Rw5G007860

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
8340472 .. 8344242
3771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G007860.1

Sequence Viewer

Length: 759 bp
ATGCAGAGAACTACTCGGTTGCTCTTGTCGATCATCTTGTTGCTGTTGCGGTACTACTGTTGTATGGCTAGCTTAACCATTGCAGAACACACTAAAAATCTCACCACAGACCAGTCTGCTATTCTTGCTCTCAAATCCCACATCAGTGACCCCCACAACATGATCTACACCAACTGGTCGACCAAGACATCTGTTTGCAACTGGGTTGGCGTTACTTGCGCTGCTCGCCACCACAGAGTCGTGGCTTTGAACCTCTCTTTCATGGGTCTCACAGGCACCCTTCCTCCCGAGCTAGGTAACCTGTCATTTCTTGTTGAGTTTCAGATCAGGAATAACAATGCATATTTTTCAAGTAACTATCTCTCAGGGACTATACCAAGAAGCATTGGGGGTCTTGAGGATTTGTTTAATCTCTCCTTGTCAAATAATAACTTCGAAGGCTCTATCCCCACATCATTTGGCAACTTGCCAAGCCTAGAATTCCTGGATTTGTCCAAAAACAATTTGTCTGGAGTGATTCCAAAGTCTCTGGAAGCACTATCACATCTCGAGTATCTGAATTTATCTTTCAACATACTCCAAGGAGAAATTCCAACAGGTGGGCCTTTTCAAAATTTCTTTGCTCAATCATTCATCTCAAATGGTGAACTCTGTGGTGCACCTCGATTGCATGTTCCACTATGTAAAAGAAAAGCTGAGAAATCCAATTTGAAATATATACATTATTCCAGGGGTCTAGCTTGTCAGCAGTGCTTCTAG

Protein Analysis

252

Amino Acids

28.01

Weight (kDa)

8.62

Isoelectric Point (pI)

