Rmu_sc0011398.1_g000001

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011398.1
Physical Location & Seq
Forward (+)
7844 .. 8386
543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011398.1_g000001.1.cds

Sequence Viewer

Length: 543 bp
atgatatacttgatctgttgtgaggcggctagctgcttaactatggcagcacaaaccaaccttaacatcaccacagaccagtctgctcttcttgctctcaaagctcgtatcaccaatgaccctcaaaatatagtcttcaccaactggtcaaccacaacccctgtttgtaactgggttggagtcacttgtggtgtacgccatcatcgaatcgcagagttgaacgtatctggctttggtctcacatgcaccattcctccagagctaggcaacttatcttttcttgttgttctggacttcaaaaataatagttttcacggtatcttgcctcaagaattggcttgcctgcgtcggttgaagtttataagcttgagaaacaacaagttcatgggagtcattccatcatggtttggctccttattcaaacttcaagtattcgatttgtttggtaatcaattttcaggttccataccagctacaatcttcaacttatctgctctgcaaataattattctgagttataaccaactctcaggtatgaactaa

Protein Analysis

180

Amino Acids

19.91

Weight (kDa)

8.54

Isoelectric Point (pI)

37.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 362, 519
AciI CCGC 1 cut(s) 26
AfaI GTAC 1 cut(s) 195
AfiI CCNNNNNNNGG 1 cut(s) 263
AgsI TTSAA 6 cut(s) 220, 298, 355, 421, 428, 484
AluBI AGCT 5 cut(s) 33, 104, 262, 366, 473
AluI AGCT 5 cut(s) 33, 104, 262, 366, 473
Alw26I GTCTC 1 cut(s) 242
ApeKI GCWGC 2 cut(s) 33, 47
AsuHPI GGTGA 3 cut(s) 61, 103, 130
AsuNHI GCTAGC 1 cut(s) 29
BbsI GAAGAC 1 cut(s) 127
BbvI GCAGC 2 cut(s) 20, 59
BccI CCATC 2 cut(s) 207, 406
BcoDI GTCTC 1 cut(s) 242
BfaI CTAG 2 cut(s) 30, 263
BisI GCNGC 3 cut(s) 27, 34, 48
BlsI GCNGC 3 cut(s) 28, 35, 49
BmiI GGNNCC 2 cut(s) 412, 463
BmrI ACTGGG 1 cut(s) 181
BmtI GCTAGC 1 cut(s) 33
BmuI ACTGGG 1 cut(s) 181
BpiI GAAGAC 1 cut(s) 127
BpmI CTGGAG 1 cut(s) 240
BpuEI CTTGAG 2 cut(s) 312, 388
BsaI GGTCTC 1 cut(s) 242
BsaXI ACNNNNNCTCC 2 cut(s) 238, 268
Bsc4I CCNNNNNNNGG 1 cut(s) 263
Bse1I ACTGG 3 cut(s) 79, 149, 176
BseLI CCNNNNNNNGG 1 cut(s) 263
BseMII CTCAG 2 cut(s) 503, 543
BseNI ACTGG 3 cut(s) 79, 149, 176
BseXI GCAGC 2 cut(s) 20, 59
BslI CCNNNNNNNGG 1 cut(s) 263
BsmAI GTCTC 1 cut(s) 242
Bso31I GGTCTC 1 cut(s) 242
Bsp143I GATC 1 cut(s) 12
BspACI CCGC 1 cut(s) 26
BspCNI CTCAG 2 cut(s) 504, 542
BspLI GGNNCC 2 cut(s) 412, 463
BspOI GCTAGC 1 cut(s) 33
BspQI GCTCTTC 1 cut(s) 93
BspTNI GGTCTC 1 cut(s) 242
BsrI ACTGG 3 cut(s) 79, 149, 176
BssMI GATC 1 cut(s) 12
Bst4CI ACNGT 1 cut(s) 317
Bst6I CTCTTC 1 cut(s) 93
BstC8I GCNNGC 3 cut(s) 31, 340, 344
BstDEI CTNAG 2 cut(s) 512, 529
BstKTI GATC 1 cut(s) 15
BstMAI GTCTC 1 cut(s) 242
BstMBI GATC 1 cut(s) 12
BstMWI GCNNNNNNNGC 2 cut(s) 92, 101
BstNSI RCATGY 1 cut(s) 246
BstV1I GCAGC 2 cut(s) 20, 59
BstV2I GAAGAC 1 cut(s) 127
Cac8I GCNNGC 3 cut(s) 31, 340, 344
CseI GACGC 1 cut(s) 335
Csp6I GTAC 1 cut(s) 194
CviAII CATG 3 cut(s) 243, 385, 402
CviJI RGCY 9 cut(s) 29, 33, 104, 231, 262, 338, 366, 411, 473
