FvH4_3g37750

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000229
Physical Location & Seq
Reverse (-)
32343263 .. 32344122
860 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g37750.t1

Sequence Viewer

Length: 453 bp
ATGGCCTTGCTTTCTCAGTCTGTTTTTGGACTTTTGGTCATGGAACTTGCTGCTTTTGCTGCTGAAGTGATGATCTATCATCTATATGTTCATGCTGTTCTAAATAACCGAAAAAAACCCGATATAAACCAGAGAAAAACCAAACCGAACACAATTGTCCTATTAACTACGGCAGCAGCACAAACCAACCTCAGCACAGACCAATCTGCTCTTCTTGCTCTCAAAGCCCATATCACCAGGGACCCTCATAACTTGATCTTCACCAATTGGTCAACCACCACATCTGTTTGCAACTGGGTTGGCGTTACCTGTGGTGCACGCCACCTTAGAGCTACAGCCTTGAACCTCTCCTACCTTGGTCTCCAAGGCACTATTCCTCCACAGCTAGGCAACCTATCGTTTCTCGTTTCTATTAACTTGAGAAATAACAGTTTCCACGGTCCCTTACCCTAG

Protein Analysis

151

Amino Acids

16.4

Weight (kDa)

9.83

Isoelectric Point (pI)

21.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 65 - 104 4.4e-12 Leucine rich repeat N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 84
AfiI CCNNNNNNNGG 1 cut(s) 386
AgsI TTSAA 1 cut(s) 343
AhdI GACNNNNNGTC 1 cut(s) 35
AjnI CCWGG 1 cut(s) 236
AjuI GAANNNNNNNTTGG 4 cut(s) 195, 227, 357, 389
AluBI AGCT 2 cut(s) 332, 385
AluI AGCT 2 cut(s) 332, 385
Alw21I GWGCWC 1 cut(s) 319
Alw26I GTCTC 1 cut(s) 365
Alw44I GTGCAC 1 cut(s) 315
AoxI GGCC 1 cut(s) 3
ApaLI GTGCAC 1 cut(s) 315
ApeKI GCWGC 4 cut(s) 50, 59, 173, 176
AspS9I GGNCC 2 cut(s) 241, 440
AsuHPI GGTGA 2 cut(s) 226, 253
AvaII GGWCC 2 cut(s) 241, 440
BaeGI GKGCMC 1 cut(s) 319
Bbv12I GWGCWC 1 cut(s) 319
BbvCI CCTCAGC 1 cut(s) 191
BbvI GCAGC 4 cut(s) 37, 46, 185, 188
BceAI ACGGC 1 cut(s) 186
BciT130I CCWGG 1 cut(s) 238
BcoDI GTCTC 1 cut(s) 365
BfaI CTAG 2 cut(s) 386, 451
BfmI CTRYAG 1 cut(s) 333
BisI GCNGC 4 cut(s) 51, 60, 174, 177
BlsI GCNGC 4 cut(s) 52, 61, 175, 178
Bme1390I CCNGG 1 cut(s) 238
Bme18I GGWCC 2 cut(s) 241, 440
BmeRI GACNNNNNGTC 1 cut(s) 35
BmgT120I GGNCC 2 cut(s) 241, 440
BmiI GGNNCC 3 cut(s) 242, 243, 442
BmrFI CCNGG 1 cut(s) 238
BmrI ACTGGG 1 cut(s) 304
BmuI ACTGGG 1 cut(s) 304
Bpu10I CCTNAGC 1 cut(s) 191
BpuEI CTTGAG 1 cut(s) 439
BsaI GGTCTC 1 cut(s) 365
BsaJI CCNNGG 4 cut(s) 237, 355, 364, 436
BsaXI ACNNNNNCTCC 2 cut(s) 361, 391
Bsc4I CCNNNNNNNGG 1 cut(s) 386
Bse1I ACTGG 1 cut(s) 299
BseBI CCWGG 1 cut(s) 238
