Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00653

Orthogroup ID

OG0000229

Physical Location & Seq

Genomic Coordinates Reverse (-)

35317 .. 35883

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G014660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCCAGAGTTACTTGGTTCTTCCTGATATACTTGATCTGTTGTGAGGCGGCTAGCTGCTTAACTATGGTAGCACAAACCAACATTAACATCACCACAGACCGGTCTGCTCTTCTTGCTCTCAAAGACCGTATCACCAATGACCCTCGAAACATAGTCTTCACTAACTGGTCAACCACAACCCCTGTTTGTAACTGGGTTGGAGTCACTTGTGGTGCACGCCATCATCGAATCGCAGAGCTGAACGTATCTTACTTTGGTCTCATAGGCACCATTCCTCCAGAGCTAGGCAACTTATCTTTTCTTGTTGATCTGGATTTCGAAAATAATAGTTTTCACGGTACCTTGCCTCAAGAATTGGCTCGCCTGCATCGGTTGAAGTTTATTAACTTAGGATACAACAAGTTTATTGGAGTGATTCCGTCATGGTTTGGGTCCTTGTCCAAACTTCAAGAATTCAATTTTCATGGTAATCAATTTTTTGGTTCCATCCCAGCTATAATATTCAACTTATCTGCTCTGCAAATAATTGATCTGGGTTATAACCAACTCTCAGGTATGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04016 ko04064 ko04620 ko04621 ko04624 ko04626 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04016 map04064 map04620 map04621 map04624 map04626 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

188

Amino Acids

21.14

Weight (kDa)

6.94

Isoelectric Point (pI)

