Rh2CG250100

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Reverse (-)
26470776 .. 26471661
886 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG250100.1

Sequence Viewer

Length: 408 bp
ATGTGTGTTGATTTTTCAGAAATTCCAAATGAGATTGGCACTTTGAATCATCTGGAAAAATTGTATGTGCAAGACAATGCCTTAAAAGGGCCTATCCCTATGACTATCTTCAACATCTCATCTTTGACTATTGTAACTTTCTATGGTAACAATTTGAACGGTATAATTCCTGACAATATTTGTCAAAATCTTTCAAATATTCAAGGGTTGAATTTGGGTGCCAATCAATTTAATGGTCCACTTCCTTCCATATTTGGGCAATGCAAACAACTTCTTCGATTAGACTTGGAGGATAACAGCTTGACAGGTAAAATATCCAGAGAAATTGGGAACCTAACAATGTTGAAGGAGATCTACCTTGGTGGTAATAATTTTGAAGGTATGACTTCCATCAATTTTGTTGATTAA

Protein Analysis

135

Amino Acids

14.88

Weight (kDa)

4.55

Isoelectric Point (pI)

20.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 66 - 125 6.8e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 218
AcsI RAATTY 2 cut(s) 21, 211
AfiI CCNNNNNNNGG 2 cut(s) 87, 255
AgsI TTSAA 8 cut(s) 46, 112, 157, 195, 203, 211, 346, 377
AluBI AGCT 1 cut(s) 300
AluI AGCT 1 cut(s) 300
AoxI GGCC 1 cut(s) 89
ApoI RAATTY 2 cut(s) 21, 211
AspS9I GGNCC 2 cut(s) 89, 236
AvaII GGWCC 1 cut(s) 236
BanI GGYRCC 1 cut(s) 218
BarI GAAGNNNNNNTAC 2 cut(s) 338, 370
BccI CCATC 1 cut(s) 398
BglII AGATCT 1 cut(s) 351
Bme18I GGWCC 1 cut(s) 236
BmgT120I GGNCC 2 cut(s) 89, 236
BmiI GGNNCC 2 cut(s) 220, 332
BsaJI CCNNGG 1 cut(s) 358
Bsc4I CCNNNNNNNGG 2 cut(s) 87, 255
Bse3DI GCAATG 1 cut(s) 266
BseDI CCNNGG 1 cut(s) 358
BseLI CCNNNNNNNGG 2 cut(s) 87, 255
BseMI GCAATG 1 cut(s) 266
BshFI GGCC 1 cut(s) 91
BshNI GGYRCC 1 cut(s) 218
BslI CCNNNNNNNGG 2 cut(s) 87, 255
BsnI GGCC 1 cut(s) 91
Bsp143I GATC 1 cut(s) 351
BspANI GGCC 1 cut(s) 91
BspLI GGNNCC 2 cut(s) 220, 332
BspT107I GGYRCC 1 cut(s) 218
BsrDI GCAATG 1 cut(s) 266
BssECI CCNNGG 1 cut(s) 358
BssMI GATC 1 cut(s) 351
BssT1I CCWWGG 1 cut(s) 358
Bst4CI ACNGT 1 cut(s) 161
BstKTI GATC 1 cut(s) 354
BstMBI GATC 1 cut(s) 351
BstX2I RGATCY 1 cut(s) 351
BstYI RGATCY 1 cut(s) 351
BsuRI GGCC 1 cut(s) 91
Cfr13I GGNCC 2 cut(s) 89, 236
CviJI RGCY 2 cut(s) 91, 300
CviKI_1 RGCY 2 cut(s) 91, 300
DpnI GATC 1 cut(s) 353
DpnII GATC 1 cut(s) 351
Eco130I CCWWGG 1 cut(s) 358
Eco47I GGWCC 1 cut(s) 236
EcoO109I RGGNCCY 1 cut(s) 89
EcoT14I CCWWGG 1 cut(s) 358
ErhI CCWWGG 1 cut(s) 358
FaiI YATR 6 cut(s) 66, 101, 144, 164, 251, 383
HaeIII GGCC 1 cut(s) 91
HinfI GANTC 1 cut(s) 46
Hpy166II GTNNAC 1 cut(s) 239
Hpy188I TCNGA 1 cut(s) 19
Hpy188III TCNNGA 3 cut(s) 53, 170, 318
Hpy8I GTNNAC 1 cut(s) 239
HpyAV CCTTC 3 cut(s) 255, 340, 371
HpyCH4III ACNGT 1 cut(s) 161
HpyCH4V TGCA 2 cut(s) 70, 264
Kzo9I GATC 1 cut(s) 351
LpnPI CCDG 4 cut(s) 38, 183, 291, 331
MaeIII GTNAC 2 cut(s) 133, 146
MalI GATC 1 cut(s) 353
MboI GATC 1 cut(s) 351
MboII GAAGA 2 cut(s) 100, 266
MflI RGATCY 1 cut(s) 351
MluCI AATT 9 cut(s) 21, 59, 151, 165, 211, 227, 324, 370, 394
MnlI CCTC 1 cut(s) 283
MseI TTAA 3 cut(s) 83, 231, 406
NdeII GATC 1 cut(s) 351
NlaIV GGNNCC 2 cut(s) 220, 332
PfeI GAWTC 1 cut(s) 46
PspN4I GGNNCC 2 cut(s) 220, 332
PspPI GGNCC 2 cut(s) 89, 236
PsuI RGATCY 1 cut(s) 351
SaqAI TTAA 3 cut(s) 83, 231, 406
Sau3AI GATC 1 cut(s) 351
Sau96I GGNCC 2 cut(s) 89, 236
SetI ASST 5 cut(s) 302, 310, 336, 360, 382
SgeI CNNG 9 cut(s) 65, 83, 182, 215, 298, 313, 318, 330, 371
SinI GGWCC 1 cut(s) 236
Sse9I AATT 9 cut(s) 21, 59, 151, 165, 211, 227, 324, 370, 394
SspI AATATT 2 cut(s) 178, 199
StyI CCWWGG 1 cut(s) 358
TaaI ACNGT 1 cut(s) 161
TaqI TCGA 1 cut(s) 277
TasI AATT 9 cut(s) 21, 59, 151, 165, 211, 227, 324, 370, 394
TfiI GAWTC 1 cut(s) 46
Tru1I TTAA 3 cut(s) 83, 231, 406
Tru9I TTAA 3 cut(s) 83, 231, 406
VpaK11BI GGWCC 1 cut(s) 236
XapI RAATTY 2 cut(s) 21, 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.