RchiOBHm_Chr2g0113771

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000229
Physical Location & Seq
Reverse (-)
25897110 .. 25900881
3772 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48708

Sequence Viewer

Length: 1107 bp
ATGATCTGTTGCCAATGCTACAATGCTTTATCAAGCTCTGTTATTGAGGAGTTGCCTAGTTCAATTCGCAACTTGAAACATCTAAGGCACTTGGACTTGTCATCTAATGCTCAAATCAAAATGTTACCAGATGCAGTAGTTACTTGGTTCTTCCGGATATACTTGATCTGTTGTGAGGTGGCTAGCTGCGTAACTATGGCAGCACAAACCAACCTTAACATCACCACAGACCAGTTTGCTCTTCTTGCTCTCAAAGCCCGTATCACCAATGACCCTCAAAACATAGTCTTCACCAACTGGTCAACCACAACCCCTGTTTGTAACTGGGTTGGAGTCACTTGTGGTGCACGCCATCATCGAATCGCAGAGTTGAACGTATCTTACTTTGGTCTCACAGGCACCATTCCTCCAGAGCTAGGCAACTTATCTTTTCTTGTTGTTCTGGACTTCAAAAATAATAGTTTTCACGGTATCTTGCCTCAAGAATTGGCTTGCCTGCGTCGGTTGAAGTTTATAAGATTGGGAAACAACAAGTTCATGGGAGTCATTCCATCATGGTTTGGCTCCTTATTCAAACTTCAAGTATTCGATTTGTCTGGTAATCAATTTTCAGGTTCCATACCAGCTACAATCTTCAACTTATCTGCTCTGCAAAGAATTAATCTTAGTTATAACCAACTCTCAGGTAGAATATCCAGAGAAATGGGGAACCTAACAATGTTGAAGGAGATCTACCTTGATAGTAATAATTTTGAAGTTGGAATGTGTGTTGATTTTTCAGAAATTCCAAATGAGATCGGCACTTTGAATCATCTGGAAAAATTGTCTGTGCAACAGAATTCCTTAAAAGGGCCCATCCCTATGACTATCTTCAACATGTCATCTTTGACTATTGTAACTTTCTATGGTAATAATTTGAATGGTAGAATTCCGGACAATATTTGTCAAAATCTTTCAAATATTCAATGGTTGAATTTGGGTGCCAATCAATTTAATGGTCCACTTCCTTCCATATTTGGGCAATGCAAACAACTTCTTCGATTAGACTTGGGGGCTAATAGCTTGACAGGTATTCATAATATCAATTGCATATATTTAATCACTTAA

Protein Analysis

368

Amino Acids

41.07

Weight (kDa)

8.21

Isoelectric Point (pI)

