RchiOBHm_Chr5g0016031

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
11077679 .. 11078266
588 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29643

Sequence Viewer

Length: 588 bp
ATGGAGAAAAGGCAGATTCTGTGGGGGAAAGTCTTGCTGGTGGTTTACTATTGTTGCACCATGGCTGCAGCGCAAACCAACTTCAGCACCGACCAGTCTGCTCTTCTTGCTCTCAAAGCACGTATTACCGGTGACCCTCAGAACAAGATCTTGACCAACTGGTCATCCAACTCCGACGTTTGCAACTGGGTCGGGGTCACTTGCGGTGAACGCCACCTTAGGGTCGTATTTTTGAACCTCTCTGAGTTTCATCTCACTGGCACCATTCCTCCGGAGCTAGGAAACCTATCATTTCTTGCTGGGATGCGCCTAGAAAATAACAGCTTCCATGGAACTATCCCAGGGGAATTGGCCGGTTTGCGGCGACTCACGTTGTTTAGCTTCGGATTCAATAATTTTGTGGGAGAGATTCCATCATGGTTGGGGTCCTTGTCCAAACTACAAATCCTCAATTTGTATGGCAATGGGTTTTCAGGTTCAATACCCACGGTTATCTTCAACTTGTCTGCACTACAAGTACTTGATCTCAGATATAATCAACTATCGGGTGAGTGGCAACAATCTATCTACATACAACTCTTCAATTAA

Protein Analysis

195

Amino Acids

21.75

Weight (kDa)

7.69

Isoelectric Point (pI)

