Rh1CG253300

L-type lectin-domain containing receptor kinase IX.1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000229
Physical Location & Seq
Reverse (-)
51718051 .. 51753860
35810 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG253300.1

Sequence Viewer

Length: 1719 bp
ATGTCTGAAAGCAGAAGCAGCAGTACGCAAGCAATCTGCTTCTGCAATATTTGCTTCCTAATTATTTTCATCAATTTCTTCTCCCACTTTGCTCATCCACTCTCCTTCAATATAAATCAGTTCGACCAGAGTGCAAATGGAGTTGTCTTTGAAGGTGATGCCCAGTTTTCATCGGGAAGGATTGAGCTCAACCCAGGCACTTATTTCGATGTTGGACATGCTATTTATGCAGAGCCTTTGCACCTATGGGACACTGCTACTGGATCACTGGCAGACTTCACTACTCATTTCACTTTCATGGTCGACTATGGTGATGAAGGGTGGAAATTCAGCGATGGAATTGCCTTTTACCTTGCTCCTGTTGGCTTCGGTATTCCACCCAACTCTGGCGGTGGTGAACTGGGATTATTCAACACCACCACCAATTTTAATGCCAAGATTGTAACCGTAGAGTTCGACTCCTGGGGAAACGAAGACTGGGATCCACATCCACTCCGGCCCCATATTGGGATCAACATCAATGAAATCTCTTCAGTTCAATACGCCGATTGGAATCCCAGTAACATGACCGGGAAGATTGGTAATGCATGGATAACTTATAACGCTACTGCCAACGACCTTACTGTGTTTTGGACATTCGAGCAAAACACAAATCCCGTTTTTCCAGGCAAATCTACTTCTTCCATTACTTACAATGTTGACTTGCGAAAGGTTCTCCCCGAAAGGGTTACAATTGGTTTTTCTGCTTCGGCCGGATTATACCTCGGGCGGCATTTTTTATGTTCATGGGAGTTTAATTCGACTTTGTTGGATAGCGATATTAGTAGAGCCGAAAGCAAGGGAAAGAAGAAAAAGATATTCTTGATACTGGACATTGCCCTACCTGGCTTCATTTTGATGCTTGGTGCAGTCATATGTTGGTTGATGGTATTATGGAATCGGAGAAACAATTACTCCGGCGAAGTCTCTGATCTTGAGAAGCTAGCCTTTCCAAAACGATTTGCTTACCAAGAATTGTTTGTTGCCACCAACGGACCACCACCAAGGTCCCCATTCTTCTTCCCACTGTCGGCCAAGGCCTCCACATCCACTGCTGGAACCGCCGTCAAGGTCGCCGCCGCCGCACCAAAATCTAAGGTGAAGGCAAATCCCAAAGTAGACGCTGATGCGGTCAAGCCCAAGAGAAACGTCAACAGGAACCCTGGCATTCTGAAGCCGATCTTCCCGATCTTCACCAAGGACTCCGCCGCCACTTCCATTATCAACCTCCACCACCTTGCCACCTCACAACAACCACTCATTGACCGTGAAAACCTTAAGTCCGAGCATTCTCATCATCATCGTCGTAGTCACCATCGTCACCTCATTCTCCCTCTACCGAATCCAACAACCGCTTCCTCCGCCACGACACTCCCTCTTCCGGCGACGACGCCCCTGCCCGAATATCTCCTACAGAATCCGCTGCCGCTGCTGATCCCGTCGCCTCGCTCCCTGTCTTCGCCTTCTCCGCCATCAAGCACCACCGAGCCTCCTCCACTGCGGTTGTCGCCGCCGACTGCGCCGTCTGCCTCTCAAAGTTCAAGCACGACGACCAGCTCTGGCTACTCCCTCTCTGCTGTCACGCCTTCCACGTATCGTGCATCGACACGTGGCTCCACTCCCAGGAGACCTGCCCGCTCTGCCGGTCGCCGATTTCCGCGTCCGACTCCGAGCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase

Protein Analysis

572

Amino Acids

62.69

