Rmu_sc0003242.1_g000010

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003242.1
OG0000229
Physical Location & Seq
Forward (+)
58643 .. 59155
513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003242.1_g000010.1.cds

Sequence Viewer

Length: 513 bp
atggagagcacttggttcttcgtcgtctactcttgttgtatcgccgctagctgcttaactatggcagcaccacaaaccaacatcaccacagaccaatctgctctttttgctctcaaagcccatatcaccagtgaccctcgtaacttgatctttgctaactggtcagccaccattactgtttgcaactgggttggcgttacttgtggtacacgccaccttagaggcacagccttgaacctctcctactttggtctccaaggcacaattccttcacagctaggcaacctatcgtttcttgttgatattgacttgagaaataacagttttcacagtcccttgccccaggaattgattcgtttgcggcaattgaagttcattagtttcaaattcaacaagtttatgggaatcattccgacatggtttgggtccttatccaaacttcaaaccttgtctttgtacggtaataagttttcctgcaaacccatcaacaaaatagtcaaggcaattctctag

Protein Analysis

170

Amino Acids

18.99

Weight (kDa)

9.57

Isoelectric Point (pI)

37.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 27
AciI CCGC 2 cut(s) 45, 361
AcsI RAATTY 1 cut(s) 386
AfaI GTAC 2 cut(s) 208, 458
AgsI TTSAA 5 cut(s) 235, 370, 385, 391, 443
AjnI CCWGG 1 cut(s) 342
AjuI GAANNNNNNNTTGG 2 cut(s) 249, 281
AluBI AGCT 2 cut(s) 51, 277
AluI AGCT 2 cut(s) 51, 277
Alw21I GWGCWC 1 cut(s) 11
Alw26I GTCTC 1 cut(s) 257
ApeKI GCWGC 2 cut(s) 51, 65
ApoI RAATTY 1 cut(s) 386
Asp700I GAANNNNTTC 1 cut(s) 351
AspS9I GGNCC 1 cut(s) 426
AsuHPI GGTGA 2 cut(s) 76, 118
AsuNHI GCTAGC 1 cut(s) 47
AvaII GGWCC 1 cut(s) 426
Bbv12I GWGCWC 1 cut(s) 11
BbvI GCAGC 2 cut(s) 38, 77
BccI CCATC 1 cut(s) 491
BciT130I CCWGG 1 cut(s) 344
BcoDI GTCTC 1 cut(s) 257
BfaI CTAG 3 cut(s) 48, 278, 511
BisI GCNGC 4 cut(s) 45, 52, 66, 362
BlsI GCNGC 4 cut(s) 46, 53, 67, 363
Bme1390I CCNGG 1 cut(s) 344
Bme18I GGWCC 1 cut(s) 426
BmgT120I GGNCC 1 cut(s) 426
BmiI GGNNCC 1 cut(s) 427
BmrFI CCNGG 1 cut(s) 344
BmrI ACTGGG 1 cut(s) 196
BmtI GCTAGC 1 cut(s) 51
BmuI ACTGGG 1 cut(s) 196
BpuEI CTTGAG 1 cut(s) 331
BsaI GGTCTC 1 cut(s) 257
BsaJI CCNNGG 2 cut(s) 256, 342
Bse1I ACTGG 3 cut(s) 129, 164, 191
BseBI CCWGG 1 cut(s) 344
BseDI CCNNGG 2 cut(s) 256, 342
BseNI ACTGG 3 cut(s) 129, 164, 191
BseXI GCAGC 2 cut(s) 38, 77
BsiHKAI GWGCWC 1 cut(s) 11
BslFI GGGAC 1 cut(s) 318
BsmAI GTCTC 1 cut(s) 257
BsmFI GGGAC 1 cut(s) 318
Bso31I GGTCTC 1 cut(s) 257
Bsp1286I GDGCHC 1 cut(s) 11
Bsp143I GATC 1 cut(s) 147
BspACI CCGC 2 cut(s) 45, 361
BspLI GGNNCC 1 cut(s) 427
BspOI GCTAGC 1 cut(s) 51
BspTNI GGTCTC 1 cut(s) 257
BsrI ACTGG 3 cut(s) 129, 164, 191
BssECI CCNNGG 2 cut(s) 256, 342
BssMI GATC 1 cut(s) 147
BssT1I CCWWGG 1 cut(s) 256
Bst2UI CCWGG 1 cut(s) 344
Bst4CI ACNGT 4 cut(s) 178, 323, 332, 461
BstC8I GCNNGC 1 cut(s) 49
BstDEI CTNAG 1 cut(s) 218
BstKTI GATC 1 cut(s) 150
BstMAI GTCTC 1 cut(s) 257
BstMBI GATC 1 cut(s) 147
BstMWI GCNNNNNNNGC 2 cut(s) 107, 116
BstNI CCWGG 1 cut(s) 344
BstSCI CCNGG 1 cut(s) 342
BstV1I GCAGC 2 cut(s) 38, 77
BtsIMutI CAGTG 1 cut(s) 136
Cac8I GCNNGC 1 cut(s) 49
Cfr13I GGNCC 1 cut(s) 426
Csp6I GTAC 2 cut(s) 207, 457
CviAII CATG 1 cut(s) 417
CviJI RGCY 5 cut(s) 51, 119, 167, 230, 277
CviKI_1 RGCY 5 cut(s) 51, 119, 167, 230, 277