26.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 30 - 68 5.4e-12 Leucine rich repeat N-terminal domain
LRR_14 PF23598 72 - 188 6.1e-08 Leucine-rich repeat region
LRR_8 PF13855 138 - 181 7.1e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 160
AccB1I GGYRCC 1 cut(s) 260
AccIII TCCGGA 1 cut(s) 271
AciI CCGC 2 cut(s) 204, 361
AcoI YGGCCR 1 cut(s) 351
AcuI CTGAAG 1 cut(s) 67
AfaI GTAC 1 cut(s) 519
AfiI CCNNNNNNNGG 3 cut(s) 220, 278, 360
AgeI ACCGGT 1 cut(s) 128
AgsI TTSAA 5 cut(s) 235, 391, 480, 499, 583
AjnI CCWGG 1 cut(s) 340
AluBI AGCT 3 cut(s) 277, 324, 381
AluI AGCT 3 cut(s) 277, 324, 381
AlwNI CAGNNNCTG 1 cut(s) 19
Aor13HI TCCGGA 1 cut(s) 271
AoxI GGCC 1 cut(s) 351
ApeKI GCWGC 2 cut(s) 65, 68
AsiGI ACCGGT 1 cut(s) 128
AspLEI GCGC 2 cut(s) 73, 309
AspS9I GGNCC 1 cut(s) 426
AsuHPI GGTGA 3 cut(s) 143, 218, 560
AvaII GGWCC 1 cut(s) 426
AxyI CCTNAGG 1 cut(s) 218
BanI GGYRCC 1 cut(s) 260
BbvI GCAGC 2 cut(s) 52, 80
BccI CCATC 1 cut(s) 421
BcgI CGANNNNNNTGC 4 cut(s) 80, 114, 172, 206
BciT130I CCWGG 1 cut(s) 342
BfaI CTAG 2 cut(s) 278, 311
BfmI CTRYAG 1 cut(s) 66
BglII AGATCT 1 cut(s) 147
BisI GCNGC 3 cut(s) 66, 69, 362
BlsI GCNGC 3 cut(s) 67, 70, 363
BmcAI AGTACT 1 cut(s) 519
Bme1390I CCNGG 1 cut(s) 342
Bme18I GGWCC 1 cut(s) 426
BmgT120I GGNCC 1 cut(s) 426
BmiI GGNNCC 2 cut(s) 262, 427
BmrFI CCNGG 1 cut(s) 342
BmrI ACTGGG 1 cut(s) 196
BmsI GCATC 1 cut(s) 294
BmuI ACTGGG 1 cut(s) 196
BsaAI YACGTR 1 cut(s) 122
BsaJI CCNNGG 5 cut(s) 60, 328, 340, 341, 486
BsaWI WCCGGW 2 cut(s) 128, 271
BsaXI ACNNNNNCTCC 2 cut(s) 253, 283
Bsc4I CCNNNNNNNGG 3 cut(s) 220, 278, 360
Bse118I RCCGGY 2 cut(s) 128, 353
Bse1I ACTGG 4 cut(s) 94, 164, 191, 262
Bse21I CCTNAGG 1 cut(s) 218
Bse3DI GCAATG 1 cut(s) 469
BseAI TCCGGA 1 cut(s) 271
BseBI CCWGG 1 cut(s) 342
BseDI CCNNGG 5 cut(s) 60, 328, 340, 341, 486
BseGI GGATG 2 cut(s) 164, 309
BseLI CCNNNNNNNGG 3 cut(s) 220, 278, 360
BseMI GCAATG 1 cut(s) 469
BseMII CTCAG 3 cut(s) 152, 234, 541
BseNI ACTGG 4 cut(s) 94, 164, 191, 262
BseXI GCAGC 2 cut(s) 52, 80
BseYI CCCAGC 1 cut(s) 299
BsgI GTGCAG 1 cut(s) 492
BshFI GGCC 1 cut(s) 353
BshNI GGYRCC 1 cut(s) 260
BshTI ACCGGT 1 cut(s) 128
BsiSI CCGG 3 cut(s) 129, 272, 354
BslI CCNNNNNNNGG 3 cut(s) 220, 278, 360
BsnI GGCC 1 cut(s) 353
Bsp13I TCCGGA 1 cut(s) 271
Bsp143I GATC 2 cut(s) 147, 523
Bsp19I CCATGG 2 cut(s) 60, 328
BspACI CCGC 2 cut(s) 204, 361
BspANI GGCC 1 cut(s) 353
BspCNI CTCAG 3 cut(s) 151, 235, 540
BspEI TCCGGA 1 cut(s) 271
BspLI GGNNCC 2 cut(s) 262, 427
BspMAI CTGCAG 1 cut(s) 70
BspQI GCTCTTC 1 cut(s) 108
BspT107I GGYRCC 1 cut(s) 260
BsrDI GCAATG 1 cut(s) 469