Weight (kDa)

9.12

Isoelectric Point (pI)

49.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 34 - 273 9.6e-62 Legume lectin domain
Lectin_L-type_dom PF18483 50 - 258 1.1e-06 Legume lectin beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 600
AasI GACNNNNNNGTC 1 cut(s) 1561
Acc36I ACCTGC 1 cut(s) 1678
AccBSI CCGCTC 1 cut(s) 1677
AccI GTMKAC 2 cut(s) 303, 1158
AccII CGCG 1 cut(s) 1699
AclWI GGATC 5 cut(s) 271, 476, 489, 518, 1468
AcoI YGGCCR 2 cut(s) 750, 1071
AcsI RAATTY 1 cut(s) 326
AcuI CTGAAG 2 cut(s) 516, 1232
AcvI CACGTG 1 cut(s) 1649
AcyI GRCGYC 1 cut(s) 1430
AfaI GTAC 1 cut(s) 25
AfiI CCNNNNNNNGG 7 cut(s) 386, 506, 507, 724, 1069, 1420, 1662
AflII CTTAAG 1 cut(s) 1316
AflIII ACRYGT 1 cut(s) 1646
AgsI TTSAA 5 cut(s) 109, 152, 412, 539, 1581
AjnI CCWGG 6 cut(s) 193, 461, 664, 883, 1201, 1661
AjuI GAANNNNNNNTTGG 2 cut(s) 1378, 1410
AluBI AGCT 4 cut(s) 187, 982, 1596, 1713
AluI AGCT 4 cut(s) 187, 982, 1596, 1713
Alw21I GWGCWC 2 cut(s) 189, 1715
Alw26I GTCTC 2 cut(s) 970, 1660
AlwI GGATC 5 cut(s) 271, 476, 489, 518, 1468
Ama87I CYCGRG 1 cut(s) 764
AoxI GGCC 4 cut(s) 497, 750, 1071, 1077
ApeKI GCWGC 3 cut(s) 18, 1462, 1468
ApoI RAATTY 1 cut(s) 326
AspLEI GCGC 1 cut(s) 1561
AspS9I GGNCC 3 cut(s) 498, 1034, 1047
AsuC2I CCSGG 1 cut(s) 571
AsuHPI GGTGA 7 cut(s) 167, 323, 407, 1150, 1225, 1343, 1352
AsuNHI GCTAGC 1 cut(s) 982
AvaI CYCGRG 1 cut(s) 764
AvaII GGWCC 2 cut(s) 1034, 1047
BamHI GGATCC 1 cut(s) 481
BanII GRGCYC 2 cut(s) 189, 1715
BarI GAAGNNNNNNTAC 2 cut(s) 7, 39
BbrPI CACGTG 1 cut(s) 1649
BbsI GAAGAC 2 cut(s) 480, 1488
Bbv12I GWGCWC 2 cut(s) 189, 1715
BbvI GCAGC 3 cut(s) 30, 1449, 1455
BccI CCATC 4 cut(s) 329, 919, 1362, 1519
BceAI ACGGC 2 cut(s) 1088, 1546
BcgI CGANNNNNNTGC 8 cut(s) 113, 147, 187, 221, 323, 357, 1417, 1451
BciT130I CCWGG 6 cut(s) 195, 463, 666, 885, 1203, 1663
BcnI CCSGG 1 cut(s) 571
BcoDI GTCTC 2 cut(s) 970, 1660
BfaI CTAG 1 cut(s) 983
BfmI CTRYAG 1 cut(s) 1451
BfrI CTTAAG 1 cut(s) 1316
BfuAI ACCTGC 1 cut(s) 1678
Bme1390I CCNGG 7 cut(s) 195, 463, 571, 666, 885, 1203, 1663
Bme18I GGWCC 2 cut(s) 1034, 1047
BmeT110I CYCGRG 1 cut(s) 764
