Rh4DG110500
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Forward (+)
17244474 .. 17257576
13103 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG110500.1

Sequence Viewer

Length: 963 bp
ATGCTGTATGCCAACCAGTTGGAGGGAAACATCCCTCCAACTTTGTATCGCTGTGAAAAGCTTGAAATTATTAGCCTTGCAATAAACAAGCTTAGCGGCCATATACCTGAAGAGTTGGCTTTCTTACCCAGACTTGAGCAACTATTTCTTGTTCACAATAATTTGTCTGGTGGAGTTCCACCAATTTTGGGTAACATTTCAACATTAGTAGTATTGGATATGTCCTATAACGGCCTTACTGGTTCACTTCCTTCTTCCCTGTTTAACCTGTCTTCTTTAGGTAGTCTTTCTGTGCACCAAAATTTCCTTTCTGGAAGTTTTCTTGATGTTGATCTCTGCCGTTCTTGGCCTAGACTTCAATTCCTTTCTCTTACTCTCAATAATTTCAGTGGCCGGCTTCCTAACCTCAGCAATTGTACAGAGCTTGTCATATTGTCTTTATCACATAATAAGTTTGTGGGAAAAATTCCAGCAGATATTGGCAACTTCAAAAACCTTGAAGAACTTTATCTTGATTTTAATAGCCTCACTGGTACTATACCTCCTACCATAGGTAACTTGTCCAGCTTGAAATCCTTGGGTTTAACGCAGAATAACGTTAAGGGAAGCATACCTCGTGATTTAGGACGTCTTTCTAGATTGGTCAAATTTTTGATTTGTAGGAATGGCCTAAGCGGACCAGTGCCTCCAGAAATATTCAATATCTCTTCTCTGCAAGTTATTGAAGCATGCGATAATGCCCTTTCAGGAAAGTTTCCTTCCTCTTCTGCAGTTCGGCTTCCTAGCATTGAATTCATCTCTTTTCCTCACAATAAAATTACTGGACATGTCCCATCCTATTTTGCAAATTTTACAAAGCTTTACTCACTTCAGAGGTCAAAGGCCCAAAGCAACTTGTCCAATGTAATATGTAGTGCAGAAACACTTCAGTCAAGATTCAAAATCTCTGGAGTTGGCTTTTAA

Protein Analysis

320

Amino Acids

34.94

Weight (kDa)

8.89

Isoelectric Point (pI)