30.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 76 - 114 8.5e-10 Leucine rich repeat N-terminal domain
LRR_14 PF23598 132 - 246 9.2e-10 Leucine-rich repeat region
LRR_8 PF13855 174 - 227 3.8e-08 Leucine rich repeat
LRR_8 PF13855 193 - 251 2e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 515, 672
AccB1I GGYRCC 2 cut(s) 398, 980
AccIII TCCGGA 2 cut(s) 153, 931
AcsI RAATTY 4 cut(s) 783, 838, 927, 973
AfiI CCNNNNNNNGG 3 cut(s) 416, 849, 1017
AflIII ACRYGT 1 cut(s) 876
AluBI AGCT 5 cut(s) 36, 186, 415, 626, 1062
AluI AGCT 5 cut(s) 36, 186, 415, 626, 1062
Alw21I GWGCWC 1 cut(s) 349
Alw26I GTCTC 1 cut(s) 395
Alw44I GTGCAC 1 cut(s) 345
Aor13HI TCCGGA 2 cut(s) 153, 931
AoxI GGCC 1 cut(s) 851
ApaI GGGCCC 1 cut(s) 855
ApaLI GTGCAC 1 cut(s) 345
ApeKI GCWGC 2 cut(s) 186, 200
ApoI RAATTY 4 cut(s) 783, 838, 927, 973
AseI ATTAAT 1 cut(s) 660
AspS9I GGNCC 3 cut(s) 851, 852, 998
AsuHPI GGTGA 3 cut(s) 214, 256, 283
AsuNHI GCTAGC 1 cut(s) 182
AvaII GGWCC 1 cut(s) 998
BaeGI GKGCMC 2 cut(s) 349, 855
BanI GGYRCC 2 cut(s) 398, 980
BanII GRGCYC 1 cut(s) 855
BarI GAAGNNNNNNTAC 2 cut(s) 716, 748
BbsI GAAGAC 1 cut(s) 280
Bbv12I GWGCWC 1 cut(s) 349
BbvI GCAGC 2 cut(s) 173, 212
BccI CCATC 3 cut(s) 360, 559, 863
BcoDI GTCTC 1 cut(s) 395
BfaI CTAG 3 cut(s) 57, 183, 416
BglII AGATCT 1 cut(s) 729
BisI GCNGC 2 cut(s) 187, 201
BlsI GCNGC 2 cut(s) 188, 202
Bme18I GGWCC 1 cut(s) 998
BmgT120I GGNCC 3 cut(s) 851, 852, 998
BmiI GGNNCC 6 cut(s) 400, 565, 616, 710, 853, 982
BmrI ACTGGG 1 cut(s) 334
BmsI GCATC 1 cut(s) 121
BmtI GCTAGC 1 cut(s) 186
BmuI ACTGGG 1 cut(s) 334
BpiI GAAGAC 1 cut(s) 280
BpmI CTGGAG 1 cut(s) 393
BpuEI CTTGAG 1 cut(s) 465
BsaI GGTCTC 1 cut(s) 395
BsaWI WCCGGW 2 cut(s) 153, 931
BsaXI ACNNNNNCTCC 2 cut(s) 391, 421
Bsc4I CCNNNNNNNGG 3 cut(s) 416, 849, 1017
Bse1I ACTGG 3 cut(s) 232, 302, 329
Bse3DI GCAATG 1 cut(s) 1028
BseAI TCCGGA 2 cut(s) 153, 931
BseGI GGATG 1 cut(s) 855
BseLI CCNNNNNNNGG 3 cut(s) 416, 849, 1017
BseMI GCAATG 1 cut(s) 1028
BseMII CTCAG 1 cut(s) 696
BseNI ACTGG 3 cut(s) 232, 302, 329
BseRI GAGGAG 1 cut(s) 62
BseSI GKGCMC 2 cut(s) 349, 855
BseXI GCAGC 2 cut(s) 173, 212
BshFI GGCC 1 cut(s) 853
BshNI GGYRCC 2 cut(s) 398, 980
BsiHKAI GWGCWC 1 cut(s) 349
BsiSI CCGG 2 cut(s) 154, 932
BslI CCNNNNNNNGG 3 cut(s) 416, 849, 1017
BsmAI GTCTC 1 cut(s) 395
BsnI GGCC 1 cut(s) 853
Bso31I GGTCTC 1 cut(s) 395
Bsp120I GGGCCC 1 cut(s) 851
Bsp1286I GDGCHC 2 cut(s) 349, 855
Bsp13I TCCGGA 2 cut(s) 153, 931