BmgT120I GGNCC 3 cut(s) 498, 1034, 1047
BmiI GGNNCC 6 cut(s) 483, 500, 1049, 1099, 1199, 1654
BmrFI CCNGG 7 cut(s) 195, 463, 571, 666, 885, 1203, 1663
BmrI ACTGGG 4 cut(s) 157, 410, 487, 552
BmsI GCATC 4 cut(s) 148, 888, 1156, 1649
BmtI GCTAGC 1 cut(s) 986
BmuI ACTGGG 4 cut(s) 157, 410, 487, 552
BpiI GAAGAC 2 cut(s) 480, 1488
BplI GAGNNNNNCTC 2 cut(s) 443, 475
BpuEI CTTGAG 1 cut(s) 995
BpuMI CCSGG 1 cut(s) 571
BsaAI YACGTR 2 cut(s) 1632, 1649
BsaBI GATNNNNATC 3 cut(s) 486, 515, 552
BsaHI GRCGYC 1 cut(s) 1430
BsaI GGTCTC 1 cut(s) 1660
BsaJI CCNNGG 8 cut(s) 193, 462, 763, 1043, 1074, 1201, 1236, 1661
BsaXI ACNNNNNCTCC 6 cut(s) 477, 507, 938, 968, 1513, 1543
Bsc4I CCNNNNNNNGG 7 cut(s) 386, 506, 507, 724, 1069, 1420, 1662
Bse118I RCCGGY 1 cut(s) 1682
Bse1I ACTGG 7 cut(s) 163, 265, 273, 405, 482, 558, 873
Bse3DI GCAATG 1 cut(s) 873
Bse8I GATNNNNATC 3 cut(s) 486, 515, 552
BseBI CCWGG 6 cut(s) 195, 463, 666, 885, 1203, 1663
BseDI CCNNGG 8 cut(s) 193, 462, 763, 1043, 1074, 1201, 1236, 1661
BseGI GGATG 3 cut(s) 94, 487, 1085
BseJI GATNNNNATC 3 cut(s) 486, 515, 552
BseLI CCNNNNNNNGG 7 cut(s) 386, 506, 507, 724, 1069, 1420, 1662
BseMI GCAATG 1 cut(s) 873
BseNI ACTGG 7 cut(s) 163, 265, 273, 405, 482, 558, 873
BseRI GAGGAG 1 cut(s) 1521
BseX3I CGGCCG 1 cut(s) 750
BseXI GCAGC 3 cut(s) 30, 1449, 1455
BsgI GTGCAG 1 cut(s) 927
Bsh1236I CGCG 1 cut(s) 1699
Bsh1285I CGRYCG 2 cut(s) 753, 1687
BshFI GGCC 4 cut(s) 499, 752, 1073, 1079
BsiEI CGRYCG 2 cut(s) 753, 1687
BsiHKAI GWGCWC 2 cut(s) 189, 1715
BsiHKCI CYCGRG 1 cut(s) 764
BsiSI CCGG 6 cut(s) 496, 570, 753, 957, 1421, 1683
BslFI GGGAC 2 cut(s) 263, 1033
BslI CCNNNNNNNGG 7 cut(s) 386, 506, 507, 724, 1069, 1420, 1662
BsmAI GTCTC 2 cut(s) 970, 1660
BsmFI GGGAC 2 cut(s) 263, 1033
BsmI GAATGC 2 cut(s) 1206, 1327
BsnI GGCC 4 cut(s) 499, 752, 1073, 1079
Bso31I GGTCTC 1 cut(s) 1660
BsoBI CYCGRG 1 cut(s) 764
Bsp1286I GDGCHC 2 cut(s) 189, 1715
Bsp143I GATC 7 cut(s) 263, 481, 510, 970, 1218, 1227, 1473
BspANI GGCC 4 cut(s) 499, 752, 1073, 1079
BspFNI CGCG 1 cut(s) 1699
BspHI TCATGA 1 cut(s) 1715
BspLI GGNNCC 6 cut(s) 483, 500, 1049, 1099, 1199, 1654