32.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 36 - 73 1.4e-09 Leucine rich repeat N-terminal domain
LRR_14 PF23598 84 - 191 7.2e-08 Leucine-rich repeat region
LRR_8 PF13855 150 - 191 9.1e-09 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 275
AccB7I CCANNNNNTGG 1 cut(s) 599
AccI GTMKAC 1 cut(s) 179
AciI CCGC 1 cut(s) 49
AcsI RAATTY 4 cut(s) 479, 559, 588, 613
AfaI GTAC 1 cut(s) 53
AfiI CCNNNNNNNGG 2 cut(s) 293, 599
AgsI TTSAA 5 cut(s) 250, 351, 571, 611, 712
AjnI CCWGG 2 cut(s) 483, 728
AjuI GAANNNNNNNTTGG 2 cut(s) 573, 605
AleI CACNNNNGTG 1 cut(s) 144
AluBI AGCT 4 cut(s) 72, 292, 695, 740
AluI AGCT 4 cut(s) 72, 292, 695, 740
Alw21I GWGCWC 1 cut(s) 661
Alw26I GTCTC 2 cut(s) 272, 531
Alw44I GTGCAC 1 cut(s) 657
Ama87I CYCGRG 2 cut(s) 287, 548
AoxI GGCC 1 cut(s) 602
ApaLI GTGCAC 1 cut(s) 657
ApeKI GCWGC 1 cut(s) 221
ApoI RAATTY 4 cut(s) 479, 559, 588, 613
AspLEI GCGC 1 cut(s) 221
AspS9I GGNCC 1 cut(s) 602
AsuHPI GGTGA 2 cut(s) 94, 656
AsuII TTCGAA 1 cut(s) 435
AsuNHI GCTAGC 1 cut(s) 68
AvaI CYCGRG 2 cut(s) 287, 548
BaeGI GKGCMC 1 cut(s) 661
BaeI ACNNNNGTAYC 2 cut(s) 43, 76
BanI GGYRCC 1 cut(s) 275
Bbv12I GWGCWC 1 cut(s) 661
BbvI GCAGC 1 cut(s) 208
BciT130I CCWGG 2 cut(s) 485, 730
BcoDI GTCTC 2 cut(s) 272, 531
BfaI CTAG 5 cut(s) 69, 293, 476, 737, 757
BisI GCNGC 1 cut(s) 222
BlsI GCNGC 1 cut(s) 223
Bme1390I CCNGG 2 cut(s) 485, 730
BmeT110I CYCGRG 2 cut(s) 287, 548
BmgT120I GGNCC 1 cut(s) 602
BmiI GGNNCC 1 cut(s) 277
BmrFI CCNGG 2 cut(s) 485, 730
BmrI ACTGGG 1 cut(s) 211
BmtI GCTAGC 1 cut(s) 72
BmuI ACTGGG 1 cut(s) 211
BplI GAGNNNNNCTC 1 cut(s) 30
BpmI CTGGAG 1 cut(s) 531
Bpu14I TTCGAA 1 cut(s) 435
BpuEI CTTGAG 1 cut(s) 416
BsaI GGTCTC 1 cut(s) 272
BsaJI CCNNGG 2 cut(s) 580, 729
BsaXI ACNNNNNCTCC 2 cut(s) 268, 298
Bsc4I CCNNNNNNNGG 2 cut(s) 293, 599
Bse1I ACTGG 3 cut(s) 112, 179, 206
Bse3DI GCAATG 1 cut(s) 78
BseBI CCWGG 2 cut(s) 485, 730
BseDI CCNNGG 2 cut(s) 580, 729
BseLI CCNNNNNNNGG 2 cut(s) 293, 599
BseMI GCAATG 1 cut(s) 78
BseMII CTCAG 2 cut(s) 378, 687
BseNI ACTGG 3 cut(s) 112, 179, 206
BseSI GKGCMC 1 cut(s) 661
BseXI GCAGC 1 cut(s) 208
BshFI GGCC 1 cut(s) 604
BshNI GGYRCC 1 cut(s) 275
BsiHKAI GWGCWC 1 cut(s) 661
BsiHKCI CYCGRG 2 cut(s) 287, 548
BslFI GGGAC 1 cut(s) 382
BslI CCNNNNNNNGG 2 cut(s) 293, 599
BsmAI GTCTC 2 cut(s) 272, 531
BsmFI GGGAC 1 cut(s) 382
BsnI GGCC 1 cut(s) 604
Bso31I GGTCTC 1 cut(s) 272
BsoBI CYCGRG 2 cut(s) 287, 548
Bsp119I TTCGAA 1 cut(s) 435
