Rh2CG249400

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000229
Physical Location & Seq
Reverse (-)
26334024 .. 26351985
17962 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG249400.1

Sequence Viewer

Length: 891 bp
ATGGCGGCACAAACCAAGCTTAACATCACCACAGACCGGTCTGCTCTTCTTGCCCTCAAAGCCCGTATTACCAGTGACCCTCAAAACATGATCTTCACCAACTGGTCAACCTCTACTCCTATTTGCAACTGGGTTGGGGTCACTTGTGGTGCACGCCATCATCGAGTTGCAGACTTGAACCTCTCTTACTTTGGTCTCACAGGCACCATTCCTCCGGAATTAGGAAACTTACCATTTCTTGTTAATATGGACTTCAGCAATAACAGTTTCCATGGTATATTGCCTCAGGAATTGGATCGCTTGTGTCGGTTGAAGTTTATCAGCTTGGGAAACAACAAGTTCACGGGAGTCATTCCATCATGGTTTGGGTCCTTATTCAAACTTCAAGTATTCAATTTGTTTGGTAATCAATTTTCAGGTTCCGTACCAGCTACAATCTTCAACTTACCTGCTCTGCAAAAAATAGATTTGAGTGATAACCAACTCTCAGAAATTCCAAATGAGATCGGCACTTTGAATCATCTGGAAAAATTGTATGTGCAACATAATGCCTTAAAAGGGCCTATCCCTATGACTATCTTCAACATGTCATCTTTGACTATTGTAACTTTCTATGGTAACAATTTGAATGGTAGAATTCATGACAATATTTGTCAAAATCTTCTGAATATTCAAGCGTTGTATTTGGGTGCCAATCAGTTTAATGGTCCAATTCCTTCCATATTTGGGCAATGCAAACAACTTCTTTCTTTAAACTTGGAGCTTAACTGGTTGACAGGTAGAATATCCAGAGAAATTGGGAATCTAACAATGTTGAAGGAGATCGGCCTTAGTAGTAATAATTTTGAAGACTCAACCTACATAGATATTGAAAAGGAAAATGAGAACTGA

Protein Analysis

296

Amino Acids

33.02

Weight (kDa)

6.3

Isoelectric Point (pI)