BspMI ACCTGC 1 cut(s) 1678
BspOI GCTAGC 1 cut(s) 986
BspPI GGATC 5 cut(s) 271, 476, 489, 518, 1468
BspTI CTTAAG 1 cut(s) 1316
BspTNI GGTCTC 1 cut(s) 1660
BsrBI CCGCTC 1 cut(s) 1677
BsrDI GCAATG 1 cut(s) 873
BsrFI RCCGGY 1 cut(s) 1682
BsrI ACTGG 7 cut(s) 163, 265, 273, 405, 482, 558, 873
BssAI RCCGGY 1 cut(s) 1682
BssECI CCNNGG 8 cut(s) 193, 462, 763, 1043, 1074, 1201, 1236, 1661
BssMI GATC 7 cut(s) 263, 481, 510, 970, 1218, 1227, 1473
BssNI GRCGYC 1 cut(s) 1430
BssT1I CCWWGG 3 cut(s) 1043, 1074, 1236
Bst2UI CCWGG 6 cut(s) 195, 463, 666, 885, 1203, 1663
Bst4CI ACNGT 4 cut(s) 448, 625, 1068, 1307
Bst6I CTCTTC 2 cut(s) 535, 1422
BstACI GRCGYC 1 cut(s) 1430
BstAFI CTTAAG 1 cut(s) 1316
BstAPI GCANNNNNTGC 1 cut(s) 51
BstBAI YACGTR 2 cut(s) 1632, 1649
BstC8I GCNNGC 3 cut(s) 30, 984, 1675
BstDEI CTNAG 1 cut(s) 1134
BstF5I GGATG 3 cut(s) 94, 487, 1085
BstFNI CGCG 1 cut(s) 1699
BstHHI GCGC 1 cut(s) 1561
BstKTI GATC 7 cut(s) 266, 484, 513, 973, 1221, 1230, 1476
BstMAI GTCTC 2 cut(s) 970, 1660
BstMBI GATC 7 cut(s) 263, 481, 510, 970, 1218, 1227, 1473
BstMCI CGRYCG 2 cut(s) 753, 1687
BstNI CCWGG 6 cut(s) 195, 463, 666, 885, 1203, 1663
BstNSI RCATGY 1 cut(s) 221
BstSCI CCNGG 7 cut(s) 193, 461, 569, 664, 883, 1201, 1661
BstSFI CTRYAG 1 cut(s) 1451
BstUI CGCG 1 cut(s) 1699
BstV1I GCAGC 3 cut(s) 30, 1449, 1455
BstV2I GAAGAC 2 cut(s) 480, 1488
BstX2I RGATCY 1 cut(s) 481
BstYI RGATCY 1 cut(s) 481
BstZI CGGCCG 1 cut(s) 750
BsuRI GGCC 4 cut(s) 499, 752, 1073, 1079
BtgZI GCGATG 1 cut(s) 348
BtsCI GGATG 3 cut(s) 94, 487, 1085
BtsI GCAGTG 3 cut(s) 252, 1089, 1535
BtsIMutI CAGTG 5 cut(s) 252, 266, 1064, 1089, 1535
BveI ACCTGC 1 cut(s) 1678
Cac8I GCNNGC 3 cut(s) 30, 984, 1675
CciI TCATGA 1 cut(s) 1715
CfoI GCGC 1 cut(s) 1561
Cfr10I RCCGGY 1 cut(s) 1682
Cfr13I GGNCC 3 cut(s) 498, 1034, 1047
CseI GACGC 3 cut(s) 1169, 1438, 1688
Csp6I GTAC 1 cut(s) 24
CspCI CAANNNNNGTGG 2 cut(s) 1524, 1559
CviAII CATG 6 cut(s) 218, 298, 565, 588, 786, 1716
CviQI GTAC 1 cut(s) 24
DdeI CTNAG 1 cut(s) 1134
DpnI GATC 7 cut(s) 265, 483, 512, 972, 1220, 1229, 1475
DpnII GATC 7 cut(s) 263, 481, 510, 970, 1218, 1227, 1473
