RchiOBHm_Chr5g0040471

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000229
Physical Location & Seq
Forward (+)
35179416 .. 35181442
2027 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31897

Sequence Viewer

Length: 1029 bp
ATGCAAGCAATGTTGAGAAATCGGATCCTATTGTCGATAGTGTTGTTGCTGATACAATACTGGTCCACGGCAGCACAAACAAGCATCAGCACAGACCATTCTGCTCTTCTTGCTCTCAAATCTCATATCACCAATGACCCTCAAAACATGATCTTGACCAAGTGGTCAACCCCCAGCTCCATTTGCAACTGGATTGGAGTTACTTGTGGTGCACGGCATCTTCGAGTTACTGCCTTGAATCTCTCTTACATGGATGTCACAGGCACCATTCCTCCGGAGCTAGGCAACCTATCATTTCTTGTTGAGCTGCACTTCAGAAATAACAGTTTCCATGGTACCATTCCCCAAGAATTGTCTCGTTTGCGCCGCCTGAAGATTCTTAATTTCGGATTCAACAACTTCAAAGGAACCATTCCCTCATGGTTAGGTGCCGTATCCAAACTTCAAATCGTCAGTTTGTATGGTAATCAATTTTCAGGTTTAATACCTACCAACATCTTCAACTTATCTGCAATGCAACAAATTGATCTTAGGTTCAATGATCTATCAGGTAGCATACCAAGAGAAATTGGAAACTTAACAATGCTGAAGTCGATTGGCCTTGACTCTAATAATCTCAAAGAATTTCCAAATGAAATTGGCACATTAGATCAGCTGGAAGAGATAAGTGTACAAGACAATGCCCTAGAAGGGCATCTTCCTGGGGCTATCTTCAACATGTCTTCTTTGACTGCATTGGCTCTGACAGGAAACAGCTTGAATGGCAGACTTCCAGACAATATATGTCAGCATCTTCCTAGTATTCAAAAGTTGTATTTGTCACACAACCAGTTTGTCGGTCCTCTTCCATCCAAATTATGGCAATGCAAAGAGCTTGCTGCATTATCATGGGGGTATAATAATTTCAGTGGAAGCATACCCAAAAATATAGGGAATTTGACCCAGATAAAGTATATTCATCTCGGCTACAACAATTTGACAGGTACTATACCAAATGAGATTGGTGATCTTCCAAAATTGGAGTTTTGA

Protein Analysis

342

Amino Acids

37.93

Weight (kDa)

8.31

Isoelectric Point (pI)