CviKI_1 RGCY 9 cut(s) 29, 33, 104, 231, 262, 338, 366, 411, 473
CviQI GTAC 1 cut(s) 194
DdeI CTNAG 2 cut(s) 512, 529
DpnI GATC 1 cut(s) 14
DpnII GATC 1 cut(s) 12
Eam1104I CTCTTC 1 cut(s) 93
EarI CTCTTC 1 cut(s) 93
Eco31I GGTCTC 1 cut(s) 242
FaeI CATG 3 cut(s) 246, 388, 405
FatI CATG 3 cut(s) 242, 384, 401
Fnu4HI GCNGC 3 cut(s) 27, 34, 48
Fsp4HI GCNGC 3 cut(s) 27, 34, 48
FspBI CTAG 2 cut(s) 30, 263
GluI GCNGC 3 cut(s) 27, 34, 48
GsuI CTGGAG 1 cut(s) 240
HgaI GACGC 1 cut(s) 335
Hin1II CATG 3 cut(s) 246, 388, 405
HincII GTYRAC 1 cut(s) 150
HindII GTYRAC 1 cut(s) 150
HindIII AAGCTT 1 cut(s) 364
HinfI GANTC 3 cut(s) 180, 207, 390
HphI GGTGA 3 cut(s) 61, 103, 130
Hpy166II GTNNAC 2 cut(s) 150, 194
Hpy188I TCNGA 1 cut(s) 513
Hpy188III TCNNGA 3 cut(s) 257, 290, 329
Hpy8I GTNNAC 2 cut(s) 150, 194
Hpy99I CGWCG 1 cut(s) 351
HpyCH4III ACNGT 1 cut(s) 317
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 2 cut(s) 246, 499
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 101
HpyF3I CTNAG 2 cut(s) 512, 529
HpySE526I ACGT 1 cut(s) 222
Hsp92II CATG 3 cut(s) 246, 388, 405
Kzo9I GATC 1 cut(s) 12
LguI GCTCTTC 1 cut(s) 93
LmnI GCTCC 1 cut(s) 416
Lsp1109I GCAGC 2 cut(s) 20, 59
MaeI CTAG 2 cut(s) 30, 263
MaeII ACGT 1 cut(s) 222
MaeIII GTNAC 2 cut(s) 167, 181
MalI GATC 1 cut(s) 14
MboI GATC 1 cut(s) 12
MboII GAAGA 3 cut(s) 80, 127, 472
MluCI AATT 3 cut(s) 332, 452, 504
MlyI GAGTC 2 cut(s) 189, 399
MmeI TCCRAC 1 cut(s) 157
MnlI CCTC 4 cut(s) 16, 132, 264, 336
MseI TTAA 2 cut(s) 38, 63
MwoI GCNNNNNNNGC 2 cut(s) 92, 101
NdeII GATC 1 cut(s) 12
NheI GCTAGC 1 cut(s) 29
NlaIII CATG 3 cut(s) 246, 388, 405
NlaIV GGNNCC 2 cut(s) 412, 463
NmuCI GTSAC 1 cut(s) 181
NspI RCATGY 1 cut(s) 246
PciSI GCTCTTC 1 cut(s) 93
PcsI WCGNNNNNNNCGW 1 cut(s) 202
PfeI GAWTC 1 cut(s) 207
PkrI GCNGC 3 cut(s) 28, 35, 49
PleI GAGTC 2 cut(s) 188, 398
PpsI GAGTC 2 cut(s) 188, 398
PsiI TTATAA 2 cut(s) 362, 519
PspN4I GGNNCC 2 cut(s) 412, 463
RsaI GTAC 1 cut(s) 195
RsaNI GTAC 1 cut(s) 194
SapI GCTCTTC 1 cut(s) 93
SaqAI TTAA 2 cut(s) 38, 63
SatI GCNGC 3 cut(s) 27, 34, 48
Sau3AI GATC 1 cut(s) 12
SchI GAGTC 2 cut(s) 189, 399
SetI ASST 9 cut(s) 35, 63, 106, 225, 264, 368, 463, 475, 535
SmlI CTYRAG 2 cut(s) 327, 367
SmoI CTYRAG 2 cut(s) 327, 367
Sse9I AATT 3 cut(s) 332, 452, 504
SsiI CCGC 1 cut(s) 26
SspMI CTAG 2 cut(s) 30, 263
TaaI ACNGT 1 cut(s) 317
TaiI ACGT 1 cut(s) 225
TaqI TCGA 2 cut(s) 205, 435
TasI AATT 3 cut(s) 332, 452, 504
TauI GCSGC 1 cut(s) 29
TfiI GAWTC 1 cut(s) 207
Tru1I TTAA 2 cut(s) 38, 63
Tru9I TTAA 2 cut(s) 38, 63
TseFI GTSAC 1 cut(s) 181
TseI GCWGC 2 cut(s) 33, 47
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 1 cut(s) 373
XceI RCATGY 1 cut(s) 246
XspI CTAG 2 cut(s) 30, 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.