DrdI GACNNNNNNGTC 1 cut(s) 1561
DseDI GACNNNNNNGTC 1 cut(s) 1561
EaeI YGGCCR 2 cut(s) 750, 1071
EagI CGGCCG 1 cut(s) 750
Eam1104I CTCTTC 2 cut(s) 535, 1422
EarI CTCTTC 2 cut(s) 535, 1422
EciI GGCGGA 3 cut(s) 1234, 1390, 1497
Ecl136II GAGCTC 2 cut(s) 187, 1713
EclXI CGGCCG 1 cut(s) 750
Eco130I CCWWGG 3 cut(s) 1043, 1074, 1236
Eco147I AGGCCT 1 cut(s) 1079
Eco24I GRGCYC 2 cut(s) 189, 1715
Eco31I GGTCTC 1 cut(s) 1660
Eco47I GGWCC 2 cut(s) 1034, 1047
Eco52I CGGCCG 1 cut(s) 750
Eco53kI GAGCTC 2 cut(s) 187, 1713
Eco57I CTGAAG 2 cut(s) 516, 1232
Eco72I CACGTG 1 cut(s) 1649
Eco88I CYCGRG 1 cut(s) 764
EcoICRI GAGCTC 2 cut(s) 187, 1713
EcoO109I RGGNCCY 1 cut(s) 1047
EcoRII CCWGG 6 cut(s) 193, 461, 664, 883, 1201, 1661
EcoT14I CCWWGG 3 cut(s) 1043, 1074, 1236
EcoT22I ATGCAT 1 cut(s) 589
EcoT38I GRGCYC 2 cut(s) 189, 1715
ErhI CCWWGG 3 cut(s) 1043, 1074, 1236
FaeI CATG 6 cut(s) 221, 301, 568, 591, 789, 1719
FalI AAGNNNNNCTT 6 cut(s) 845, 877, 971, 1003, 1205, 1237
FaqI GGGAC 2 cut(s) 263, 1033
FatI CATG 6 cut(s) 217, 297, 564, 587, 785, 1715
FauI CCCGC 1 cut(s) 1682
FauNDI CATATG 1 cut(s) 914
FblI GTMKAC 2 cut(s) 303, 1158
FokI GGATG 3 cut(s) 81, 474, 1072
FriOI GRGCYC 2 cut(s) 189, 1715
FspBI CTAG 1 cut(s) 983
GlaI GCGC 1 cut(s) 1560
HaeIII GGCC 4 cut(s) 499, 752, 1073, 1079
HapII CCGG 6 cut(s) 496, 570, 753, 957, 1421, 1683
HgaI GACGC 3 cut(s) 1169, 1438, 1688
HhaI GCGC 1 cut(s) 1561
Hin1I GRCGYC 1 cut(s) 1430
Hin1II CATG 6 cut(s) 221, 301, 568, 591, 789, 1719
Hin6I GCGC 1 cut(s) 1559
HinP1I GCGC 1 cut(s) 1559
HincII GTYRAC 3 cut(s) 304, 700, 1192
HindII GTYRAC 3 cut(s) 304, 700, 1192
HinfI GANTC 7 cut(s) 458, 553, 937, 1241, 1381, 1456, 1705
HpaII CCGG 6 cut(s) 496, 570, 753, 957, 1421, 1683
HphI GGTGA 7 cut(s) 167, 323, 407, 1150, 1225, 1343, 1352
Hpy166II GTNNAC 5 cut(s) 304, 398, 700, 1159, 1192
Hpy188I TCNGA 7 cut(s) 7, 942, 970, 1212, 1324, 1704, 1710
Hpy188III TCNNGA 5 cut(s) 174, 862, 974, 1225, 1716
Hpy8I GTNNAC 5 cut(s) 304, 398, 700, 1159, 1192
Hpy99I CGWCG 5 cut(s) 1347, 1429, 1432, 1483, 1591
HpyAV CCTTC 7 cut(s) 115, 146, 171, 311, 1135, 1512, 1635