21.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	33 - 71	3.5e-11	Leucine rich repeat N-terminal domain
LRR_14	PF23598	88 - 155	2.4e-06	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000229)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica	MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica	Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis	pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis	RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata	RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora	Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii	Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa	Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha	Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana	Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	543
Acc65I	GGTACC	1 cut(s)	341
AccB1I	GGYRCC	2 cut(s)	269, 341
AciI	CCGC	1 cut(s)	50
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	455
AfaI	GTAC	1 cut(s)	343
AfiI	CCNNNNNNNGG	2 cut(s)	102, 287
AgeI	ACCGGT	1 cut(s)	102
AgsI	TTSAA	4 cut(s)	379, 452, 460, 508
AluBI	AGCT	4 cut(s)	57, 241, 286, 497
AluI	AGCT	4 cut(s)	57, 241, 286, 497
Alw21I	GWGCWC	1 cut(s)	220
Alw26I	GTCTC	1 cut(s)	266
Alw44I	GTGCAC	1 cut(s)	216
AoxI	GGCC	1 cut(s)	3
ApaLI	GTGCAC	1 cut(s)	216
ApeKI	GCWGC	1 cut(s)	57
ApoI	RAATTY	1 cut(s)	455
AsiGI	ACCGGT	1 cut(s)	102
Asp718I	GGTACC	1 cut(s)	341
AspS9I	GGNCC	1 cut(s)	435
AsuHPI	GGTGA	2 cut(s)	85, 127
AsuII	TTCGAA	1 cut(s)	321
AsuNHI	GCTAGC	1 cut(s)	53
AvaII	GGWCC	1 cut(s)	435
BaeGI	GKGCMC	1 cut(s)	220
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	269, 341
BbsI	GAAGAC	1 cut(s)	151
Bbv12I	GWGCWC	1 cut(s)	220
BbvI	GCAGC	1 cut(s)	44
BccI	CCATC	2 cut(s)	231, 497
BciVI	GTATCC	1 cut(s)	389
BcoDI	GTCTC	1 cut(s)	266
BfaI	CTAG	2 cut(s)	54, 287
BfuI	GTATCC	1 cut(s)	389
BisI	GCNGC	2 cut(s)	51, 58
BlsI	GCNGC	2 cut(s)	52, 59
Bme18I	GGWCC	1 cut(s)	435
BmgT120I	GGNCC	1 cut(s)	435
BmiI	GGNNCC	4 cut(s)	271, 343, 436, 487
BmrI	ACTGGG	1 cut(s)	205
BmsI	GCATC	1 cut(s)	379
BmtI	GCTAGC	1 cut(s)	57
BmuI	ACTGGG	1 cut(s)	205
BpiI	GAAGAC	1 cut(s)	151
BpmI	CTGGAG	1 cut(s)	264
Bpu14I	TTCGAA	1 cut(s)	321
BpuEI	CTTGAG	1 cut(s)	336
BsaI	GGTCTC	1 cut(s)	266
BsaWI	WCCGGW	1 cut(s)	102
BsaXI	ACNNNNNCTCC	2 cut(s)	262, 292
Bsc4I	CCNNNNNNNGG	2 cut(s)	102, 287
Bse118I	RCCGGY	1 cut(s)	102
Bse1I	ACTGG	2 cut(s)	173, 200
BseGI	GGATG	1 cut(s)	489
BseLI	CCNNNNNNNGG	2 cut(s)	102, 287
BseMII	CTCAG	1 cut(s)	567
BseNI	ACTGG	2 cut(s)	173, 200
BseSI	GKGCMC	1 cut(s)	220
BseXI	GCAGC	1 cut(s)	44
BseYI	CCCAGC	1 cut(s)	493
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	2 cut(s)	269, 341
BshTI	ACCGGT	1 cut(s)	102
BsiHKAI	GWGCWC	1 cut(s)	220
BsiSI	CCGG	1 cut(s)	103
BslI	CCNNNNNNNGG	2 cut(s)	102, 287
BsmAI	GTCTC	1 cut(s)	266
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	266
Bsp119I	TTCGAA	1 cut(s)	321
Bsp1286I	GDGCHC	1 cut(s)	220
Bsp143I	GATC	3 cut(s)	36, 310, 532
BspACI	CCGC	1 cut(s)	50
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	566
BspLI	GGNNCC	4 cut(s)	271, 343, 436, 487
BspOI	GCTAGC	1 cut(s)	57
BspQI	GCTCTTC	1 cut(s)	117
BspT104I	TTCGAA	1 cut(s)	321
BspT107I	GGYRCC	2 cut(s)	269, 341
BspTNI	GGTCTC	1 cut(s)	266
BsrFI	RCCGGY	1 cut(s)	102
BsrI	ACTGG	2 cut(s)	173, 200
BssAI	RCCGGY	1 cut(s)	102
BssMI	GATC	3 cut(s)	36, 310, 532
Bst4CI	ACNGT	2 cut(s)	131, 341
Bst6I	CTCTTC	1 cut(s)	117
BstBI	TTCGAA	1 cut(s)	321
BstC8I	GCNNGC	4 cut(s)	55, 220, 364, 368
BstDEI	CTNAG	2 cut(s)	391, 553
BstF5I	GGATG	1 cut(s)	489
BstKTI	GATC	3 cut(s)	39, 313, 535
BstMAI	GTCTC	1 cut(s)	266
BstMBI	GATC	3 cut(s)	36, 310, 532
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstSLI	GKGCMC	1 cut(s)	220
BstV1I	GCAGC	1 cut(s)	44
BstV2I	GAAGAC	1 cut(s)	151
BsuI	GTATCC	1 cut(s)	389
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	489
Cac8I	GCNNGC	4 cut(s)	55, 220, 364, 368
Cfr10I	RCCGGY	1 cut(s)	102
