Rh5CG093600

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
7428801 .. 7429223
423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG093600.1

Sequence Viewer

Length: 423 bp
ATGGAAGTCATTAACCAAGTCTCACCGGTGTCTCTCGCAAGTCTTCGACCTCGACCTCTTCTTCGGTTTCCAGTCTCAACGTACTATATATATCCTCCAAACATTTTGCACATCCAAATCCCGCAACCATATTCACCTACGTACACAATGAAGAGCACTTGGTTCTTCCTCGTCTACTCTTGTTGTATGGCGGTTAGCTGCTTAACTGCAGCACCACAAACTAACATCACCACAGACAAATATGCTCTTCTTGCTCTCAAAGCCCGTATCACCAGTGATCCTCATAACTTGATCTTGACCAACTGGTCAATCACCACTCCTGTTTGCAACTGGGTTGGTGTTGCTTGTGGTAAACACCATCATCGAGTCACAGCCTTGAACCTCTCCTACTTTGGTCTCGAAGGCACTATTCTCCACAGCTAG

Protein Analysis

140

Amino Acids

15.72

Weight (kDa)

9.08

Isoelectric Point (pI)

53.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 78 - 116 5e-10 Leucine rich repeat N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 304
AccI GTMKAC 1 cut(s) 174
AciI CCGC 2 cut(s) 122, 191
AclWI GGATC 1 cut(s) 272
AfaI GTAC 2 cut(s) 83, 143
AgeI ACCGGT 1 cut(s) 25
AgsI TTSAA 1 cut(s) 379
AluBI AGCT 2 cut(s) 198, 420
AluI AGCT 2 cut(s) 198, 420
Alw21I GWGCWC 1 cut(s) 158
Alw26I GTCTC 4 cut(s) 25, 36, 79, 401
AlwI GGATC 1 cut(s) 272
ApeKI GCWGC 2 cut(s) 198, 209
ArsI GACNNNNNNTTYG 2 cut(s) 45, 77
AsiGI ACCGGT 1 cut(s) 25
AsuHPI GGTGA 5 cut(s) 15, 126, 220, 262, 304
BbsI GAAGAC 1 cut(s) 35
Bbv12I GWGCWC 1 cut(s) 158
BbvI GCAGC 2 cut(s) 185, 221
BccI CCATC 1 cut(s) 366
BcoDI GTCTC 4 cut(s) 25, 36, 79, 401
BfaI CTAG 1 cut(s) 421
BfmI CTRYAG 1 cut(s) 207
BisI GCNGC 2 cut(s) 199, 210
BlsI GCNGC 2 cut(s) 200, 211
BmrI ACTGGG 1 cut(s) 340
BmuI ACTGGG 1 cut(s) 340
BpiI GAAGAC 1 cut(s) 35
BsaAI YACGTR 1 cut(s) 141
BsaI GGTCTC 1 cut(s) 401
BsaWI WCCGGW 1 cut(s) 25
Bse118I RCCGGY 1 cut(s) 25
Bse1I ACTGG 4 cut(s) 71, 273, 308, 335
BseGI GGATG 1 cut(s) 111
BseNI ACTGG 4 cut(s) 71, 273, 308, 335
BseXI GCAGC 2 cut(s) 185, 221
BshTI ACCGGT 1 cut(s) 25
BsiHKAI GWGCWC 1 cut(s) 158
BsiSI CCGG 1 cut(s) 26
BsmAI GTCTC 4 cut(s) 25, 36, 79, 401
Bso31I GGTCTC 1 cut(s) 401
Bsp1286I GDGCHC 1 cut(s) 158
Bsp143I GATC 2 cut(s) 277, 291
BspACI CCGC 2 cut(s) 122, 191
BspMAI CTGCAG 1 cut(s) 211
BspPI GGATC 1 cut(s) 272
BspQI GCTCTTC 2 cut(s) 146, 252
BspTNI GGTCTC 1 cut(s) 401
BsrFI RCCGGY 1 cut(s) 25
BsrI ACTGG 4 cut(s) 71, 273, 308, 335
BssAI RCCGGY 1 cut(s) 25
BssMI GATC 2 cut(s) 277, 291
Bst6I CTCTTC 3 cut(s) 63, 146, 252
BstBAI YACGTR 1 cut(s) 141
BstF5I GGATG 1 cut(s) 111
BstKTI GATC 2 cut(s) 280, 294
BstMAI GTCTC 4 cut(s) 25, 36, 79, 401
BstMBI GATC 2 cut(s) 277, 291
BstMWI GCNNNNNNNGC 2 cut(s) 251, 260
BstSFI CTRYAG 1 cut(s) 207
BstSNI TACGTA 1 cut(s) 141
BstV1I GCAGC 2 cut(s) 185, 221
BstV2I GAAGAC 1 cut(s) 35
BtsCI GGATG 1 cut(s) 111