HpyCH4III ACNGT 4 cut(s) 448, 625, 1068, 1307
HpyCH4IV ACGT 3 cut(s) 1188, 1631, 1648
HpyCH4V TGCA 7 cut(s) 45, 134, 230, 241, 587, 908, 1640
HpyF3I CTNAG 1 cut(s) 1134
HpySE526I ACGT 3 cut(s) 1188, 1631, 1648
Hsp92I GRCGYC 1 cut(s) 1430
Hsp92II CATG 6 cut(s) 221, 301, 568, 591, 789, 1719
HspAI GCGC 1 cut(s) 1559
Kzo9I GATC 7 cut(s) 263, 481, 510, 970, 1218, 1227, 1473
LmnI GCTCC 3 cut(s) 361, 1493, 1658
Lsp1109I GCAGC 3 cut(s) 30, 1449, 1455
LweI GCATC 4 cut(s) 148, 888, 1156, 1649
MaeI CTAG 1 cut(s) 983
MaeII ACGT 3 cut(s) 1188, 1631, 1648
MaeIII GTNAC 6 cut(s) 442, 560, 727, 1349, 1358, 1618
MalI GATC 7 cut(s) 265, 483, 512, 972, 1220, 1229, 1475
MbiI CCGCTC 1 cut(s) 1677
MboI GATC 7 cut(s) 263, 481, 510, 970, 1218, 1227, 1473
MfeI CAATTG 1 cut(s) 732
MflI RGATCY 1 cut(s) 481
MhlI GDGCHC 2 cut(s) 189, 1715
MluCI AATT 9 cut(s) 60, 73, 326, 339, 424, 732, 796, 949, 1013
MlyI GAGTC 3 cut(s) 452, 1235, 1699
MmeI TCCRAC 3 cut(s) 193, 789, 1409
Mph1103I ATGCAT 1 cut(s) 589
MseI TTAA 3 cut(s) 429, 795, 1317
MslI CAYNNNNRTG 2 cut(s) 296, 896
MspA1I CMGCKG 2 cut(s) 1462, 1468
MspCI CTTAAG 1 cut(s) 1316
MspI CCGG 6 cut(s) 496, 570, 753, 957, 1421, 1683
MspR9I CCNGG 7 cut(s) 195, 463, 571, 666, 885, 1203, 1663
MunI CAATTG 1 cut(s) 732
Mva1269I GAATGC 2 cut(s) 1206, 1327
MvaI CCWGG 6 cut(s) 195, 463, 666, 885, 1203, 1663
MvnI CGCG 1 cut(s) 1699
NciI CCSGG 1 cut(s) 571
NdeI CATATG 1 cut(s) 914
NdeII GATC 7 cut(s) 263, 481, 510, 970, 1218, 1227, 1473
NheI GCTAGC 1 cut(s) 982
NlaIII CATG 6 cut(s) 221, 301, 568, 591, 789, 1719
NlaIV GGNNCC 6 cut(s) 483, 500, 1049, 1099, 1199, 1654
NmuCI GTSAC 3 cut(s) 1349, 1358, 1618
NsiI ATGCAT 1 cut(s) 589
NspI RCATGY 1 cut(s) 221
PagI TCATGA 1 cut(s) 1715
PceI AGGCCT 1 cut(s) 1079
PcsI WCGNNNNNNNCGW 1 cut(s) 1628
PctI GAATGC 2 cut(s) 1206, 1327
PfeI GAWTC 4 cut(s) 553, 937, 1381, 1456
PleI GAGTC 3 cut(s) 452, 1235, 1699
PmaCI CACGTG 1 cut(s) 1649
PmlI CACGTG 1 cut(s) 1649
PpsI GAGTC 3 cut(s) 452, 1235, 1699
Ppu21I YACGTR 2 cut(s) 1632, 1649
PpuMI RGGWCCY 1 cut(s) 1047
PsiI TTATAA 1 cut(s) 600
Psp124BI GAGCTC 2 cut(s) 189, 1715
Psp5II RGGWCCY 1 cut(s) 1047