27.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 11 - 49 9.4e-11 Leucine rich repeat N-terminal domain
LRR_8 PF13855 103 - 162 5.5e-10 Leucine rich repeat
LRR_14 PF23598 123 - 200 4.6e-08 Leucine-rich repeat region
LRR_8 PF13855 143 - 185 2.2e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 457
AccB1I GGYRCC 2 cut(s) 203, 689
AccIII TCCGGA 1 cut(s) 214
AciI CCGC 1 cut(s) 5
AclWI GGATC 1 cut(s) 303
AcsI RAATTY 2 cut(s) 492, 636
AcuI CTGAAG 1 cut(s) 238
AfaI GTAC 1 cut(s) 426
AfiI CCNNNNNNNGG 4 cut(s) 36, 221, 558, 726
AflIII ACRYGT 1 cut(s) 585
AgeI ACCGGT 1 cut(s) 36
AluBI AGCT 4 cut(s) 19, 324, 431, 763
AluI AGCT 4 cut(s) 19, 324, 431, 763
Alw21I GWGCWC 1 cut(s) 154
Alw26I GTCTC 1 cut(s) 200
Alw44I GTGCAC 1 cut(s) 150
AlwI GGATC 1 cut(s) 303
Aor13HI TCCGGA 1 cut(s) 214
AoxI GGCC 2 cut(s) 560, 826
ApaLI GTGCAC 1 cut(s) 150
ApoI RAATTY 2 cut(s) 492, 636
AsiGI ACCGGT 1 cut(s) 36
AspS9I GGNCC 3 cut(s) 369, 560, 707
AsuHPI GGTGA 2 cut(s) 19, 88
AvaII GGWCC 2 cut(s) 369, 707
AxyI CCTNAGG 1 cut(s) 285
BaeGI GKGCMC 1 cut(s) 154
BanI GGYRCC 2 cut(s) 203, 689
BbsI GAAGAC 1 cut(s) 855
Bbv12I GWGCWC 1 cut(s) 154
BccI CCATC 2 cut(s) 165, 364
BcoDI GTCTC 1 cut(s) 200
BfuAI ACCTGC 1 cut(s) 457
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme18I GGWCC 2 cut(s) 369, 707
BmgT120I GGNCC 3 cut(s) 369, 560, 707
BmiI GGNNCC 4 cut(s) 205, 370, 421, 691
BmrI ACTGGG 1 cut(s) 139
BmuI ACTGGG 1 cut(s) 139
BpiI GAAGAC 1 cut(s) 855
BsaI GGTCTC 1 cut(s) 200
BsaJI CCNNGG 1 cut(s) 271
BsaWI WCCGGW 2 cut(s) 36, 214
BsaXI ACNNNNNCTCC 4 cut(s) 100, 130, 196, 226
Bsc4I CCNNNNNNNGG 4 cut(s) 36, 221, 558, 726
Bse118I RCCGGY 1 cut(s) 36
Bse1I ACTGG 4 cut(s) 72, 107, 134, 773
Bse21I CCTNAGG 1 cut(s) 285
Bse3DI GCAATG 1 cut(s) 737
BseAI TCCGGA 1 cut(s) 214
BseDI CCNNGG 1 cut(s) 271
BseLI CCNNNNNNNGG 4 cut(s) 36, 221, 558, 726
BseMI GCAATG 1 cut(s) 737
BseMII CTCAG 2 cut(s) 299, 501
BseNI ACTGG 4 cut(s) 72, 107, 134, 773
BseSI GKGCMC 1 cut(s) 154
BshFI GGCC 2 cut(s) 562, 828
BshNI GGYRCC 2 cut(s) 203, 689
BshTI ACCGGT 1 cut(s) 36
BsiHKAI GWGCWC 1 cut(s) 154
BsiSI CCGG 2 cut(s) 37, 215
BslI CCNNNNNNNGG 4 cut(s) 36, 221, 558, 726
BsmAI GTCTC 1 cut(s) 200
BsnI GGCC 2 cut(s) 562, 828
Bso31I GGTCTC 1 cut(s) 200
Bsp1286I GDGCHC 1 cut(s) 154
Bsp13I TCCGGA 1 cut(s) 214
Bsp143I GATC 4 cut(s) 90, 295, 504, 822
Bsp19I CCATGG 1 cut(s) 271
BspACI CCGC 1 cut(s) 5
BspANI GGCC 2 cut(s) 562, 828
BspCNI CTCAG 2 cut(s) 298, 500
BspEI TCCGGA 1 cut(s) 214
BspHI TCATGA 1 cut(s) 640
BspLI GGNNCC 4 cut(s) 205, 370, 421, 691
BspMI ACCTGC 1 cut(s) 457
BspPI GGATC 1 cut(s) 303
BspQI GCTCTTC 1 cut(s) 51
BspT107I GGYRCC 2 cut(s) 203, 689
BspTNI GGTCTC 1 cut(s) 200
BsrDI GCAATG 1 cut(s) 737
BsrFI RCCGGY 1 cut(s) 36
BsrI ACTGG 4 cut(s) 72, 107, 134, 773
BssAI RCCGGY 1 cut(s) 36
BssECI CCNNGG 1 cut(s) 271
BssMI GATC 4 cut(s) 90, 295, 504, 822
BssT1I CCWWGG 1 cut(s) 271
Bst4CI ACNGT 1 cut(s) 266
Bst6I CTCTTC 1 cut(s) 51
BstC8I GCNNGC 1 cut(s) 154
BstDEI CTNAG 3 cut(s) 285, 487, 830
BstDSI CCRYGG 1 cut(s) 271
BstKTI GATC 4 cut(s) 93, 298, 507, 825
BstMAI GTCTC 1 cut(s) 200
BstMBI GATC 4 cut(s) 90, 295, 504, 822
BstMWI GCNNNNNNNGC 2 cut(s) 50, 59
BstNSI RCATGY 1 cut(s) 589
BstSLI GKGCMC 1 cut(s) 154
BstV2I GAAGAC 1 cut(s) 855
Bsu36I CCTNAGG 1 cut(s) 285
BsuRI GGCC 2 cut(s) 562, 828
BtgI CCRYGG 1 cut(s) 271
BtsIMutI CAGTG 1 cut(s) 79
BveI ACCTGC 1 cut(s) 457
Cac8I GCNNGC 1 cut(s) 154
CciI TCATGA 1 cut(s) 640
Cfr10I RCCGGY 1 cut(s) 36
Cfr13I GGNCC 3 cut(s) 369, 560, 707
Csp6I GTAC 1 cut(s) 425
CspAI ACCGGT 1 cut(s) 36
CviAII CATG 5 cut(s) 88, 272, 360, 586, 641