25.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 30 - 69 5.6e-10 Leucine rich repeat N-terminal domain
LRR_14 PF23598 73 - 181 2e-06 Leucine-rich repeat region
LRR_8 PF13855 147 - 206 9.6e-06 Leucine rich repeat
LRR_14 PF23598 188 - 275 4.3e-09 Leucine-rich repeat region
LRR_8 PF13855 218 - 278 4.5e-09 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 163
Acc65I GGTACC 1 cut(s) 335
AccB1I GGYRCC 3 cut(s) 263, 335, 428
AccB7I CCANNNNNTGG 1 cut(s) 858
AccIII TCCGGA 1 cut(s) 274
AciI CCGC 1 cut(s) 367
AclWI GGATC 2 cut(s) 19, 32
AcsI RAATTY 2 cut(s) 623, 934
AcuI CTGAAG 3 cut(s) 298, 392, 608
AfaI GTAC 3 cut(s) 337, 672, 985
AfiI CCNNNNNNNGG 3 cut(s) 281, 690, 858
AflIII ACRYGT 1 cut(s) 717
AgsI TTSAA 9 cut(s) 238, 394, 403, 446, 502, 538, 715, 760, 806
AjnI CCWGG 1 cut(s) 700
AluBI AGCT 6 cut(s) 177, 280, 307, 655, 756, 874
AluI AGCT 6 cut(s) 177, 280, 307, 655, 756, 874
Alw21I GWGCWC 1 cut(s) 214
Alw26I GTCTC 1 cut(s) 360
Alw44I GTGCAC 1 cut(s) 210
AlwI GGATC 2 cut(s) 19, 32
Aor13HI TCCGGA 1 cut(s) 274
AoxI GGCC 1 cut(s) 598
ApaLI GTGCAC 1 cut(s) 210
ApeKI GCWGC 3 cut(s) 71, 307, 878
ApoI RAATTY 2 cut(s) 623, 934
Asp718I GGTACC 1 cut(s) 335
AspLEI GCGC 1 cut(s) 366
AspS9I GGNCC 2 cut(s) 63, 839
AsuHPI GGTGA 2 cut(s) 121, 1016
AvaII GGWCC 2 cut(s) 63, 839
BaeGI GKGCMC 1 cut(s) 214
BamHI GGATCC 1 cut(s) 24
BanI GGYRCC 3 cut(s) 263, 335, 428
BarI GAAGNNNNNNTAC 2 cut(s) 426, 458
BbsI GAAGAC 1 cut(s) 714
Bbv12I GWGCWC 1 cut(s) 214
BbvI GCAGC 3 cut(s) 83, 294, 865
BccI CCATC 1 cut(s) 856
BceAI ACGGC 3 cut(s) 84, 230, 416
BciT130I CCWGG 1 cut(s) 702
BciVI GTATCC 1 cut(s) 445
BcoDI GTCTC 1 cut(s) 360
BfaI CTAG 3 cut(s) 281, 686, 798
BfuI GTATCC 1 cut(s) 445
BisI GCNGC 4 cut(s) 72, 308, 367, 879
BlsI GCNGC 4 cut(s) 73, 309, 368, 880
Bme1390I CCNGG 1 cut(s) 702
Bme18I GGWCC 2 cut(s) 63, 839
BmgT120I GGNCC 2 cut(s) 63, 839
BmiI GGNNCC 5 cut(s) 26, 265, 337, 409, 430
BmrFI CCNGG 1 cut(s) 702
BmsI GCATC 4 cut(s) 93, 226, 703, 799
BpiI GAAGAC 1 cut(s) 714
BsaJI CCNNGG 3 cut(s) 66, 331, 701
BsaWI WCCGGW 1 cut(s) 274
BsaXI ACNNNNNCTCC 2 cut(s) 256, 286
Bsc4I CCNNNNNNNGG 3 cut(s) 281, 690, 858
Bse1I ACTGG 3 cut(s) 65, 194, 829
Bse3DI GCAATG 3 cut(s) 15, 519, 869
BseAI TCCGGA 1 cut(s) 274
BseBI CCWGG 1 cut(s) 702
BseDI CCNNGG 3 cut(s) 66, 331, 701
BseGI GGATG 2 cut(s) 259, 848
BseLI CCNNNNNNNGG 3 cut(s) 281, 690, 858
BseMI GCAATG 3 cut(s) 15, 519, 869
BseNI ACTGG 3 cut(s) 65, 194, 829
BseSI GKGCMC 1 cut(s) 214
BseXI GCAGC 3 cut(s) 83, 294, 865
BseYI CCCAGC 1 cut(s) 173
BsgI GTGCAG 1 cut(s) 293
BshFI GGCC 1 cut(s) 600
BshNI GGYRCC 3 cut(s) 263, 335, 428
BsiHKAI GWGCWC 1 cut(s) 214
BsiSI CCGG 1 cut(s) 275
BslI CCNNNNNNNGG 3 cut(s) 281, 690, 858
BsmAI GTCTC 1 cut(s) 360
BsnI GGCC 1 cut(s) 600
Bsp1286I GDGCHC 1 cut(s) 214
Bsp13I TCCGGA 1 cut(s) 274
Bsp1407I TGTACA 1 cut(s) 670
