Rh2CG249800

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Reverse (-)
26415917 .. 26416623
707 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG249800.1

Sequence Viewer

Length: 597 bp
ATGGAGAGAGTTACTTGGTTCTTCCTGATATACTTGATCTGTTGTGAGGCGGCTAGCTGCTTAACTACGGTAGCACAAACCAACCTTAACATCACCACAGACCGGTCTGCTCTTCTTGCTTTCAAAGCCTGTATCACCAATGACCCTAGAAACATAGTCTTCACTAACTGGTCAACCACAACCCCTGTTTGTAATTGGGTTGGAGTCACTTGTGGTGAACGCCATCATCGAGTCGCAGACTTGAACCTCTCTTACTTTGGTCTCACAGGCACCATTCCTCCGGAGTTAGGAAACTTATCATTTCTTGTTAATATGGACTTCAGCAATAACAGTTTCCATGGTATATTGCCTAAGGAATTGGCTTGCTTGCGTCGGTTGAAGTTTATCAGCTTGGGAAACAACAAGTTCGTGAGTGTCATTCCGTCATGGTTTGGGTCCTTATTCAAACTTCAAGTATTCAGTTTGTTTGGTAATCAATTTTCAGGTTCCATACCAGCTACAATCTTCAACTTATCTACTCTGCGAATAATTGATCTGAGTTATAACCAACTCTCAGGTTCCATACCAGCTACAATCTTCAACTTATCTGCTCTGTAA

Protein Analysis

198

Amino Acids

22.0

Weight (kDa)

8.53

Isoelectric Point (pI)