BsrFI RCCGGY 2 cut(s) 128, 353
BsrI ACTGG 4 cut(s) 94, 164, 191, 262
BssAI RCCGGY 2 cut(s) 128, 353
BssECI CCNNGG 5 cut(s) 60, 328, 340, 341, 486
BssMI GATC 2 cut(s) 147, 523
BssT1I CCWWGG 2 cut(s) 60, 328
Bst2UI CCWGG 1 cut(s) 342
Bst4CI ACNGT 1 cut(s) 490
Bst6I CTCTTC 2 cut(s) 108, 584
BstBAI YACGTR 1 cut(s) 122
BstDEI CTNAG 4 cut(s) 138, 218, 243, 527
BstDSI CCRYGG 3 cut(s) 60, 328, 486
BstEII GGTNACC 1 cut(s) 131
BstF5I GGATG 2 cut(s) 164, 309
BstHHI GCGC 2 cut(s) 73, 309
BstKTI GATC 2 cut(s) 150, 526
BstMBI GATC 2 cut(s) 147, 523
BstMWI GCNNNNNNNGC 3 cut(s) 107, 116, 210
BstNI CCWGG 1 cut(s) 342
BstPI GGTNACC 1 cut(s) 131
BstSCI CCNGG 1 cut(s) 340
BstSFI CTRYAG 1 cut(s) 66
BstV1I GCAGC 2 cut(s) 52, 80
BstX2I RGATCY 1 cut(s) 147
BstYI RGATCY 1 cut(s) 147
Bsu36I CCTNAGG 1 cut(s) 218
BsuRI GGCC 1 cut(s) 353
BtgI CCRYGG 3 cut(s) 60, 328, 486
BtsCI GGATG 2 cut(s) 164, 309
BtsIMutI CAGTG 1 cut(s) 255
CaiI CAGNNNCTG 1 cut(s) 19
CfoI GCGC 2 cut(s) 73, 309
Cfr10I RCCGGY 2 cut(s) 128, 353
Cfr13I GGNCC 1 cut(s) 426
Csp6I GTAC 1 cut(s) 518
CspAI ACCGGT 1 cut(s) 128
CviAII CATG 3 cut(s) 61, 329, 417
CviJI RGCY 5 cut(s) 65, 277, 324, 353, 381
CviKI_1 RGCY 5 cut(s) 65, 277, 324, 353, 381
CviQI GTAC 1 cut(s) 518
DdeI CTNAG 4 cut(s) 138, 218, 243, 527
DpnI GATC 2 cut(s) 149, 525
DpnII GATC 2 cut(s) 147, 523
DrdI GACNNNNNNGTC 1 cut(s) 160
DseDI GACNNNNNNGTC 1 cut(s) 160
EaeI YGGCCR 1 cut(s) 351
Eam1104I CTCTTC 2 cut(s) 108, 584
EarI CTCTTC 2 cut(s) 108, 584
Eco130I CCWWGG 2 cut(s) 60, 328
Eco47I GGWCC 1 cut(s) 426
Eco57I CTGAAG 1 cut(s) 67
Eco81I CCTNAGG 1 cut(s) 218
Eco91I GGTNACC 1 cut(s) 131
EcoO109I RGGNCCY 1 cut(s) 426
EcoO65I GGTNACC 1 cut(s) 131
EcoRII CCWGG 1 cut(s) 340
EcoT14I CCWWGG 2 cut(s) 60, 328
ErhI CCWWGG 2 cut(s) 60, 328
FaeI CATG 3 cut(s) 64, 332, 420
FaiI YATR 6 cut(s) 62, 330, 418, 459, 534, 572
FatI CATG 3 cut(s) 60, 328, 416
Fnu4HI GCNGC 3 cut(s) 66, 69, 362
FokI GGATG 2 cut(s) 151, 316
Fsp4HI GCNGC 3 cut(s) 66, 69, 362
FspBI CTAG 2 cut(s) 278, 311
GlaI GCGC 2 cut(s) 72, 308
GluI GCNGC 3 cut(s) 66, 69, 362
GsaI CCCAGC 1 cut(s) 303
HaeIII GGCC 1 cut(s) 353
HapII CCGG 3 cut(s) 129, 272, 354
HhaI GCGC 2 cut(s) 73, 309
Hin1II CATG 3 cut(s) 64, 332, 420
Hin6I GCGC 2 cut(s) 71, 307
HinP1I GCGC 2 cut(s) 71, 307
HinfI GANTC 4 cut(s) 16, 366, 387, 409
HpaII CCGG 3 cut(s) 129, 272, 354
HphI GGTGA 3 cut(s) 143, 218, 560
Hpy166II GTNNAC 2 cut(s) 46, 209
Hpy188I TCNGA 5 cut(s) 141, 175, 244, 386, 530
Hpy188III TCNNGA 2 cut(s) 151, 272
Hpy8I GTNNAC 2 cut(s) 46, 209
Hpy99I CGWCG 1 cut(s) 179
HpyCH4III ACNGT 1 cut(s) 490
HpyCH4IV ACGT 3 cut(s) 121, 177, 371