Bsp1286I GDGCHC 1 cut(s) 661
Bsp143I GATC 3 cut(s) 30, 162, 324
BspACI CCGC 1 cut(s) 49
BspANI GGCC 1 cut(s) 604
BspCNI CTCAG 2 cut(s) 377, 688
BspLI GGNNCC 1 cut(s) 277
BspOI GCTAGC 1 cut(s) 72
BspT104I TTCGAA 1 cut(s) 435
BspT107I GGYRCC 1 cut(s) 275
BspTNI GGTCTC 1 cut(s) 272
BsrDI GCAATG 1 cut(s) 78
BsrI ACTGG 3 cut(s) 112, 179, 206
BssECI CCNNGG 2 cut(s) 580, 729
BssMI GATC 3 cut(s) 30, 162, 324
BssT1I CCWWGG 1 cut(s) 580
Bst2UI CCWGG 2 cut(s) 485, 730
Bst4CI ACNGT 1 cut(s) 59
BstBI TTCGAA 1 cut(s) 435
BstC8I GCNNGC 2 cut(s) 70, 226
BstDEI CTNAG 2 cut(s) 364, 696
BstEII GGTNACC 1 cut(s) 296
BstHHI GCGC 1 cut(s) 221
BstKTI GATC 3 cut(s) 33, 165, 327
BstMAI GTCTC 2 cut(s) 272, 531
BstMBI GATC 3 cut(s) 30, 162, 324
BstMWI GCNNNNNNNGC 3 cut(s) 125, 216, 225
BstNI CCWGG 2 cut(s) 485, 730
BstNSI RCATGY 1 cut(s) 674
BstPI GGTNACC 1 cut(s) 296
BstSCI CCNGG 2 cut(s) 483, 728
BstSLI GKGCMC 1 cut(s) 661
BstV1I GCAGC 1 cut(s) 208
BsuRI GGCC 1 cut(s) 604
BtsI GCAGTG 1 cut(s) 755
BtsIMutI CAGTG 2 cut(s) 151, 755
Cac8I GCNNGC 2 cut(s) 70, 226
CfoI GCGC 1 cut(s) 221
Cfr13I GGNCC 1 cut(s) 602
Csp6I GTAC 1 cut(s) 52
CspCI CAANNNNNGTGG 2 cut(s) 439, 474
CviAII CATG 3 cut(s) 160, 262, 671
CviJI RGCY 9 cut(s) 68, 72, 245, 292, 441, 474, 604, 695, 740
CviKI_1 RGCY 9 cut(s) 68, 72, 245, 292, 441, 474, 604, 695, 740
CviQI GTAC 1 cut(s) 52
DdeI CTNAG 2 cut(s) 364, 696
DpnI GATC 3 cut(s) 32, 164, 326
DpnII GATC 3 cut(s) 30, 162, 324
Eco130I CCWWGG 1 cut(s) 580
Eco31I GGTCTC 1 cut(s) 272
Eco88I CYCGRG 2 cut(s) 287, 548
Eco91I GGTNACC 1 cut(s) 296
EcoO65I GGTNACC 1 cut(s) 296
EcoRI GAATTC 1 cut(s) 479
EcoRII CCWGG 2 cut(s) 483, 728
EcoT14I CCWWGG 1 cut(s) 580
EcoT22I ATGCAT 1 cut(s) 343
ErhI CCWWGG 1 cut(s) 580
FaeI CATG 3 cut(s) 163, 265, 674
FaqI GGGAC 1 cut(s) 382
FatI CATG 3 cut(s) 159, 261, 670
FblI GTMKAC 1 cut(s) 179
Fnu4HI GCNGC 1 cut(s) 222
Fsp4HI GCNGC 1 cut(s) 222
FspBI CTAG 5 cut(s) 69, 293, 476, 737, 757
GlaI GCGC 1 cut(s) 220
GluI GCNGC 1 cut(s) 222
GsuI CTGGAG 1 cut(s) 531
HaeIII GGCC 1 cut(s) 604
HhaI GCGC 1 cut(s) 221
Hin1II CATG 3 cut(s) 163, 265, 674
Hin6I GCGC 1 cut(s) 219
HinP1I GCGC 1 cut(s) 219
HincII GTYRAC 1 cut(s) 180
HindII GTYRAC 1 cut(s) 180
HinfI GANTC 2 cut(s) 237, 517
HphI GGTGA 2 cut(s) 94, 656
Hpy166II GTNNAC 3 cut(s) 180, 647, 659
Hpy188I TCNGA 2 cut(s) 324, 558
Hpy188III TCNNGA 6 cut(s) 287, 328, 395, 510, 530, 548
Hpy8I GTNNAC 3 cut(s) 180, 647, 659