BseDI CCNNGG 4 cut(s) 237, 355, 364, 436
BseLI CCNNNNNNNGG 1 cut(s) 386
BseMII CTCAG 2 cut(s) 29, 205
BseNI ACTGG 1 cut(s) 299
BseSI GKGCMC 1 cut(s) 319
BseXI GCAGC 4 cut(s) 37, 46, 185, 188
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 319
BslFI GGGAC 2 cut(s) 254, 426
BslI CCNNNNNNNGG 1 cut(s) 386
BsmAI GTCTC 1 cut(s) 365
BsmFI GGGAC 2 cut(s) 254, 426
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 365
Bsp1286I GDGCHC 1 cut(s) 319
Bsp143I GATC 2 cut(s) 72, 255
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 28, 204
BspLI GGNNCC 3 cut(s) 242, 243, 442
BspQI GCTCTTC 1 cut(s) 216
BspTNI GGTCTC 1 cut(s) 365
BsrI ACTGG 1 cut(s) 299
BssECI CCNNGG 4 cut(s) 237, 355, 364, 436
BssMI GATC 2 cut(s) 72, 255
BssT1I CCWWGG 2 cut(s) 355, 364
Bst2UI CCWGG 1 cut(s) 238
Bst4CI ACNGT 2 cut(s) 431, 440
Bst6I CTCTTC 1 cut(s) 216
BstC8I GCNNGC 1 cut(s) 319
BstDEI CTNAG 3 cut(s) 15, 191, 326
BstDSI CCRYGG 1 cut(s) 436
BstKTI GATC 2 cut(s) 75, 258
BstMAI GTCTC 1 cut(s) 365
BstMBI GATC 2 cut(s) 72, 255
BstMWI GCNNNNNNNGC 4 cut(s) 56, 59, 215, 224
BstNI CCWGG 1 cut(s) 238
BstSCI CCNGG 1 cut(s) 236
BstSFI CTRYAG 1 cut(s) 333
BstSLI GKGCMC 1 cut(s) 319
BstV1I GCAGC 4 cut(s) 37, 46, 185, 188
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 436
Cac8I GCNNGC 1 cut(s) 319
Cfr13I GGNCC 2 cut(s) 241, 440
CviAII CATG 2 cut(s) 40, 92
CviJI RGCY 5 cut(s) 5, 227, 332, 338, 385
CviKI_1 RGCY 5 cut(s) 5, 227, 332, 338, 385
DdeI CTNAG 3 cut(s) 15, 191, 326
DpnI GATC 2 cut(s) 74, 257
DpnII GATC 2 cut(s) 72, 255
DriI GACNNNNNGTC 1 cut(s) 35
Eam1104I CTCTTC 1 cut(s) 216
Eam1105I GACNNNNNGTC 1 cut(s) 35
EarI CTCTTC 1 cut(s) 216
Eco130I CCWWGG 2 cut(s) 355, 364
Eco31I GGTCTC 1 cut(s) 365
Eco47I GGWCC 2 cut(s) 241, 440
Eco57I CTGAAG 1 cut(s) 84
EcoO109I RGGNCCY 1 cut(s) 241
EcoRII CCWGG 1 cut(s) 236
EcoT14I CCWWGG 2 cut(s) 355, 364
ErhI CCWWGG 2 cut(s) 355, 364
FaeI CATG 2 cut(s) 43, 95
FaiI YATR 7 cut(s) 41, 85, 87, 93, 125, 231, 249
FaqI GGGAC 2 cut(s) 254, 426
FatI CATG 2 cut(s) 39, 91
Fnu4HI GCNGC 4 cut(s) 51, 60, 174, 177
Fsp4HI GCNGC 4 cut(s) 51, 60, 174, 177
FspBI CTAG 2 cut(s) 386, 451
GluI GCNGC 4 cut(s) 51, 60, 174, 177
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 2 cut(s) 43, 95