48.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 127 - 243 6.3e-08 Leucine-rich repeat region
LRR_8 PF13855 165 - 222 2.9e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 631
AciI CCGC 2 cut(s) 96, 675
AclI AACGTT 1 cut(s) 597
AcoI YGGCCR 2 cut(s) 97, 391
AcsI RAATTY 5 cut(s) 301, 465, 647, 791, 847
AcuI CTGAAG 3 cut(s) 129, 854, 911
AcyI GRCGYC 1 cut(s) 628
AfaI GTAC 2 cut(s) 418, 535
AfiI CCNNNNNNNGG 3 cut(s) 22, 188, 551
AflIII ACRYGT 1 cut(s) 826
AluBI AGCT 5 cut(s) 61, 91, 424, 567, 859
AluI AGCT 5 cut(s) 61, 91, 424, 567, 859
Alw21I GWGCWC 1 cut(s) 297
Alw44I GTGCAC 1 cut(s) 293
AoxI GGCC 6 cut(s) 97, 232, 347, 391, 667, 882
ApaLI GTGCAC 1 cut(s) 293
ApoI RAATTY 5 cut(s) 301, 465, 647, 791, 847
Asp700I GAANNNNTTC 1 cut(s) 924
AspS9I GGNCC 2 cut(s) 677, 883
AvaII GGWCC 1 cut(s) 677
BaeGI GKGCMC 1 cut(s) 297
BauI CACGAG 1 cut(s) 615
BbsI GAAGAC 1 cut(s) 264
Bbv12I GWGCWC 1 cut(s) 297
BbvCI CCTCAGC 1 cut(s) 407
BccI CCATC 1 cut(s) 841
BceAI ACGGC 2 cut(s) 247, 324
BfaI CTAG 3 cut(s) 351, 636, 783
BfmI CTRYAG 1 cut(s) 768
BisI GCNGC 1 cut(s) 97
BlpI GCTNAGC 1 cut(s) 92
BlsI GCNGC 1 cut(s) 98
Bme18I GGWCC 1 cut(s) 677
BmgT120I GGNCC 2 cut(s) 677, 883
BpiI GAAGAC 1 cut(s) 264
BpmI CTGGAG 1 cut(s) 672
Bpu10I CCTNAGC 2 cut(s) 407, 671
Bpu1102I GCTNAGC 1 cut(s) 92
BpuEI CTTGAG 1 cut(s) 155
BsaBI GATNNNNATC 1 cut(s) 330
BsaHI GRCGYC 1 cut(s) 628
BsaJI CCNNGG 1 cut(s) 576
BsaXI ACNNNNNCTCC 2 cut(s) 526, 556
Bsc4I CCNNNNNNNGG 3 cut(s) 22, 188, 551
Bse118I RCCGGY 1 cut(s) 393
Bse1I ACTGG 5 cut(s) 16, 244, 535, 680, 826
Bse8I GATNNNNATC 1 cut(s) 330
BseDI CCNNGG 1 cut(s) 576
BseGI GGATG 2 cut(s) 30, 833
BseJI GATNNNNATC 1 cut(s) 330
BseLI CCNNNNNNNGG 3 cut(s) 22, 188, 551
BseMII CTCAG 1 cut(s) 421
BseNI ACTGG 5 cut(s) 16, 244, 535, 680, 826
BseSI GKGCMC 1 cut(s) 297
BsgI GTGCAG 1 cut(s) 936
BshFI GGCC 6 cut(s) 99, 234, 349, 393, 669, 884
BsiHKAI GWGCWC 1 cut(s) 297
BsiSI CCGG 1 cut(s) 394
BslFI GGGAC 1 cut(s) 815
BslI CCNNNNNNNGG 3 cut(s) 22, 188, 551
BsmFI GGGAC 1 cut(s) 815
BsnI GGCC 6 cut(s) 99, 234, 349, 393, 669, 884
Bsp1286I GDGCHC 1 cut(s) 297
Bsp1407I TGTACA 1 cut(s) 416
Bsp143I GATC 1 cut(s) 331
Bsp1720I GCTNAGC 1 cut(s) 92
BspACI CCGC 2 cut(s) 96, 675
BspANI GGCC 6 cut(s) 99, 234, 349, 393, 669, 884
BspCNI CTCAG 1 cut(s) 420
BspMAI CTGCAG 1 cut(s) 772
BsrFI RCCGGY 1 cut(s) 393
BsrGI TGTACA 1 cut(s) 416
BsrI ACTGG 5 cut(s) 16, 244, 535, 680, 826
BssAI RCCGGY 1 cut(s) 393
BssECI CCNNGG 1 cut(s) 576
BssMI GATC 1 cut(s) 331
BssNI GRCGYC 1 cut(s) 628
BssSI CACGAG 1 cut(s) 615
BssT1I CCWWGG 1 cut(s) 576
Bst2BI CACGAG 1 cut(s) 615
Bst6I CTCTTC 3 cut(s) 105, 712, 769
BstACI GRCGYC 1 cut(s) 628
BstAUI TGTACA 1 cut(s) 416
BstC8I GCNNGC 2 cut(s) 395, 730
BstDEI CTNAG 3 cut(s) 92, 407, 671
BstENI CCTNNNNNAGG 1 cut(s) 549
BstF5I GGATG 2 cut(s) 30, 833
BstKTI GATC 1 cut(s) 334
BstMBI GATC 1 cut(s) 331
BstNSI RCATGY 2 cut(s) 732, 830
BstSFI CTRYAG 1 cut(s) 768
BstSLI GKGCMC 1 cut(s) 297
BstV2I GAAGAC 1 cut(s) 264
BstXI CCANNNNNNTGG 1 cut(s) 19
BsuRI GGCC 6 cut(s) 99, 234, 349, 393, 669, 884
BtsCI GGATG 2 cut(s) 30, 833
BtsIMutI CAGTG 3 cut(s) 394, 528, 687
Cac8I GCNNGC 2 cut(s) 395, 730
Cfr10I RCCGGY 1 cut(s) 393
Cfr13I GGNCC 2 cut(s) 677, 883
Csp6I GTAC 2 cut(s) 417, 534
CspCI CAANNNNNGTGG 2 cut(s) 168, 203