CviJI RGCY 7 cut(s) 19, 62, 324, 431, 562, 763, 828
CviKI_1 RGCY 7 cut(s) 19, 62, 324, 431, 562, 763, 828
CviQI GTAC 1 cut(s) 425
DdeI CTNAG 3 cut(s) 285, 487, 830
DpnI GATC 4 cut(s) 92, 297, 506, 824
DpnII GATC 4 cut(s) 90, 295, 504, 822
DraI TTTAAA 1 cut(s) 753
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco130I CCWWGG 1 cut(s) 271
Eco31I GGTCTC 1 cut(s) 200
Eco47I GGWCC 2 cut(s) 369, 707
Eco57I CTGAAG 1 cut(s) 238
Eco81I CCTNAGG 1 cut(s) 285
EcoO109I RGGNCCY 2 cut(s) 369, 560
EcoRI GAATTC 1 cut(s) 636
EcoT14I CCWWGG 1 cut(s) 271
ErhI CCWWGG 1 cut(s) 271
FaeI CATG 5 cut(s) 91, 275, 363, 589, 644
FatI CATG 5 cut(s) 87, 271, 359, 585, 640
Fnu4HI GCNGC 1 cut(s) 6
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 2 cut(s) 562, 828
HapII CCGG 2 cut(s) 37, 215
Hin1II CATG 5 cut(s) 91, 275, 363, 589, 644
HincII GTYRAC 2 cut(s) 108, 774
HindII GTYRAC 2 cut(s) 108, 774
HindIII AAGCTT 1 cut(s) 17
HinfI GANTC 4 cut(s) 348, 517, 802, 851
HpaII CCGG 2 cut(s) 37, 215
HphI GGTGA 2 cut(s) 19, 88
Hpy166II GTNNAC 4 cut(s) 108, 152, 342, 774
Hpy188I TCNGA 2 cut(s) 490, 666
Hpy188III TCNNGA 5 cut(s) 215, 287, 524, 641, 789
Hpy8I GTNNAC 4 cut(s) 108, 152, 342, 774
HpyAV CCTTC 2 cut(s) 726, 811
HpyCH4III ACNGT 1 cut(s) 266
HpyCH4V TGCA 6 cut(s) 126, 152, 170, 457, 541, 735
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 59
HpyF3I CTNAG 3 cut(s) 285, 487, 830
Hsp92II CATG 5 cut(s) 91, 275, 363, 589, 644
Kpn2I TCCGGA 1 cut(s) 214
Kzo9I GATC 4 cut(s) 90, 295, 504, 822
LguI GCTCTTC 1 cut(s) 51
LmnI GCTCC 1 cut(s) 760
MaeIII GTNAC 4 cut(s) 74, 139, 604, 617
MalI GATC 4 cut(s) 92, 297, 506, 824
MboI GATC 4 cut(s) 90, 295, 504, 822
MboII GAAGA 6 cut(s) 38, 85, 430, 571, 653, 860
MhlI GDGCHC 1 cut(s) 154
MlyI GAGTC 2 cut(s) 357, 845
MnlI CCTC 6 cut(s) 65, 90, 121, 191, 222, 294
MroI TCCGGA 1 cut(s) 214
MseI TTAA 6 cut(s) 21, 243, 554, 702, 752, 765
MspI CCGG 2 cut(s) 37, 215
MwoI GCNNNNNNNGC 2 cut(s) 50, 59
NcoI CCATGG 1 cut(s) 271
NdeII GATC 4 cut(s) 90, 295, 504, 822
NlaIII CATG 5 cut(s) 91, 275, 363, 589, 644
NlaIV GGNNCC 4 cut(s) 205, 370, 421, 691
NmuCI GTSAC 2 cut(s) 74, 139
NspI RCATGY 1 cut(s) 589
PagI TCATGA 1 cut(s) 640
PciI ACATGT 1 cut(s) 585
PciSI GCTCTTC 1 cut(s) 51
PcsI WCGNNNNNNNCGW 1 cut(s) 160
PfeI GAWTC 2 cut(s) 517, 802
PinAI ACCGGT 1 cut(s) 36
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 2 cut(s) 356, 845
PpsI GAGTC 2 cut(s) 356, 845
PpuMI RGGWCCY 1 cut(s) 369
PscI ACATGT 1 cut(s) 585
Psp5II RGGWCCY 1 cut(s) 369
PspN4I GGNNCC 4 cut(s) 205, 370, 421, 691
PspPI GGNCC 3 cut(s) 369, 560, 707
PspPPI RGGWCCY 1 cut(s) 369
PsrI GAACNNNNNNTAC 2 cut(s) 170, 202
RsaI GTAC 1 cut(s) 426
RsaNI GTAC 1 cut(s) 425
SapI GCTCTTC 1 cut(s) 51
SaqAI TTAA 6 cut(s) 21, 243, 554, 702, 752, 765
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 4 cut(s) 90, 295, 504, 822
Sau96I GGNCC 3 cut(s) 369, 560, 707
SchI GAGTC 2 cut(s) 357, 845
SduI GDGCHC 1 cut(s) 154
SinI GGWCC 2 cut(s) 369, 707
SsiI CCGC 1 cut(s) 5
SspI AATATT 2 cut(s) 649, 670
StyI CCWWGG 1 cut(s) 271
TaaI ACNGT 1 cut(s) 266
TaqI TCGA 1 cut(s) 163
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 2 cut(s) 517, 802
Tru1I TTAA 6 cut(s) 21, 243, 554, 702, 752, 765
Tru9I TTAA 6 cut(s) 21, 243, 554, 702, 752, 765
TscAI CASTG 1 cut(s) 79
TseFI GTSAC 2 cut(s) 74, 139
Tsp45I GTSAC 2 cut(s) 74, 139
TspDTI ATGAA 1 cut(s) 629
TspGWI ACGGA 1 cut(s) 412
TspRI CASTG 1 cut(s) 79
VneI GTGCAC 1 cut(s) 150
VpaK11BI GGWCC 2 cut(s) 369, 707
XapI RAATTY 2 cut(s) 492, 636
XceI RCATGY 1 cut(s) 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.