Cfr13I	GGNCC	1 cut(s)	435
Csp6I	GTAC	1 cut(s)	342
CspAI	ACCGGT	1 cut(s)	102
CviAII	CATG	2 cut(s)	426, 467
CviJI	RGCY	7 cut(s)	5, 53, 57, 241, 286, 362, 497
CviKI_1	RGCY	7 cut(s)	5, 53, 57, 241, 286, 362, 497
CviQI	GTAC	1 cut(s)	342
DdeI	CTNAG	2 cut(s)	391, 553
DpnI	GATC	3 cut(s)	38, 312, 534
DpnII	GATC	3 cut(s)	36, 310, 532
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
Eco31I	GGTCTC	1 cut(s)	266
Eco47I	GGWCC	1 cut(s)	435
EcoO109I	RGGNCCY	1 cut(s)	435
EcoRI	GAATTC	1 cut(s)	455
FaeI	CATG	2 cut(s)	429, 470
FaiI	YATR	9 cut(s)	31, 68, 155, 266, 427, 468, 500, 543, 560
FatI	CATG	2 cut(s)	425, 466
Fnu4HI	GCNGC	2 cut(s)	51, 58
FokI	GGATG	1 cut(s)	476
Fsp4HI	GCNGC	2 cut(s)	51, 58
FspBI	CTAG	2 cut(s)	54, 287
GluI	GCNGC	2 cut(s)	51, 58
GsaI	CCCAGC	1 cut(s)	497
GsuI	CTGGAG	1 cut(s)	264
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	103
Hin1II	CATG	2 cut(s)	429, 470
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HinfI	GANTC	3 cut(s)	204, 231, 418
HpaII	CCGG	1 cut(s)	103
HphI	GGTGA	2 cut(s)	85, 127
Hpy166II	GTNNAC	2 cut(s)	174, 218
Hpy188III	TCNNGA	5 cut(s)	25, 281, 314, 353, 452
Hpy8I	GTNNAC	2 cut(s)	174, 218
HpyCH4III	ACNGT	2 cut(s)	131, 341
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	3 cut(s)	218, 370, 523
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
HpyF3I	CTNAG	2 cut(s)	391, 553
HpySE526I	ACGT	1 cut(s)	246
Hsp92II	CATG	2 cut(s)	429, 470
KpnI	GGTACC	1 cut(s)	345
Kzo9I	GATC	3 cut(s)	36, 310, 532
LguI	GCTCTTC	1 cut(s)	117
Lsp1109I	GCAGC	1 cut(s)	44
LweI	GCATC	1 cut(s)	379
MaeI	CTAG	2 cut(s)	54, 287
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	3 cut(s)	10, 191, 205
MalI	GATC	3 cut(s)	38, 312, 534
MboI	GATC	3 cut(s)	36, 310, 532
MboII	GAAGA	3 cut(s)	13, 104, 151
MhlI	GDGCHC	1 cut(s)	220
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	356, 455, 460, 476, 528
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	213
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	4 cut(s)	40, 156, 288, 360
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	62, 87, 387
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	103
MwoI	GCNNNNNNNGC	1 cut(s)	116
NdeII	GATC	3 cut(s)	36, 310, 532
NheI	GCTAGC	1 cut(s)	53
NlaIII	CATG	2 cut(s)	429, 470
NlaIV	GGNNCC	4 cut(s)	271, 343, 436, 487
NmuCI	GTSAC	1 cut(s)	205
NspV	TTCGAA	1 cut(s)	321
PciSI	GCTCTTC	1 cut(s)	117
PcsI	WCGNNNNNNNCGW	1 cut(s)	226
PfeI	GAWTC	2 cut(s)	231, 418
PinAI	ACCGGT	1 cut(s)	102
PkrI	GCNGC	2 cut(s)	52, 59
PleI	GAGTC	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	212
PpuMI	RGGWCCY	1 cut(s)	435
PsiI	TTATAA	1 cut(s)	543
Psp5II	RGGWCCY	1 cut(s)	435
PspFI	CCCAGC	1 cut(s)	493
PspN4I	GGNNCC	4 cut(s)	271, 343, 436, 487
PspPI	GGNCC	1 cut(s)	435
PspPPI	RGGWCCY	1 cut(s)	435
PsrI	GAACNNNNNNTAC	2 cut(s)	236, 268
RsaI	GTAC	1 cut(s)	343
RsaNI	GTAC	1 cut(s)	342
SapI	GCTCTTC	1 cut(s)	117
SaqAI	TTAA	3 cut(s)	62, 87, 387
SatI	GCNGC	2 cut(s)	51, 58
Sau3AI	GATC	3 cut(s)	36, 310, 532
Sau96I	GGNCC	1 cut(s)	435
SchI	GAGTC	1 cut(s)	213
SduI	GDGCHC	1 cut(s)	220
SetI	ASST	7 cut(s)	59, 243, 249, 288, 347, 499, 559
SfaNI	GCATC	1 cut(s)	379
SfuI	TTCGAA	1 cut(s)	321
SinI	GGWCC	1 cut(s)	435
SmlI	CTYRAG	1 cut(s)	351
SmoI	CTYRAG	1 cut(s)	351
Sse9I	AATT	5 cut(s)	356, 455, 460, 476, 528
SsiI	CCGC	1 cut(s)	50
SspI	AATATT	1 cut(s)	504
SspMI	CTAG	2 cut(s)	54, 287
TaaI	ACNGT	2 cut(s)	131, 341
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	3 cut(s)	148, 229, 321
TasI	AATT	5 cut(s)	356, 455, 460, 476, 528
TauI	GCSGC	1 cut(s)	53
TfiI	GAWTC	2 cut(s)	231, 418
Tru1I	TTAA	3 cut(s)	62, 87, 387
Tru9I	TTAA	3 cut(s)	62, 87, 387
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	1 cut(s)	57
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	1 cut(s)	455
TspGWI	ACGGA	1 cut(s)	411
VneI	GTGCAC	1 cut(s)	216
VpaK11BI	GGWCC	1 cut(s)	435
XapI	RAATTY	1 cut(s)	455
XspI	CTAG	2 cut(s)	54, 287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.