Prupe.4G063500_v2.0.a1

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000229
Physical Location & Seq
Forward (+)
3049120 .. 3051191
2072 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G063500.1

Sequence Viewer

Length: 1038 bp
ATGAAAAACACTTCGTGGTTGGAAGGAACTTGTCTGTTTTCTGTGCTCATGGAGAGAAGTCGTTTCCTCTTGTCAATAACGTTGTTGCTGGTACACCACAGTTCTATATGTACAGTAGGTGCAACACAAACCAACATCACCACAGACCAGTCTGCTCTTCTTGCTCTGAAATCTCATATCACTAGTGATCCTCACAACATCTTGGTCAACTGGTCAACCACCACCTCCGTCTGCAACTGGGTTGGCATTACTTGTGGTGCTCGCCACCTCAGAGTAGCATCATTGAATCTCTCGTATATGAGTTTCACAGGCACCATTCCACCACACTTAGGCAACCTCTCATTCCTTGTTGCACTAAGCTTCAAAAATAACAGCTTCCATGGTAGTTTGCCCCATGAATTGTCTTATTTGCGTCGCCTGAAGTTGATTAGCTTCAGATTCAACAATTTTATGGGATCCATTCCATCGTGGTTTGGGTCCTTCCCCAAACTTCAAAGCTTCGATTTGTATGGCAATCAGTTTTCAGGTACCATACCTTCGACTATCTTCAACTTGTCTACATTGCAAGACATAAATCTAAGCGCTAACAAACTATCAGGTGTGATACCCAGAGAAATAGGGAACTTAACAATGTTGAAGGAGATATACCTTGACTCCAACAATTTCAATGAAATTCCAAAAGAGATCGGCTTTTTACATCAGCTGGAAAAGTTGTATGTGCAGCTTAATGCCCTAAAAGGCCCTGTTCCTGTGGTTGTTGTCAACATGTCTTCTTTGACTGAGTTGACTCTATATGACAACAGCTTGAGTGGTGGTCTTCCAGATAATATATGCCAACATCTTCCTAGTCTTCAAATCTTGAATTTGGGTCGCAACCAGTTTGATGGTCTACTTCCATCCAAATTATGCCATTGCAGAGAGCTTCTTTTCCTTAATTTGGAGGAAAACAATTTCAGTGGAAGCATACCAAAAAATATTGGGAACTTAACAATGATGAAGCTTTTATCCCTTGGCTACAATACTTTGACGGGTAATTGA

Protein Analysis

346

Amino Acids

38.31

Weight (kDa)

8.45

Isoelectric Point (pI)