CviQI GTAC 2 cut(s) 207, 457
DdeI CTNAG 1 cut(s) 218
DpnI GATC 1 cut(s) 149
DpnII GATC 1 cut(s) 147
Eco130I CCWWGG 1 cut(s) 256
Eco31I GGTCTC 1 cut(s) 257
Eco47I GGWCC 1 cut(s) 426
EcoO109I RGGNCCY 1 cut(s) 426
EcoRII CCWGG 1 cut(s) 342
EcoT14I CCWWGG 1 cut(s) 256
ErhI CCWWGG 1 cut(s) 256
FaeI CATG 1 cut(s) 420
FaiI YATR 4 cut(s) 62, 123, 401, 418
FaqI GGGAC 1 cut(s) 318
FatI CATG 1 cut(s) 416
FblI GTMKAC 1 cut(s) 27
Fnu4HI GCNGC 4 cut(s) 45, 52, 66, 362
Fsp4HI GCNGC 4 cut(s) 45, 52, 66, 362
FspBI CTAG 3 cut(s) 48, 278, 511
GluI GCNGC 4 cut(s) 45, 52, 66, 362
Hin1II CATG 1 cut(s) 420
HinfI GANTC 2 cut(s) 352, 405
HphI GGTGA 2 cut(s) 76, 118
Hpy166II GTNNAC 2 cut(s) 28, 209
Hpy188I TCNGA 1 cut(s) 414
Hpy8I GTNNAC 2 cut(s) 28, 209
Hpy99I CGWCG 1 cut(s) 26
HpyAV CCTTC 1 cut(s) 279
HpyCH4III ACNGT 4 cut(s) 178, 323, 332, 461
HpyCH4V TGCA 2 cut(s) 183, 477
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 116
HpyF3I CTNAG 1 cut(s) 218
Hsp92II CATG 1 cut(s) 420
Kzo9I GATC 1 cut(s) 147
LpnPI CCDG 6 cut(s) 142, 145, 172, 329, 356, 487
Lsp1109I GCAGC 2 cut(s) 38, 77
MaeI CTAG 3 cut(s) 48, 278, 511
MaeIII GTNAC 3 cut(s) 131, 140, 196
MalI GATC 1 cut(s) 149
MboI GATC 1 cut(s) 147
MboII GAAGA 1 cut(s) 10
MfeI CAATTG 1 cut(s) 365
MhlI GDGCHC 1 cut(s) 11
MluCI AATT 5 cut(s) 264, 347, 365, 386, 504
MmeI TCCRAC 1 cut(s) 437
MnlI CCTC 3 cut(s) 147, 215, 248
MroXI GAANNNNTTC 1 cut(s) 351
MseI TTAA 1 cut(s) 56
MspR9I CCNGG 1 cut(s) 344
MunI CAATTG 1 cut(s) 365
MvaI CCWGG 1 cut(s) 344
MwoI GCNNNNNNNGC 2 cut(s) 107, 116
NdeII GATC 1 cut(s) 147
NheI GCTAGC 1 cut(s) 47
NlaIII CATG 1 cut(s) 420
NlaIV GGNNCC 1 cut(s) 427
NmuCI GTSAC 1 cut(s) 131
PdmI GAANNNNTTC 1 cut(s) 351
PfeI GAWTC 2 cut(s) 352, 405
PkrI GCNGC 4 cut(s) 46, 53, 67, 363
PpuMI RGGWCCY 1 cut(s) 426
Psp5II RGGWCCY 1 cut(s) 426
Psp6I CCWGG 1 cut(s) 342
PspGI CCWGG 1 cut(s) 342
PspN4I GGNNCC 1 cut(s) 427
PspPI GGNCC 1 cut(s) 426
PspPPI RGGWCCY 1 cut(s) 426
PsrI GAACNNNNNNTAC 2 cut(s) 227, 259
RsaI GTAC 2 cut(s) 208, 458
RsaNI GTAC 2 cut(s) 207, 457
SaqAI TTAA 1 cut(s) 56
SatI GCNGC 4 cut(s) 45, 52, 66, 362
Sau3AI GATC 1 cut(s) 147
Sau96I GGNCC 1 cut(s) 426
ScrFI CCNGG 1 cut(s) 344
SduI GDGCHC 1 cut(s) 11
SetI ASST 6 cut(s) 53, 219, 240, 279, 288, 449
SinI GGWCC 1 cut(s) 426
SmlI CTYRAG 1 cut(s) 310
SmoI CTYRAG 1 cut(s) 310
Sse9I AATT 5 cut(s) 264, 347, 365, 386, 504
SsiI CCGC 2 cut(s) 45, 361
SspMI CTAG 3 cut(s) 48, 278, 511
StyD4I CCNGG 1 cut(s) 342
StyI CCWWGG 1 cut(s) 256
TaaI ACNGT 4 cut(s) 178, 323, 332, 461
TasI AATT 5 cut(s) 264, 347, 365, 386, 504
TauI GCSGC 2 cut(s) 47, 364
TfiI GAWTC 2 cut(s) 352, 405
Tru1I TTAA 1 cut(s) 56
Tru9I TTAA 1 cut(s) 56
TscAI CASTG 1 cut(s) 136
TseFI GTSAC 1 cut(s) 131
TseI GCWGC 2 cut(s) 51, 65
Tsp45I GTSAC 1 cut(s) 131
TspDTI ATGAA 1 cut(s) 364
TspRI CASTG 1 cut(s) 136
VpaK11BI GGWCC 1 cut(s) 426
XapI RAATTY 1 cut(s) 386
XmiI GTMKAC 1 cut(s) 27
XmnI GAANNNNTTC 1 cut(s) 351
XspI CTAG 3 cut(s) 48, 278, 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.