Bsp143I GATC 6 cut(s) 24, 150, 526, 541, 649, 1006
Bsp19I CCATGG 1 cut(s) 331
BspACI CCGC 1 cut(s) 367
BspANI GGCC 1 cut(s) 600
BspEI TCCGGA 1 cut(s) 274
BspLI GGNNCC 5 cut(s) 26, 265, 337, 409, 430
BspPI GGATC 2 cut(s) 19, 32
BspQI GCTCTTC 1 cut(s) 111
BspT107I GGYRCC 3 cut(s) 263, 335, 428
BsrDI GCAATG 3 cut(s) 15, 519, 869
BsrGI TGTACA 1 cut(s) 670
BsrI ACTGG 3 cut(s) 65, 194, 829
BssECI CCNNGG 3 cut(s) 66, 331, 701
BssMI GATC 6 cut(s) 24, 150, 526, 541, 649, 1006
BssT1I CCWWGG 1 cut(s) 331
Bst2UI CCWGG 1 cut(s) 702
Bst4CI ACNGT 1 cut(s) 326
Bst6I CTCTTC 3 cut(s) 111, 654, 849
BstAUI TGTACA 1 cut(s) 670
BstC8I GCNNGC 2 cut(s) 6, 876
BstDEI CTNAG 1 cut(s) 530
BstDSI CCRYGG 2 cut(s) 66, 331
BstF5I GGATG 2 cut(s) 259, 848
BstHHI GCGC 1 cut(s) 366
BstKTI GATC 6 cut(s) 27, 153, 529, 544, 652, 1009
BstMAI GTCTC 1 cut(s) 360
BstMBI GATC 6 cut(s) 24, 150, 526, 541, 649, 1006
BstMWI GCNNNNNNNGC 3 cut(s) 110, 183, 762
BstNI CCWGG 1 cut(s) 702
BstNSI RCATGY 1 cut(s) 721
BstSCI CCNGG 1 cut(s) 700
BstSLI GKGCMC 1 cut(s) 214
BstV1I GCAGC 3 cut(s) 83, 294, 865
BstV2I GAAGAC 1 cut(s) 714
BstX2I RGATCY 1 cut(s) 24
BstYI RGATCY 1 cut(s) 24
BsuI GTATCC 1 cut(s) 445
BsuRI GGCC 1 cut(s) 600
BtgI CCRYGG 2 cut(s) 66, 331
BtsCI GGATG 2 cut(s) 259, 848
BtsIMutI CAGTG 1 cut(s) 913
Cac8I GCNNGC 2 cut(s) 6, 876
CfoI GCGC 1 cut(s) 366
Cfr13I GGNCC 2 cut(s) 63, 839
Csp6I GTAC 3 cut(s) 336, 671, 984
CviAII CATG 6 cut(s) 148, 250, 332, 420, 718, 888
CviQI GTAC 3 cut(s) 336, 671, 984
DdeI CTNAG 1 cut(s) 530
DpnI GATC 6 cut(s) 26, 152, 528, 543, 651, 1008
DpnII GATC 6 cut(s) 24, 150, 526, 541, 649, 1006
DrdI GACNNNNNNGTC 1 cut(s) 163
DseDI GACNNNNNNGTC 1 cut(s) 163
Eam1104I CTCTTC 3 cut(s) 111, 654, 849
EarI CTCTTC 3 cut(s) 111, 654, 849
Eco130I CCWWGG 1 cut(s) 331
Eco47I GGWCC 2 cut(s) 63, 839
Eco57I CTGAAG 3 cut(s) 298, 392, 608
EcoRII CCWGG 1 cut(s) 700
EcoT14I CCWWGG 1 cut(s) 331
ErhI CCWWGG 1 cut(s) 331
FaeI CATG 6 cut(s) 151, 253, 335, 423, 721, 891
FalI AAGNNNNNCTT 2 cut(s) 681, 713
FatI CATG 6 cut(s) 147, 249, 331, 419, 717, 887
Fnu4HI GCNGC 4 cut(s) 72, 308, 367, 879
FokI GGATG 2 cut(s) 266, 835
Fsp4HI GCNGC 4 cut(s) 72, 308, 367, 879
FspBI CTAG 3 cut(s) 281, 686, 798
GlaI GCGC 1 cut(s) 365
GluI GCNGC 4 cut(s) 72, 308, 367, 879
GsaI CCCAGC 1 cut(s) 177
HaeIII GGCC 1 cut(s) 600
HapII CCGG 1 cut(s) 275
HhaI GCGC 1 cut(s) 366
Hin1II CATG 6 cut(s) 151, 253, 335, 423, 721, 891
Hin6I GCGC 1 cut(s) 364
HinP1I GCGC 1 cut(s) 364
HincII GTYRAC 1 cut(s) 168
HindII GTYRAC 1 cut(s) 168
HinfI GANTC 4 cut(s) 238, 376, 390, 605
HpaII CCGG 1 cut(s) 275
HphI GGTGA 2 cut(s) 121, 1016
Hpy166II GTNNAC 4 cut(s) 66, 168, 212, 671
Hpy188I TCNGA 4 cut(s) 24, 317, 389, 744
Hpy188III TCNNGA 3 cut(s) 154, 275, 773
Hpy8I GTNNAC 4 cut(s) 66, 168, 212, 671
HpyAV CCTTC 1 cut(s) 683
HpyCH4III ACNGT 1 cut(s) 326
HpyCH4V TGCA 9 cut(s) 4, 186, 212, 310, 512, 517, 734, 867, 881