38.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 527
AccB1I GGYRCC 2 cut(s) 311, 527
AccI GTMKAC 2 cut(s) 557, 889
AclI AACGTT 1 cut(s) 80
AclWI GGATC 3 cut(s) 182, 450, 463
AcsI RAATTY 2 cut(s) 672, 862
AcuI CTGAAG 2 cut(s) 418, 440
AdeI CACNNNGTG 1 cut(s) 15
AfaI GTAC 3 cut(s) 93, 112, 529
AfeI AGCGCT 1 cut(s) 583
AfiI CCNNNNNNNGG 2 cut(s) 329, 937
AflIII ACRYGT 1 cut(s) 765
AgsI TTSAA 9 cut(s) 286, 364, 442, 494, 550, 637, 667, 854, 862
AhlI ACTAGT 1 cut(s) 182
AluBI AGCT 9 cut(s) 360, 375, 432, 498, 703, 724, 804, 922, 1000
AluI AGCT 9 cut(s) 360, 375, 432, 498, 703, 724, 804, 922, 1000
Alw21I GWGCWC 2 cut(s) 48, 262
AlwI GGATC 3 cut(s) 182, 450, 463
Aor51HI AGCGCT 1 cut(s) 583
AoxI GGCC 1 cut(s) 739
ApeKI GCWGC 1 cut(s) 721
ApoI RAATTY 2 cut(s) 672, 862
Asp718I GGTACC 1 cut(s) 527
AspLEI GCGC 1 cut(s) 584
AspS9I GGNCC 2 cut(s) 477, 740
AsuHPI GGTGA 1 cut(s) 130
AvaII GGWCC 1 cut(s) 477
BamHI GGATCC 1 cut(s) 455
BanI GGYRCC 2 cut(s) 311, 527
BarI GAAGNNNNNNTAC 4 cut(s) 520, 552, 629, 661
BbsI GAAGAC 3 cut(s) 762, 809, 842
Bbv12I GWGCWC 2 cut(s) 48, 262
BbvI GCAGC 1 cut(s) 733
BccI CCATC 3 cut(s) 472, 878, 904
BcuI ACTAGT 1 cut(s) 182
BfaI CTAG 2 cut(s) 183, 846
BfoI RGCGCY 1 cut(s) 585
BisI GCNGC 1 cut(s) 722
BlsI GCNGC 1 cut(s) 723
Bme18I GGWCC 1 cut(s) 477
BmgT120I GGNCC 2 cut(s) 477, 740
BmiI GGNNCC 4 cut(s) 313, 457, 478, 529
BmrI ACTGGG 1 cut(s) 247
BmsI GCATC 1 cut(s) 287
BmuI ACTGGG 1 cut(s) 247
BpiI GAAGAC 3 cut(s) 762, 809, 842
BpuEI CTTGAG 1 cut(s) 826
BsaJI CCNNGG 2 cut(s) 379, 1009
BsaXI ACNNNNNCTCC 2 cut(s) 638, 668
Bsc4I CCNNNNNNNGG 2 cut(s) 329, 937
Bse1I ACTGG 4 cut(s) 148, 215, 242, 877
Bse3DI GCAATG 2 cut(s) 560, 910
BseDI CCNNGG 2 cut(s) 379, 1009
BseGI GGATG 1 cut(s) 896
BseLI CCNNNNNNNGG 2 cut(s) 329, 937
BseMI GCAATG 2 cut(s) 560, 910
BseMII CTCAG 2 cut(s) 283, 771
BseNI ACTGG 4 cut(s) 148, 215, 242, 877
BseXI GCAGC 1 cut(s) 733
BsgI GTGCAG 1 cut(s) 740
BshFI GGCC 1 cut(s) 741
BshNI GGYRCC 2 cut(s) 311, 527
BsiHKAI GWGCWC 2 cut(s) 48, 262
BslI CCNNNNNNNGG 2 cut(s) 329, 937
BsnI GGCC 1 cut(s) 741
Bsp1286I GDGCHC 2 cut(s) 48, 262
Bsp1407I TGTACA 1 cut(s) 110
Bsp143I GATC 3 cut(s) 187, 455, 684
Bsp19I CCATGG 1 cut(s) 379
BspANI GGCC 1 cut(s) 741
BspCNI CTCAG 2 cut(s) 282, 772
BspLI GGNNCC 4 cut(s) 313, 457, 478, 529
BspPI GGATC 3 cut(s) 182, 450, 463
BspQI GCTCTTC 1 cut(s) 162
BspT107I GGYRCC 2 cut(s) 311, 527
BsrDI GCAATG 2 cut(s) 560, 910
BsrGI TGTACA 1 cut(s) 110
BsrI ACTGG 4 cut(s) 148, 215, 242, 877