25.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 33 - 71 3.4e-11 Leucine rich repeat N-terminal domain
LRR_14 PF23598 82 - 156 8.6e-06 Leucine-rich repeat region
LRR_8 PF13855 124 - 184 3.3e-08 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 543
AccB1I GGYRCC 1 cut(s) 269
AccIII TCCGGA 1 cut(s) 280
AciI CCGC 1 cut(s) 50
AcuI CTGAAG 1 cut(s) 304
AfiI CCNNNNNNNGG 2 cut(s) 102, 287
AgeI ACCGGT 1 cut(s) 102
AgsI TTSAA 7 cut(s) 124, 244, 379, 445, 452, 508, 580
AluBI AGCT 4 cut(s) 57, 390, 497, 569
AluI AGCT 4 cut(s) 57, 390, 497, 569
Alw26I GTCTC 1 cut(s) 266
Aor13HI TCCGGA 1 cut(s) 280
ApeKI GCWGC 1 cut(s) 57
AsiGI ACCGGT 1 cut(s) 102
AspS9I GGNCC 1 cut(s) 435
AsuHPI GGTGA 3 cut(s) 85, 127, 227
AsuNHI GCTAGC 1 cut(s) 53
AvaII GGWCC 1 cut(s) 435
AxyI CCTNAGG 1 cut(s) 351
BanI GGYRCC 1 cut(s) 269
BbsI GAAGAC 1 cut(s) 151
BbvI GCAGC 1 cut(s) 44
BccI CCATC 1 cut(s) 231
BcoDI GTCTC 1 cut(s) 266
BfaI CTAG 2 cut(s) 54, 147
BisI GCNGC 2 cut(s) 51, 58
BlsI GCNGC 2 cut(s) 52, 59
Bme18I GGWCC 1 cut(s) 435
BmgT120I GGNCC 1 cut(s) 435
BmiI GGNNCC 4 cut(s) 271, 436, 487, 559
BmtI GCTAGC 1 cut(s) 57
BpiI GAAGAC 1 cut(s) 151
BsaI GGTCTC 1 cut(s) 266
BsaJI CCNNGG 1 cut(s) 337
BsaWI WCCGGW 2 cut(s) 102, 280
BsaXI ACNNNNNCTCC 2 cut(s) 262, 292
Bsc4I CCNNNNNNNGG 2 cut(s) 102, 287
Bse118I RCCGGY 1 cut(s) 102
Bse1I ACTGG 1 cut(s) 173
Bse21I CCTNAGG 1 cut(s) 351
BseAI TCCGGA 1 cut(s) 280
BseDI CCNNGG 1 cut(s) 337
BseLI CCNNNNNNNGG 2 cut(s) 102, 287
BseMII CTCAG 2 cut(s) 527, 567
BseNI ACTGG 1 cut(s) 173
BseXI GCAGC 1 cut(s) 44
BshNI GGYRCC 1 cut(s) 269
BshTI ACCGGT 1 cut(s) 102
BsiSI CCGG 2 cut(s) 103, 281
BslI CCNNNNNNNGG 2 cut(s) 102, 287
BsmAI GTCTC 1 cut(s) 266
Bso31I GGTCTC 1 cut(s) 266
Bsp13I TCCGGA 1 cut(s) 280
Bsp143I GATC 2 cut(s) 36, 532
Bsp19I CCATGG 1 cut(s) 337
BspACI CCGC 1 cut(s) 50
BspCNI CTCAG 2 cut(s) 528, 566
BspEI TCCGGA 1 cut(s) 280
BspLI GGNNCC 4 cut(s) 271, 436, 487, 559
BspOI GCTAGC 1 cut(s) 57
BspQI GCTCTTC 1 cut(s) 117
BspT107I GGYRCC 1 cut(s) 269
BspTNI GGTCTC 1 cut(s) 266
BsrFI RCCGGY 1 cut(s) 102
BsrI ACTGG 1 cut(s) 173
BssAI RCCGGY 1 cut(s) 102
BssECI CCNNGG 1 cut(s) 337
BssMI GATC 2 cut(s) 36, 532
BssT1I CCWWGG 1 cut(s) 337
Bst4CI ACNGT 2 cut(s) 70, 332
Bst6I CTCTTC 1 cut(s) 117
BstC8I GCNNGC 3 cut(s) 55, 364, 368
BstDEI CTNAG 3 cut(s) 351, 536, 553
BstDSI CCRYGG 1 cut(s) 337
BstKTI GATC 2 cut(s) 39, 535
BstMAI GTCTC 1 cut(s) 266
BstMBI GATC 2 cut(s) 36, 532
BstMWI GCNNNNNNNGC 2 cut(s) 116, 125
BstV1I GCAGC 1 cut(s) 44
BstV2I GAAGAC 1 cut(s) 151
Bsu36I CCTNAGG 1 cut(s) 351
BtgI CCRYGG 1 cut(s) 337
Cac8I GCNNGC 3 cut(s) 55, 364, 368
Cfr10I RCCGGY 1 cut(s) 102
Cfr13I GGNCC 1 cut(s) 435
CseI GACGC 1 cut(s) 359
CspAI ACCGGT 1 cut(s) 102
CviAII CATG 2 cut(s) 338, 426
CviJI RGCY 7 cut(s) 53, 57, 128, 362, 390, 497, 569
CviKI_1 RGCY 7 cut(s) 53, 57, 128, 362, 390, 497, 569
DdeI CTNAG 3 cut(s) 351, 536, 553
DpnI GATC 2 cut(s) 38, 534