BtsIMutI CAGTG 1 cut(s) 280
Cfr10I RCCGGY 1 cut(s) 25
Csp6I GTAC 2 cut(s) 82, 142
CspAI ACCGGT 1 cut(s) 25
CviJI RGCY 4 cut(s) 198, 263, 374, 420
CviKI_1 RGCY 4 cut(s) 198, 263, 374, 420
CviQI GTAC 2 cut(s) 82, 142
DpnI GATC 2 cut(s) 279, 293
DpnII GATC 2 cut(s) 277, 291
DrdI GACNNNNNNGTC 1 cut(s) 304
DseDI GACNNNNNNGTC 1 cut(s) 304
Eam1104I CTCTTC 3 cut(s) 63, 146, 252
EarI CTCTTC 3 cut(s) 63, 146, 252
Eco105I TACGTA 1 cut(s) 141
Eco31I GGTCTC 1 cut(s) 401
FaiI YATR 7 cut(s) 87, 89, 91, 130, 188, 243, 285
FauI CCCGC 1 cut(s) 129
FblI GTMKAC 1 cut(s) 174
Fnu4HI GCNGC 2 cut(s) 199, 210
FokI GGATG 1 cut(s) 98
Fsp4HI GCNGC 2 cut(s) 199, 210
FspBI CTAG 1 cut(s) 421
GluI GCNGC 2 cut(s) 199, 210
HapII CCGG 1 cut(s) 26
HinfI GANTC 1 cut(s) 366
HpaII CCGG 1 cut(s) 26
HphI GGTGA 5 cut(s) 15, 126, 220, 262, 304
Hpy166II GTNNAC 3 cut(s) 144, 175, 353
Hpy188III TCNNGA 2 cut(s) 295, 398
Hpy8I GTNNAC 3 cut(s) 144, 175, 353
HpyAV CCTTC 1 cut(s) 395
HpyCH4IV ACGT 2 cut(s) 80, 140
HpyCH4V TGCA 3 cut(s) 109, 209, 327
HpyF10VI GCNNNNNNNGC 2 cut(s) 251, 260
HpySE526I ACGT 2 cut(s) 80, 140
Kzo9I GATC 2 cut(s) 277, 291
LguI GCTCTTC 2 cut(s) 146, 252
LpnPI CCDG 6 cut(s) 39, 84, 286, 289, 316, 333
Lsp1109I GCAGC 2 cut(s) 185, 221
MaeI CTAG 1 cut(s) 421
MaeII ACGT 2 cut(s) 80, 140
MaeIII GTNAC 1 cut(s) 367
MalI GATC 2 cut(s) 279, 293
MboI GATC 2 cut(s) 277, 291
MboII GAAGA 6 cut(s) 35, 50, 53, 157, 163, 239
MhlI GDGCHC 1 cut(s) 158
MlyI GAGTC 1 cut(s) 375
MnlI CCTC 6 cut(s) 60, 66, 105, 179, 291, 392
MseI TTAA 2 cut(s) 12, 203
MspI CCGG 1 cut(s) 26
MwoI GCNNNNNNNGC 2 cut(s) 251, 260
NdeII GATC 2 cut(s) 277, 291
NmuCI GTSAC 1 cut(s) 367
PciSI GCTCTTC 2 cut(s) 146, 252
PinAI ACCGGT 1 cut(s) 25
PkrI GCNGC 2 cut(s) 200, 211
PleI GAGTC 1 cut(s) 374
PpsI GAGTC 1 cut(s) 374
Ppu21I YACGTR 1 cut(s) 141
PsrI GAACNNNNNNTAC 2 cut(s) 371, 403
PstI CTGCAG 1 cut(s) 211
RsaI GTAC 2 cut(s) 83, 143
RsaNI GTAC 2 cut(s) 82, 142
SapI GCTCTTC 2 cut(s) 146, 252
SaqAI TTAA 2 cut(s) 12, 203
SatI GCNGC 2 cut(s) 199, 210
Sau3AI GATC 2 cut(s) 277, 291
SchI GAGTC 1 cut(s) 375
SduI GDGCHC 1 cut(s) 158
SetI ASST 8 cut(s) 52, 58, 83, 139, 143, 200, 384, 422
SfcI CTRYAG 1 cut(s) 207
SgrAI CRCCGGYG 1 cut(s) 25
SnaBI TACGTA 1 cut(s) 141
SsiI CCGC 2 cut(s) 122, 191
SspMI CTAG 1 cut(s) 421
TaiI ACGT 2 cut(s) 83, 143
TaqI TCGA 4 cut(s) 46, 52, 364, 399
Tru1I TTAA 2 cut(s) 12, 203
Tru9I TTAA 2 cut(s) 12, 203
TscAI CASTG 1 cut(s) 280
TseFI GTSAC 1 cut(s) 367
TseI GCWGC 2 cut(s) 198, 209
Tsp45I GTSAC 1 cut(s) 367
TspDTI ATGAA 1 cut(s) 164
TspRI CASTG 1 cut(s) 280
XmiI GTMKAC 1 cut(s) 174
XspI CTAG 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.