BssECI CCNNGG 2 cut(s) 379, 1009
BssMI GATC 3 cut(s) 187, 455, 684
BssT1I CCWWGG 2 cut(s) 379, 1009
Bst4CI ACNGT 2 cut(s) 101, 115
Bst6I CTCTTC 1 cut(s) 162
BstAUI TGTACA 1 cut(s) 110
BstC8I GCNNGC 1 cut(s) 262
BstDEI CTNAG 5 cut(s) 269, 328, 356, 578, 780
BstDSI CCRYGG 1 cut(s) 379
BstF5I GGATG 1 cut(s) 896
BstH2I RGCGCY 1 cut(s) 585
BstHHI GCGC 1 cut(s) 584
BstKTI GATC 3 cut(s) 190, 458, 687
BstMBI GATC 3 cut(s) 187, 455, 684
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstNSI RCATGY 1 cut(s) 769
BstV1I GCAGC 1 cut(s) 733
BstV2I GAAGAC 3 cut(s) 762, 809, 842
BstX2I RGATCY 1 cut(s) 455
BstXI CCANNNNNNTGG 1 cut(s) 884
BstYI RGATCY 1 cut(s) 455
BsuRI GGCC 1 cut(s) 741
BtgI CCRYGG 1 cut(s) 379
BtsCI GGATG 1 cut(s) 896
BtsIMutI CAGTG 1 cut(s) 961
Cac8I GCNNGC 1 cut(s) 262
CfoI GCGC 1 cut(s) 584
Cfr13I GGNCC 2 cut(s) 477, 740
CseI GACGC 1 cut(s) 401
Csp6I GTAC 3 cut(s) 92, 111, 528
CspCI CAANNNNNGTGG 2 cut(s) 937, 972
CviAII CATG 4 cut(s) 49, 380, 395, 766
CviQI GTAC 3 cut(s) 92, 111, 528
DdeI CTNAG 5 cut(s) 269, 328, 356, 578, 780
DpnI GATC 3 cut(s) 189, 457, 686
DpnII GATC 3 cut(s) 187, 455, 684
DraIII CACNNNGTG 1 cut(s) 15
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
Eco130I CCWWGG 2 cut(s) 379, 1009
Eco47I GGWCC 1 cut(s) 477
Eco47III AGCGCT 1 cut(s) 583
Eco57I CTGAAG 2 cut(s) 418, 440
EcoO109I RGGNCCY 2 cut(s) 477, 740
EcoT14I CCWWGG 2 cut(s) 379, 1009
ErhI CCWWGG 2 cut(s) 379, 1009
FaeI CATG 4 cut(s) 52, 383, 398, 769
FatI CATG 4 cut(s) 48, 379, 394, 765
FblI GTMKAC 2 cut(s) 557, 889
Fnu4HI GCNGC 1 cut(s) 722
FokI GGATG 1 cut(s) 883
Fsp4HI GCNGC 1 cut(s) 722
FspBI CTAG 2 cut(s) 183, 846
GlaI GCGC 1 cut(s) 583
GluI GCNGC 1 cut(s) 722
HaeII RGCGCY 1 cut(s) 585
HaeIII GGCC 1 cut(s) 741
HgaI GACGC 1 cut(s) 401
HhaI GCGC 1 cut(s) 584
Hin1II CATG 4 cut(s) 52, 383, 398, 769
Hin6I GCGC 1 cut(s) 582
HinP1I GCGC 1 cut(s) 582
HincII GTYRAC 4 cut(s) 208, 216, 763, 786
HindII GTYRAC 4 cut(s) 208, 216, 763, 786
HindIII AAGCTT 3 cut(s) 358, 496, 998
HinfI GANTC 4 cut(s) 286, 438, 653, 787
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 7 cut(s) 94, 208, 216, 558, 763, 786, 890
Hpy188I TCNGA 3 cut(s) 168, 272, 437
Hpy188III TCNNGA 2 cut(s) 821, 859
Hpy8I GTNNAC 7 cut(s) 94, 208, 216, 558, 763, 786, 890
Hpy99I CGWCG 1 cut(s) 417
HpyAV CCTTC 4 cut(s) 17, 490, 546, 631
HpyCH4III ACNGT 2 cut(s) 101, 115
HpyCH4IV ACGT 1 cut(s) 80
HpyCH4V TGCA 6 cut(s) 122, 234, 353, 565, 721, 915
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpyF3I CTNAG 5 cut(s) 269, 328, 356, 578, 780