HpyCH4V TGCA 4 cut(s) 57, 68, 183, 509
HpyF10VI GCNNNNNNNGC 3 cut(s) 107, 116, 210
HpyF3I CTNAG 4 cut(s) 138, 218, 243, 527
HpySE526I ACGT 3 cut(s) 121, 177, 371
Hsp92II CATG 3 cut(s) 64, 332, 420
HspAI GCGC 2 cut(s) 71, 307
Kpn2I TCCGGA 1 cut(s) 271
Kzo9I GATC 2 cut(s) 147, 523
LguI GCTCTTC 1 cut(s) 108
LmnI GCTCC 1 cut(s) 274
Lsp1109I GCAGC 2 cut(s) 52, 80
LweI GCATC 1 cut(s) 294
MaeI CTAG 2 cut(s) 278, 311
MaeII ACGT 3 cut(s) 121, 177, 371
MaeIII GTNAC 2 cut(s) 131, 196
MalI GATC 2 cut(s) 149, 525
MboI GATC 2 cut(s) 147, 523
MboII GAAGA 3 cut(s) 95, 487, 571
MflI RGATCY 1 cut(s) 147
MluCI AATT 4 cut(s) 347, 394, 451, 583
MlyI GAGTC 1 cut(s) 360
MmeI TCCRAC 2 cut(s) 192, 198
MnlI CCTC 4 cut(s) 147, 248, 279, 458
MroI TCCGGA 1 cut(s) 271
MseI TTAA 1 cut(s) 586
MspI CCGG 3 cut(s) 129, 272, 354
MspR9I CCNGG 1 cut(s) 342
MvaI CCWGG 1 cut(s) 342
MwoI GCNNNNNNNGC 3 cut(s) 107, 116, 210
NcoI CCATGG 2 cut(s) 60, 328
NdeII GATC 2 cut(s) 147, 523
NlaIII CATG 3 cut(s) 64, 332, 420
NlaIV GGNNCC 2 cut(s) 262, 427
NmuCI GTSAC 2 cut(s) 131, 196
PasI CCCWGGG 1 cut(s) 341
PciSI GCTCTTC 1 cut(s) 108
PfeI GAWTC 3 cut(s) 16, 387, 409
PinAI ACCGGT 1 cut(s) 128
PkrI GCNGC 3 cut(s) 67, 70, 363
PleI GAGTC 1 cut(s) 360
PpsI GAGTC 1 cut(s) 360
Ppu21I YACGTR 1 cut(s) 122
PpuMI RGGWCCY 1 cut(s) 426
Psp5II RGGWCCY 1 cut(s) 426
Psp6I CCWGG 1 cut(s) 340
PspEI GGTNACC 1 cut(s) 131
PspFI CCCAGC 1 cut(s) 299
PspGI CCWGG 1 cut(s) 340
PspN4I GGNNCC 2 cut(s) 262, 427
PspPI GGNCC 1 cut(s) 426
PspPPI RGGWCCY 1 cut(s) 426
PstI CTGCAG 1 cut(s) 70
PstNI CAGNNNCTG 1 cut(s) 19
PsuI RGATCY 1 cut(s) 147
RsaI GTAC 1 cut(s) 519
RsaNI GTAC 1 cut(s) 518
SapI GCTCTTC 1 cut(s) 108
SaqAI TTAA 1 cut(s) 586
SatI GCNGC 3 cut(s) 66, 69, 362
Sau3AI GATC 2 cut(s) 147, 523
Sau96I GGNCC 1 cut(s) 426
ScaI AGTACT 1 cut(s) 519
SchI GAGTC 1 cut(s) 360
ScrFI CCNGG 1 cut(s) 342
SfaNI GCATC 1 cut(s) 294
SfcI CTRYAG 1 cut(s) 66
SinI GGWCC 1 cut(s) 426
Sse9I AATT 4 cut(s) 347, 394, 451, 583
SsiI CCGC 2 cut(s) 204, 361
SspMI CTAG 2 cut(s) 278, 311
StyD4I CCNGG 1 cut(s) 340
StyI CCWWGG 2 cut(s) 60, 328
TaaI ACNGT 1 cut(s) 490
TaiI ACGT 3 cut(s) 124, 180, 374
TasI AATT 4 cut(s) 347, 394, 451, 583
TatI WGTACW 1 cut(s) 517
TauI GCSGC 1 cut(s) 364
TfiI GAWTC 3 cut(s) 16, 387, 409
Tru1I TTAA 1 cut(s) 586
Tru9I TTAA 1 cut(s) 586
TscAI CASTG 1 cut(s) 262
TseFI GTSAC 2 cut(s) 131, 196
TseI GCWGC 2 cut(s) 65, 68
Tsp45I GTSAC 2 cut(s) 131, 196
TspDTI ATGAA 1 cut(s) 239
TspRI CASTG 1 cut(s) 262
VpaK11BI GGWCC 1 cut(s) 426
XspI CTAG 2 cut(s) 278, 311
ZrmI AGTACT 1 cut(s) 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.