2 cut(s) 205, 370
PspPI GGNCC 1 cut(s) 369
PspPPI RGGWCCY 1 cut(s) 369
PsrI GAACNNNNNNTAC 2 cut(s) 170, 202
SapI GCTCTTC 1 cut(s) 51
SaqAI TTAA 2 cut(s) 21, 243
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 1 cut(s) 90
Sau96I GGNCC 1 cut(s) 369
SchI GAGTC 2 cut(s) 174, 357
SduI GDGCHC 1 cut(s) 154
SetI ASST 2 cut(s) 21, 183
SinI GGWCC 1 cut(s) 369
Sse9I AATT 1 cut(s) 290
StyI CCWWGG 1 cut(s) 271
TaaI ACNGT 1 cut(s) 266
TaqI TCGA 1 cut(s) 163
TasI AATT 1 cut(s) 290
Tru1I TTAA 2 cut(s) 21, 243
Tru9I TTAA 2 cut(s) 21, 243
TscAI CASTG 1 cut(s) 79
TseFI GTSAC 2 cut(s) 74, 139
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 2 cut(s) 74, 139
TspDTI ATGAA 1 cut(s) 331
TspGWI ACGGA 1 cut(s) 345
TspRI CASTG 1 cut(s) 79
VneI GTGCAC 1 cut(s) 150
VpaK11BI GGWCC 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.