HpySE526I ACGT 1 cut(s) 80
Hsp92II CATG 4 cut(s) 52, 383, 398, 769
HspAI GCGC 1 cut(s) 582
KpnI GGTACC 1 cut(s) 531
Kzo9I GATC 3 cut(s) 187, 455, 684
LguI GCTCTTC 1 cut(s) 162
Lsp1109I GCAGC 1 cut(s) 733
LweI GCATC 1 cut(s) 287
MaeI CTAG 2 cut(s) 183, 846
MaeII ACGT 1 cut(s) 80
MalI GATC 3 cut(s) 189, 457, 686
MboI GATC 3 cut(s) 187, 455, 684
MboII GAAGA 6 cut(s) 149, 538, 762, 809, 833, 842
MflI RGATCY 1 cut(s) 455
MhlI GDGCHC 2 cut(s) 48, 262
MluCI AATT 9 cut(s) 398, 445, 661, 672, 862, 902, 934, 949, 1033
MlyI GAGTC 2 cut(s) 647, 781
MmeI TCCRAC 1 cut(s) 681
MnlI CCTC 6 cut(s) 77, 201, 235, 278, 347, 934
MseI TTAA 4 cut(s) 626, 726, 933, 986
MspA1I CMGCKG 1 cut(s) 703
MwoI GCNNNNNNNGC 1 cut(s) 161
NcoI CCATGG 1 cut(s) 379
NdeII GATC 3 cut(s) 187, 455, 684
NlaIII CATG 4 cut(s) 52, 383, 398, 769
NlaIV GGNNCC 4 cut(s) 313, 457, 478, 529
NspI RCATGY 1 cut(s) 769
PciI ACATGT 1 cut(s) 765
PciSI GCTCTTC 1 cut(s) 162
PfeI GAWTC 2 cut(s) 286, 438
PkrI GCNGC 1 cut(s) 723
PleI GAGTC 2 cut(s) 647, 781
PpsI GAGTC 2 cut(s) 647, 781
PpuMI RGGWCCY 1 cut(s) 477
PscI ACATGT 1 cut(s) 765
Psp1406I AACGTT 1 cut(s) 80
Psp5II RGGWCCY 1 cut(s) 477
PspN4I GGNNCC 4 cut(s) 313, 457, 478, 529
PspPI GGNCC 2 cut(s) 477, 740
PspPPI RGGWCCY 1 cut(s) 477
PsuI RGATCY 1 cut(s) 455
PvuII CAGCTG 1 cut(s) 703
RsaI GTAC 3 cut(s) 93, 112, 529
RsaNI GTAC 3 cut(s) 92, 111, 528
SapI GCTCTTC 1 cut(s) 162
SaqAI TTAA 4 cut(s) 626, 726, 933, 986
SatI GCNGC 1 cut(s) 722
Sau3AI GATC 3 cut(s) 187, 455, 684
Sau96I GGNCC 2 cut(s) 477, 740
SchI GAGTC 2 cut(s) 647, 781
SduI GDGCHC 2 cut(s) 48, 262
SfaNI GCATC 1 cut(s) 287
SinI GGWCC 1 cut(s) 477
SmlI CTYRAG 1 cut(s) 805
SmoI CTYRAG 1 cut(s) 805
SpeI ACTAGT 1 cut(s) 182
Sse9I AATT 9 cut(s) 398, 445, 661, 672, 862, 902, 934, 949, 1033
SspI AATATT 1 cut(s) 976
SspMI CTAG 2 cut(s) 183, 846
StyI CCWWGG 2 cut(s) 379, 1009
TaaI ACNGT 2 cut(s) 101, 115
TaiI ACGT 1 cut(s) 83
TaqI TCGA 2 cut(s) 501, 539
TasI AATT 9 cut(s) 398, 445, 661, 672, 862, 902, 934, 949, 1033
TatI WGTACW 1 cut(s) 110
TfiI GAWTC 2 cut(s) 286, 438
Tru1I TTAA 4 cut(s) 626, 726, 933, 986
Tru9I TTAA 4 cut(s) 626, 726, 933, 986
TscAI CASTG 1 cut(s) 961
TseI GCWGC 1 cut(s) 721
TspDTI ATGAA 4 cut(s) 17, 411, 684, 1010
TspGWI ACGGA 1 cut(s) 217
TspRI CASTG 1 cut(s) 961
VpaK11BI GGWCC 1 cut(s) 477
XapI RAATTY 2 cut(s) 672, 862
XceI RCATGY 1 cut(s) 769
XmiI GTMKAC 2 cut(s) 557, 889
XspI CTAG 2 cut(s) 183, 846
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.