Bsp143I GATC 4 cut(s) 3, 165, 729, 795
BspANI GGCC 1 cut(s) 853
BspCNI CTCAG 1 cut(s) 695
BspEI TCCGGA 2 cut(s) 153, 931
BspLI GGNNCC 6 cut(s) 400, 565, 616, 710, 853, 982
BspOI GCTAGC 1 cut(s) 186
BspQI GCTCTTC 1 cut(s) 246
BspT107I GGYRCC 2 cut(s) 398, 980
BspTNI GGTCTC 1 cut(s) 395
BsrDI GCAATG 1 cut(s) 1028
BsrI ACTGG 3 cut(s) 232, 302, 329
BssMI GATC 4 cut(s) 3, 165, 729, 795
Bst4CI ACNGT 1 cut(s) 470
Bst6I CTCTTC 1 cut(s) 246
BstC8I GCNNGC 4 cut(s) 184, 349, 493, 497
BstDEI CTNAG 3 cut(s) 83, 665, 682
BstF5I GGATG 1 cut(s) 855
BstKTI GATC 4 cut(s) 6, 168, 732, 798
BstMAI GTCTC 1 cut(s) 395
BstMBI GATC 4 cut(s) 3, 165, 729, 795
BstMWI GCNNNNNNNGC 2 cut(s) 245, 254
BstNSI RCATGY 1 cut(s) 880
BstSLI GKGCMC 2 cut(s) 349, 855
BstV1I GCAGC 2 cut(s) 173, 212
BstV2I GAAGAC 1 cut(s) 280
BstX2I RGATCY 1 cut(s) 729
BstXI CCANNNNNNTGG 1 cut(s) 703
BstYI RGATCY 1 cut(s) 729
BsuRI GGCC 1 cut(s) 853
BtsCI GGATG 1 cut(s) 855
Cac8I GCNNGC 4 cut(s) 184, 349, 493, 497
Cfr13I GGNCC 3 cut(s) 851, 852, 998
CseI GACGC 1 cut(s) 488
CviAII CATG 3 cut(s) 538, 555, 877
DdeI CTNAG 3 cut(s) 83, 665, 682
DpnI GATC 4 cut(s) 5, 167, 731, 797
DpnII GATC 4 cut(s) 3, 165, 729, 795
Eam1104I CTCTTC 1 cut(s) 246
EarI CTCTTC 1 cut(s) 246
Eco24I GRGCYC 1 cut(s) 855
Eco31I GGTCTC 1 cut(s) 395
Eco47I GGWCC 1 cut(s) 998
EcoO109I RGGNCCY 1 cut(s) 851
EcoRI GAATTC 2 cut(s) 838, 927
EcoT38I GRGCYC 1 cut(s) 855
FaeI CATG 3 cut(s) 541, 558, 880
FatI CATG 3 cut(s) 537, 554, 876
Fnu4HI GCNGC 2 cut(s) 187, 201
FokI GGATG 1 cut(s) 842
FriOI GRGCYC 1 cut(s) 855
Fsp4HI GCNGC 2 cut(s) 187, 201
FspBI CTAG 3 cut(s) 57, 183, 416
GluI GCNGC 2 cut(s) 187, 201
GsuI CTGGAG 1 cut(s) 393
HaeIII GGCC 1 cut(s) 853
HapII CCGG 2 cut(s) 154, 932
HgaI GACGC 1 cut(s) 488
Hin1II CATG 3 cut(s) 541, 558, 880
HincII GTYRAC 1 cut(s) 303
HindII GTYRAC 1 cut(s) 303
HinfI GANTC 4 cut(s) 333, 360, 543, 808
HpaII CCGG 2 cut(s) 154, 932
HphI GGTGA 3 cut(s) 214, 256, 283
Hpy166II GTNNAC 3 cut(s) 303, 347, 1001
Hpy188I TCNGA 1 cut(s) 781
Hpy188III TCNNGA 7 cut(s) 154, 410, 443, 482, 696, 815, 932
Hpy8I GTNNAC 3 cut(s) 303, 347, 1001
Hpy99I CGWCG 1 cut(s) 504
HpyAV CCTTC 2 cut(s) 718, 1017
HpyCH4III ACNGT 1 cut(s) 470
HpyCH4IV ACGT 1 cut(s) 375
HpyCH4V TGCA 6 cut(s) 134, 347, 652, 832, 1026, 1089
HpyF10VI GCNNNNNNNGC 2 cut(s) 245, 254
HpyF3I CTNAG 3 cut(s) 83, 665, 682
HpySE526I ACGT 1 cut(s) 375
Hsp92II CATG 3 cut(s) 541, 558, 880
Kpn2I TCCGGA 2 cut(s) 153, 931