DpnII GATC 2 cut(s) 36, 532
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Eco130I CCWWGG 1 cut(s) 337
Eco31I GGTCTC 1 cut(s) 266
Eco47I GGWCC 1 cut(s) 435
Eco57I CTGAAG 1 cut(s) 304
Eco81I CCTNAGG 1 cut(s) 351
EcoO109I RGGNCCY 1 cut(s) 435
EcoT14I CCWWGG 1 cut(s) 337
ErhI CCWWGG 1 cut(s) 337
FaeI CATG 2 cut(s) 341, 429
FaiI YATR 9 cut(s) 31, 155, 314, 339, 344, 427, 491, 543, 563
FatI CATG 2 cut(s) 337, 425
Fnu4HI GCNGC 2 cut(s) 51, 58
Fsp4HI GCNGC 2 cut(s) 51, 58
FspBI CTAG 2 cut(s) 54, 147
GluI GCNGC 2 cut(s) 51, 58
HapII CCGG 2 cut(s) 103, 281
HgaI GACGC 1 cut(s) 359
Hin1II CATG 2 cut(s) 341, 429
HincII GTYRAC 1 cut(s) 174
HindII GTYRAC 1 cut(s) 174
HinfI GANTC 2 cut(s) 204, 231
HpaII CCGG 2 cut(s) 103, 281
HphI GGTGA 3 cut(s) 85, 127, 227
Hpy166II GTNNAC 2 cut(s) 174, 218
Hpy188I TCNGA 1 cut(s) 537
Hpy188III TCNNGA 3 cut(s) 25, 281, 409
Hpy8I GTNNAC 2 cut(s) 174, 218
Hpy99I CGWCG 1 cut(s) 375
HpyCH4III ACNGT 2 cut(s) 70, 332
HpyF10VI GCNNNNNNNGC 2 cut(s) 116, 125
HpyF3I CTNAG 3 cut(s) 351, 536, 553
Hsp92II CATG 2 cut(s) 341, 429
Kpn2I TCCGGA 1 cut(s) 280
Kzo9I GATC 2 cut(s) 36, 532
LguI GCTCTTC 1 cut(s) 117
Lsp1109I GCAGC 1 cut(s) 44
MaeI CTAG 2 cut(s) 54, 147
MaeIII GTNAC 2 cut(s) 10, 205
MalI GATC 2 cut(s) 38, 534
MboI GATC 2 cut(s) 36, 532
MboII GAAGA 5 cut(s) 13, 104, 151, 496, 568
MluCI AATT 4 cut(s) 193, 356, 476, 528
MlyI GAGTC 2 cut(s) 213, 240
MmeI TCCRAC 1 cut(s) 181
MnlI CCTC 3 cut(s) 40, 257, 288
MroI TCCGGA 1 cut(s) 280
MseI TTAA 3 cut(s) 62, 87, 309
MspI CCGG 2 cut(s) 103, 281
MwoI GCNNNNNNNGC 2 cut(s) 116, 125
NcoI CCATGG 1 cut(s) 337
NdeII GATC 2 cut(s) 36, 532
NheI GCTAGC 1 cut(s) 53
NlaIII CATG 2 cut(s) 341, 429
NlaIV GGNNCC 4 cut(s) 271, 436, 487, 559
NmuCI GTSAC 1 cut(s) 205
PciSI GCTCTTC 1 cut(s) 117
PcsI WCGNNNNNNNCGW 1 cut(s) 226
PinAI ACCGGT 1 cut(s) 102
PkrI GCNGC 2 cut(s) 52, 59
PleI GAGTC 2 cut(s) 212, 239
PpsI GAGTC 2 cut(s) 212, 239
PpuMI RGGWCCY 1 cut(s) 435
PsiI TTATAA 1 cut(s) 543
Psp5II RGGWCCY 1 cut(s) 435
PspN4I GGNNCC 4 cut(s) 271, 436, 487, 559
PspPI GGNCC 1 cut(s) 435
PspPPI RGGWCCY 1 cut(s) 435
PsrI GAACNNNNNNTAC 2 cut(s) 236, 268
SapI GCTCTTC 1 cut(s) 117
SaqAI TTAA 3 cut(s) 62, 87, 309
SatI GCNGC 2 cut(s) 51, 58
Sau3AI GATC 2 cut(s) 36, 532
Sau96I GGNCC 1 cut(s) 435
SchI GAGTC 2 cut(s) 213, 240
SetI ASST 8 cut(s) 59, 87, 249, 392, 487, 499, 559, 571
SinI GGWCC 1 cut(s) 435
Sse9I AATT 4 cut(s) 193, 356, 476, 528
SsiI CCGC 1 cut(s) 50
SspMI CTAG 2 cut(s) 54, 147
StyI CCWWGG 1 cut(s) 337
TaaI ACNGT 2 cut(s) 70, 332
TaqI TCGA 1 cut(s) 229
TasI AATT 4 cut(s) 193, 356, 476, 528
TauI GCSGC 1 cut(s) 53
Tru1I TTAA 3 cut(s) 62, 87, 309
Tru9I TTAA 3 cut(s) 62, 87, 309
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 1 cut(s) 57
Tsp45I GTSAC 1 cut(s) 205
TspGWI ACGGA 1 cut(s) 411
VpaK11BI GGWCC 1 cut(s) 435
XspI CTAG 2 cut(s) 54, 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.