HpyF10VI GCNNNNNNNGC 3 cut(s) 110, 183, 762
HpyF3I CTNAG 1 cut(s) 530
Hsp92II CATG 6 cut(s) 151, 253, 335, 423, 721, 891
HspAI GCGC 1 cut(s) 364
Kpn2I TCCGGA 1 cut(s) 274
KpnI GGTACC 1 cut(s) 339
Kzo9I GATC 6 cut(s) 24, 150, 526, 541, 649, 1006
LguI GCTCTTC 1 cut(s) 111
LmnI GCTCC 2 cut(s) 182, 277
Lsp1109I GCAGC 3 cut(s) 83, 294, 865
LweI GCATC 4 cut(s) 93, 226, 703, 799
MaeI CTAG 3 cut(s) 281, 686, 798
MaeIII GTNAC 4 cut(s) 199, 226, 256, 819
MalI GATC 6 cut(s) 26, 152, 528, 543, 651, 1008
MboI GATC 6 cut(s) 24, 150, 526, 541, 649, 1006
MflI RGATCY 1 cut(s) 24
MhlI GDGCHC 1 cut(s) 214
MlyI GAGTC 1 cut(s) 599
MnlI CCTC 4 cut(s) 150, 282, 427, 852
MroI TCCGGA 1 cut(s) 274
MseI TTAA 3 cut(s) 381, 482, 578
MslI CAYNNNNRTG 1 cut(s) 886
MspA1I CMGCKG 1 cut(s) 655
MspI CCGG 1 cut(s) 275
MspR9I CCNGG 1 cut(s) 702
MvaI CCWGG 1 cut(s) 702
MwoI GCNNNNNNNGC 3 cut(s) 110, 183, 762
NcoI CCATGG 1 cut(s) 331
NdeII GATC 6 cut(s) 24, 150, 526, 541, 649, 1006
NlaIII CATG 6 cut(s) 151, 253, 335, 423, 721, 891
NlaIV GGNNCC 5 cut(s) 26, 265, 337, 409, 430
NmeAIII GCCGAG 1 cut(s) 942
NmuCI GTSAC 2 cut(s) 256, 819
NspI RCATGY 1 cut(s) 721
PciI ACATGT 1 cut(s) 717
PciSI GCTCTTC 1 cut(s) 111
PcsI WCGNNNNNNNCGW 1 cut(s) 220
PfeI GAWTC 3 cut(s) 238, 376, 390
PflMI CCANNNNNTGG 1 cut(s) 858
PkrI GCNGC 4 cut(s) 73, 309, 368, 880
PleI GAGTC 1 cut(s) 599
PpsI GAGTC 1 cut(s) 599
PscI ACATGT 1 cut(s) 717
Psp6I CCWGG 1 cut(s) 700
PspFI CCCAGC 1 cut(s) 173
PspGI CCWGG 1 cut(s) 700
PspN4I GGNNCC 5 cut(s) 26, 265, 337, 409, 430
PspPI GGNCC 2 cut(s) 63, 839
PsuI RGATCY 1 cut(s) 24
PvuII CAGCTG 1 cut(s) 655
RsaI GTAC 3 cut(s) 337, 672, 985
RsaNI GTAC 3 cut(s) 336, 671, 984
RseI CAYNNNNRTG 1 cut(s) 886
SapI GCTCTTC 1 cut(s) 111
SaqAI TTAA 3 cut(s) 381, 482, 578
SatI GCNGC 4 cut(s) 72, 308, 367, 879
Sau3AI GATC 6 cut(s) 24, 150, 526, 541, 649, 1006
Sau96I GGNCC 2 cut(s) 63, 839
SchI GAGTC 1 cut(s) 599
ScrFI CCNGG 1 cut(s) 702
SduI GDGCHC 1 cut(s) 214
SfaNI GCATC 4 cut(s) 93, 226, 703, 799
SinI GGWCC 2 cut(s) 63, 839
SmiMI CAYNNNNRTG 1 cut(s) 886
SsiI CCGC 1 cut(s) 367
SspMI CTAG 3 cut(s) 281, 686, 798
StyD4I CCNGG 1 cut(s) 700
StyI CCWWGG 1 cut(s) 331
TaaI ACNGT 1 cut(s) 326
TaqI TCGA 3 cut(s) 35, 223, 593
TaqII GACCGA 1 cut(s) 827
TatI WGTACW 1 cut(s) 670
TauI GCSGC 1 cut(s) 369
TfiI GAWTC 3 cut(s) 238, 376, 390
Tru1I TTAA 3 cut(s) 381, 482, 578
Tru9I TTAA 3 cut(s) 381, 482, 578
TscAI CASTG 1 cut(s) 913
TseFI GTSAC 2 cut(s) 256, 819
TseI GCWGC 3 cut(s) 71, 307, 878
Tsp45I GTSAC 2 cut(s) 256, 819
TspDTI ATGAA 2 cut(s) 648, 947
TspRI CASTG 1 cut(s) 913
Van91I CCANNNNNTGG 1 cut(s) 858
VneI GTGCAC 1 cut(s) 210
VpaK11BI GGWCC 2 cut(s) 63, 839
XapI RAATTY 2 cut(s) 623, 934
XceI RCATGY 1 cut(s) 721
XcmI CCANNNNNNNNNTGG 1 cut(s) 855
XspI CTAG 3 cut(s) 281, 686, 798
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.