HincII GTYRAC 1 cut(s) 273
HindII GTYRAC 1 cut(s) 273
HphI GGTGA 2 cut(s) 226, 253
Hpy166II GTNNAC 2 cut(s) 273, 317
Hpy8I GTNNAC 2 cut(s) 273, 317
HpyCH4III ACNGT 2 cut(s) 431, 440
HpyCH4V TGCA 2 cut(s) 291, 317
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 59, 215, 224
HpyF3I CTNAG 3 cut(s) 15, 191, 326
Hsp92II CATG 2 cut(s) 43, 95
KflI GGGWCCC 1 cut(s) 241
Kzo9I GATC 2 cut(s) 72, 255
LguI GCTCTTC 1 cut(s) 216
LpnPI CCDG 5 cut(s) 143, 223, 250, 280, 322
Lsp1109I GCAGC 4 cut(s) 37, 46, 185, 188
MaeI CTAG 2 cut(s) 386, 451
MaeIII GTNAC 1 cut(s) 304
MalI GATC 2 cut(s) 74, 257
MboI GATC 2 cut(s) 72, 255
MboII GAAGA 2 cut(s) 203, 250
MfeI CAATTG 2 cut(s) 153, 265
MhlI GDGCHC 1 cut(s) 319
MluCI AATT 2 cut(s) 153, 265
MnlI CCTC 4 cut(s) 200, 255, 356, 387
MseI TTAA 2 cut(s) 164, 414
MslI CAYNNNNRTG 1 cut(s) 84
MspR9I CCNGG 1 cut(s) 238
MunI CAATTG 2 cut(s) 153, 265
MvaI CCWGG 1 cut(s) 238
MwoI GCNNNNNNNGC 4 cut(s) 56, 59, 215, 224
NdeII GATC 2 cut(s) 72, 255
NlaIII CATG 2 cut(s) 43, 95
NlaIV GGNNCC 3 cut(s) 242, 243, 442
PciSI GCTCTTC 1 cut(s) 216
PkrI GCNGC 4 cut(s) 52, 61, 175, 178
PpuMI RGGWCCY 1 cut(s) 241
Psp5II RGGWCCY 1 cut(s) 241
Psp6I CCWGG 1 cut(s) 236
PspGI CCWGG 1 cut(s) 236
PspN4I GGNNCC 3 cut(s) 242, 243, 442
PspPI GGNCC 2 cut(s) 241, 440
PspPPI RGGWCCY 1 cut(s) 241
PsrI GAACNNNNNNTAC 2 cut(s) 335, 367
RseI CAYNNNNRTG 1 cut(s) 84
SapI GCTCTTC 1 cut(s) 216
SaqAI TTAA 2 cut(s) 164, 414
SatI GCNGC 4 cut(s) 51, 60, 174, 177
Sau3AI GATC 2 cut(s) 72, 255
Sau96I GGNCC 2 cut(s) 241, 440
ScrFI CCNGG 1 cut(s) 238
SduI GDGCHC 1 cut(s) 319
SetI ASST 8 cut(s) 192, 311, 327, 334, 348, 357, 387, 396
SfcI CTRYAG 1 cut(s) 333
SinI GGWCC 2 cut(s) 241, 440
SmiMI CAYNNNNRTG 1 cut(s) 84
SmlI CTYRAG 1 cut(s) 418
SmoI CTYRAG 1 cut(s) 418
Sse9I AATT 2 cut(s) 153, 265
SspMI CTAG 2 cut(s) 386, 451
StyD4I CCNGG 1 cut(s) 236
StyI CCWWGG 2 cut(s) 355, 364
TaaI ACNGT 2 cut(s) 431, 440
TasI AATT 2 cut(s) 153, 265
Tru1I TTAA 2 cut(s) 164, 414
Tru9I TTAA 2 cut(s) 164, 414
TseI GCWGC 4 cut(s) 50, 59, 173, 176
TspDTI ATGAA 1 cut(s) 80
VneI GTGCAC 1 cut(s) 315
VpaK11BI GGWCC 2 cut(s) 241, 440
XspI CTAG 2 cut(s) 386, 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.