Kzo9I GATC 4 cut(s) 3, 165, 729, 795
LguI GCTCTTC 1 cut(s) 246
LmnI GCTCC 1 cut(s) 569
Lsp1109I GCAGC 2 cut(s) 173, 212
LweI GCATC 1 cut(s) 121
MaeI CTAG 3 cut(s) 57, 183, 416
MaeII ACGT 1 cut(s) 375
MaeIII GTNAC 6 cut(s) 123, 139, 190, 320, 334, 895
MalI GATC 4 cut(s) 5, 167, 731, 797
MboI GATC 4 cut(s) 3, 165, 729, 795
MboII GAAGA 6 cut(s) 142, 233, 280, 625, 862, 1028
MfeI CAATTG 1 cut(s) 1084
MflI RGATCY 1 cut(s) 729
MhlI GDGCHC 2 cut(s) 349, 855
MlyI GAGTC 2 cut(s) 342, 552
MmeI TCCRAC 2 cut(s) 310, 739
MnlI CCTC 5 cut(s) 40, 169, 285, 417, 489
MroI TCCGGA 2 cut(s) 153, 931
MseI TTAA 6 cut(s) 216, 660, 845, 993, 1097, 1105
MslI CAYNNNNRTG 1 cut(s) 860
MspI CCGG 2 cut(s) 154, 932
MunI CAATTG 1 cut(s) 1084
MwoI GCNNNNNNNGC 2 cut(s) 245, 254
NdeII GATC 4 cut(s) 3, 165, 729, 795
NheI GCTAGC 1 cut(s) 182
NlaIII CATG 3 cut(s) 541, 558, 880
NlaIV GGNNCC 6 cut(s) 400, 565, 616, 710, 853, 982
NmuCI GTSAC 1 cut(s) 334
NspI RCATGY 1 cut(s) 880
PciI ACATGT 1 cut(s) 876
PciSI GCTCTTC 1 cut(s) 246
PcsI WCGNNNNNNNCGW 1 cut(s) 355
PfeI GAWTC 2 cut(s) 360, 808
PkrI GCNGC 2 cut(s) 188, 202
PleI GAGTC 2 cut(s) 341, 551
PpsI GAGTC 2 cut(s) 341, 551
PscI ACATGT 1 cut(s) 876
PshBI ATTAAT 1 cut(s) 660
PsiI TTATAA 2 cut(s) 515, 672
PspN4I GGNNCC 6 cut(s) 400, 565, 616, 710, 853, 982
PspOMI GGGCCC 1 cut(s) 851
PspPI GGNCC 3 cut(s) 851, 852, 998
PsrI GAACNNNNNNTAC 2 cut(s) 365, 397
PsuI RGATCY 1 cut(s) 729
RseI CAYNNNNRTG 1 cut(s) 860
SapI GCTCTTC 1 cut(s) 246
SaqAI TTAA 6 cut(s) 216, 660, 845, 993, 1097, 1105
SatI GCNGC 2 cut(s) 187, 201
Sau3AI GATC 4 cut(s) 3, 165, 729, 795
Sau96I GGNCC 3 cut(s) 851, 852, 998
SchI GAGTC 2 cut(s) 342, 552
SduI GDGCHC 2 cut(s) 349, 855
SfaNI GCATC 1 cut(s) 121
SinI GGWCC 1 cut(s) 998
SmiMI CAYNNNNRTG 1 cut(s) 860
SmlI CTYRAG 1 cut(s) 480
SmoI CTYRAG 1 cut(s) 480
SspI AATATT 2 cut(s) 940, 961
SspMI CTAG 3 cut(s) 57, 183, 416
TaaI ACNGT 1 cut(s) 470
TaiI ACGT 1 cut(s) 378
TaqI TCGA 3 cut(s) 358, 588, 1039
TfiI GAWTC 2 cut(s) 360, 808
Tru1I TTAA 6 cut(s) 216, 660, 845, 993, 1097, 1105
Tru9I TTAA 6 cut(s) 216, 660, 845, 993, 1097, 1105
TseFI GTSAC 1 cut(s) 334
TseI GCWGC 2 cut(s) 186, 200
Tsp45I GTSAC 1 cut(s) 334
TspDTI ATGAA 2 cut(s) 526, 1064
VneI GTGCAC 1 cut(s) 345
VpaK11BI GGWCC 1 cut(s) 998
VspI ATTAAT 1 cut(s) 660
XapI RAATTY 4 cut(s) 783, 838, 927, 973
XceI RCATGY 1 cut(s) 880
XspI CTAG 3 cut(s) 57, 183, 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.