CviAII CATG 2 cut(s) 729, 827
CviQI GTAC 2 cut(s) 417, 534
DdeI CTNAG 3 cut(s) 92, 407, 671
DpnI GATC 1 cut(s) 333
DpnII GATC 1 cut(s) 331
EaeI YGGCCR 2 cut(s) 97, 391
Eam1104I CTCTTC 3 cut(s) 105, 712, 769
EarI CTCTTC 3 cut(s) 105, 712, 769
Eco130I CCWWGG 1 cut(s) 576
Eco47I GGWCC 1 cut(s) 677
Eco57I CTGAAG 3 cut(s) 129, 854, 911
EcoNI CCTNNNNNAGG 1 cut(s) 549
EcoRI GAATTC 1 cut(s) 791
EcoT14I CCWWGG 1 cut(s) 576
ErhI CCWWGG 1 cut(s) 576
FaeI CATG 2 cut(s) 732, 830
FaqI GGGAC 1 cut(s) 815
FatI CATG 2 cut(s) 728, 826
Fnu4HI GCNGC 1 cut(s) 97
FokI GGATG 2 cut(s) 17, 820
Fsp4HI GCNGC 1 cut(s) 97
FspBI CTAG 3 cut(s) 351, 636, 783
GluI GCNGC 1 cut(s) 97
GsuI CTGGAG 1 cut(s) 672
HaeIII GGCC 6 cut(s) 99, 234, 349, 393, 669, 884
HapII CCGG 1 cut(s) 394
Hin1I GRCGYC 1 cut(s) 628
Hin1II CATG 2 cut(s) 732, 830
HindIII AAGCTT 3 cut(s) 59, 89, 857
HinfI GANTC 1 cut(s) 936
HpaII CCGG 1 cut(s) 394
Hpy166II GTNNAC 3 cut(s) 154, 245, 295
Hpy188I TCNGA 1 cut(s) 873
Hpy188III TCNNGA 9 cut(s) 312, 323, 512, 617, 636, 689, 747, 933, 948
Hpy8I GTNNAC 3 cut(s) 154, 245, 295
HpyAV CCTTC 2 cut(s) 261, 768
HpyCH4IV ACGT 2 cut(s) 597, 628
HpyCH4V TGCA 6 cut(s) 80, 295, 715, 770, 845, 917
HpyF3I CTNAG 3 cut(s) 92, 407, 671
HpySE526I ACGT 2 cut(s) 597, 628
Hsp92I GRCGYC 1 cut(s) 628
Hsp92II CATG 2 cut(s) 732, 830
KroI GCCGGC 1 cut(s) 393
KroNI GCCGGC 1 cut(s) 395
Kzo9I GATC 1 cut(s) 331
MaeI CTAG 3 cut(s) 351, 636, 783
MaeII ACGT 2 cut(s) 597, 628
MaeIII GTNAC 2 cut(s) 191, 554
MalI GATC 1 cut(s) 333
MboI GATC 1 cut(s) 331
MboII GAAGA 6 cut(s) 122, 246, 264, 512, 699, 756
MfeI CAATTG 1 cut(s) 412
MhlI GDGCHC 1 cut(s) 297
MmeI TCCRAC 1 cut(s) 62
MroNI GCCGGC 1 cut(s) 393
MroXI GAANNNNTTC 1 cut(s) 924
MseI TTAA 5 cut(s) 264, 519, 584, 600, 961
MspI CCGG 1 cut(s) 394
MunI CAATTG 1 cut(s) 412
NaeI GCCGGC 1 cut(s) 395
NdeII GATC 1 cut(s) 331
NgoMIV GCCGGC 1 cut(s) 393
NlaIII CATG 2 cut(s) 732, 830
NspI RCATGY 2 cut(s) 732, 830
PaeI GCATGC 1 cut(s) 732
PciI ACATGT 1 cut(s) 826
PdiI GCCGGC 1 cut(s) 395
PdmI GAANNNNTTC 1 cut(s) 924
PfeI GAWTC 1 cut(s) 936
PkrI GCNGC 1 cut(s) 98
PscI ACATGT 1 cut(s) 826
Psp1406I AACGTT 1 cut(s) 597
PspPI GGNCC 2 cut(s) 677, 883
PstI CTGCAG 1 cut(s) 772
RsaI GTAC 2 cut(s) 418, 535
RsaNI GTAC 2 cut(s) 417, 534
SaqAI TTAA 5 cut(s) 264, 519, 584, 600, 961
SatI GCNGC 1 cut(s) 97
Sau3AI GATC 1 cut(s) 331
Sau96I GGNCC 2 cut(s) 677, 883
SduI GDGCHC 1 cut(s) 297
SfcI CTRYAG 1 cut(s) 768
SinI GGWCC 1 cut(s) 677
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
SphI GCATGC 1 cut(s) 732
SsiI CCGC 2 cut(s) 96, 675
SspI AATATT 1 cut(s) 696
SspMI CTAG 3 cut(s) 351, 636, 783
StyI CCWWGG 1 cut(s) 576
TaiI ACGT 2 cut(s) 600, 631
TatI WGTACW 1 cut(s) 416
TauI GCSGC 1 cut(s) 99
TfiI GAWTC 1 cut(s) 936
Tru1I TTAA 5 cut(s) 264, 519, 584, 600, 961
Tru9I TTAA 5 cut(s) 264, 519, 584, 600, 961
TscAI CASTG 3 cut(s) 394, 535, 687
TspDTI ATGAA 1 cut(s) 784
TspRI CASTG 3 cut(s) 394, 535, 687
VneI GTGCAC 1 cut(s) 293
VpaK11BI GGWCC 1 cut(s) 677
XagI CCTNNNNNAGG 1 cut(s) 549
XapI RAATTY 5 cut(s) 301, 465, 647, 791, 847
XbaI TCTAGA 1 cut(s) 635
XceI RCATGY 2 cut(s) 732, 830
XmnI GAANNNNTTC 1 cut(s) 924
XspI CTAG 3 cut(s) 351, 636, 783
ZraI GACGTC 1 cut(s) 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.