Psp6I CCWGG 6 cut(s) 193, 461, 664, 883, 1201, 1661
PspCI CACGTG 1 cut(s) 1649
PspGI CCWGG 6 cut(s) 193, 461, 664, 883, 1201, 1661
PspN4I GGNNCC 6 cut(s) 483, 500, 1049, 1099, 1199, 1654
PspPI GGNCC 3 cut(s) 498, 1034, 1047
PspPPI RGGWCCY 1 cut(s) 1047
PsuI RGATCY 1 cut(s) 481
RsaI GTAC 1 cut(s) 25
RsaNI GTAC 1 cut(s) 24
RseI CAYNNNNRTG 2 cut(s) 296, 896
SacI GAGCTC 2 cut(s) 189, 1715
SalI GTCGAC 1 cut(s) 302
SaqAI TTAA 3 cut(s) 429, 795, 1317
Sau3AI GATC 7 cut(s) 263, 481, 510, 970, 1218, 1227, 1473
Sau96I GGNCC 3 cut(s) 498, 1034, 1047
SchI GAGTC 3 cut(s) 452, 1235, 1699
ScrFI CCNGG 7 cut(s) 195, 463, 571, 666, 885, 1203, 1663
SduI GDGCHC 2 cut(s) 189, 1715
SfaNI GCATC 4 cut(s) 148, 888, 1156, 1649
SfcI CTRYAG 1 cut(s) 1451
SinI GGWCC 2 cut(s) 1034, 1047
SmiMI CAYNNNNRTG 2 cut(s) 296, 896
SmlI CTYRAG 2 cut(s) 974, 1316
SmoI CTYRAG 2 cut(s) 974, 1316
Sse9I AATT 9 cut(s) 60, 73, 326, 339, 424, 732, 796, 949, 1013
SseBI AGGCCT 1 cut(s) 1079
SspI AATATT 1 cut(s) 49
SspMI CTAG 1 cut(s) 983
SstI GAGCTC 2 cut(s) 189, 1715
StuI AGGCCT 1 cut(s) 1079
StyD4I CCNGG 7 cut(s) 193, 461, 569, 664, 883, 1201, 1661
StyI CCWWGG 3 cut(s) 1043, 1074, 1236
TaaI ACNGT 4 cut(s) 448, 625, 1068, 1307
TaiI ACGT 3 cut(s) 1191, 1634, 1651
TaqI TCGA 7 cut(s) 123, 207, 303, 456, 639, 800, 1643
TasI AATT 9 cut(s) 60, 73, 326, 339, 424, 732, 796, 949, 1013
TauI GCSGC 7 cut(s) 772, 1118, 1121, 1124, 1250, 1468, 1552
TfiI GAWTC 4 cut(s) 553, 937, 1381, 1456
Tru1I TTAA 3 cut(s) 429, 795, 1317
Tru9I TTAA 3 cut(s) 429, 795, 1317
TscAI CASTG 5 cut(s) 259, 273, 1071, 1096, 1542
TseFI GTSAC 3 cut(s) 1349, 1358, 1618
TseI GCWGC 3 cut(s) 18, 1462, 1468
Tsp45I GTSAC 3 cut(s) 1349, 1358, 1618
TspDTI ATGAA 7 cut(s) 58, 159, 286, 330, 537, 774, 880
TspGWI ACGGA 1 cut(s) 1047
TspRI CASTG 5 cut(s) 259, 273, 1071, 1096, 1542
Vha464I CTTAAG 1 cut(s) 1316
VpaK11BI GGWCC 2 cut(s) 1034, 1047
XapI RAATTY 1 cut(s) 326
XceI RCATGY 1 cut(s) 221
XcmI CCANNNNNNNNNTGG 1 cut(s) 134
XmiI GTMKAC 2 cut(s) 303, 1158
XspI CTAG 1 cut(s) 983
Zsp2I ATGCAT 1 cut(s) 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.