HpyAV CCTTC 2 cut(s) 290, 431
HpyCH4III ACNGT 1 cut(s) 59
HpyCH4V TGCA 6 cut(s) 4, 83, 198, 341, 659, 670
HpyF10VI GCNNNNNNNGC 3 cut(s) 125, 216, 225
HpyF3I CTNAG 2 cut(s) 364, 696
Hsp92II CATG 3 cut(s) 163, 265, 674
HspAI GCGC 1 cut(s) 219
Kzo9I GATC 3 cut(s) 30, 162, 324
Lsp1109I GCAGC 1 cut(s) 208
MaeI CTAG 5 cut(s) 69, 293, 476, 737, 757
MaeIII GTNAC 4 cut(s) 146, 211, 296, 353
MalI GATC 3 cut(s) 32, 164, 326
MboI GATC 3 cut(s) 30, 162, 324
MhlI GDGCHC 1 cut(s) 661
MluCI AATT 6 cut(s) 479, 502, 559, 588, 613, 706
MlyI GAGTC 1 cut(s) 246
MmeI TCCRAC 1 cut(s) 617
MnlI CCTC 4 cut(s) 263, 294, 391, 672
Mph1103I ATGCAT 1 cut(s) 343
MseI TTAA 2 cut(s) 74, 408
MslI CAYNNNNRTG 1 cut(s) 144
MspR9I CCNGG 2 cut(s) 485, 730
MvaI CCWGG 2 cut(s) 485, 730
MwoI GCNNNNNNNGC 3 cut(s) 125, 216, 225
NdeII GATC 3 cut(s) 30, 162, 324
NheI GCTAGC 1 cut(s) 68
NlaIII CATG 3 cut(s) 163, 265, 674
NlaIV GGNNCC 1 cut(s) 277
NmuCI GTSAC 1 cut(s) 146
NsiI ATGCAT 1 cut(s) 343
NspI RCATGY 1 cut(s) 674
NspV TTCGAA 1 cut(s) 435
OliI CACNNNNGTG 1 cut(s) 144
PaeR7I CTCGAG 1 cut(s) 548
PfeI GAWTC 1 cut(s) 517
PflMI CCANNNNNTGG 1 cut(s) 599
PfoI TCCNGGA 1 cut(s) 483
PkrI GCNGC 1 cut(s) 223
PleI GAGTC 1 cut(s) 245
PpsI GAGTC 1 cut(s) 245
Psp6I CCWGG 2 cut(s) 483, 728
PspEI GGTNACC 1 cut(s) 296
PspGI CCWGG 2 cut(s) 483, 728
PspN4I GGNNCC 1 cut(s) 277
PspPI GGNCC 1 cut(s) 602
RsaI GTAC 1 cut(s) 53
RsaNI GTAC 1 cut(s) 52
RseI CAYNNNNRTG 1 cut(s) 144
SalI GTCGAC 1 cut(s) 178
SaqAI TTAA 2 cut(s) 74, 408
SatI GCNGC 1 cut(s) 222
Sau3AI GATC 3 cut(s) 30, 162, 324
Sau96I GGNCC 1 cut(s) 602
SchI GAGTC 1 cut(s) 246
ScrFI CCNGG 2 cut(s) 485, 730
SduI GDGCHC 1 cut(s) 661
SetI ASST 9 cut(s) 74, 255, 294, 298, 303, 601, 664, 697, 742
Sfr274I CTCGAG 1 cut(s) 548
SfuI TTCGAA 1 cut(s) 435
SlaI CTCGAG 1 cut(s) 548
SmiMI CAYNNNNRTG 1 cut(s) 144
SmlI CTYRAG 2 cut(s) 395, 548
SmoI CTYRAG 2 cut(s) 395, 548
Sse9I AATT 6 cut(s) 479, 502, 559, 588, 613, 706
SsiI CCGC 1 cut(s) 49
SspMI CTAG 5 cut(s) 69, 293, 476, 737, 757
StyD4I CCNGG 2 cut(s) 483, 728
StyI CCWWGG 1 cut(s) 580
TaaI ACNGT 1 cut(s) 59
TaqI TCGA 5 cut(s) 29, 179, 435, 549, 664
TasI AATT 6 cut(s) 479, 502, 559, 588, 613, 706
TfiI GAWTC 1 cut(s) 517
Tru1I TTAA 2 cut(s) 74, 408
Tru9I TTAA 2 cut(s) 74, 408
TscAI CASTG 2 cut(s) 151, 755
TseFI GTSAC 1 cut(s) 146
TseI GCWGC 1 cut(s) 221
Tsp45I GTSAC 1 cut(s) 146
TspDTI ATGAA 2 cut(s) 250, 622
TspRI CASTG 2 cut(s) 151, 755
Van91I CCANNNNNTGG 1 cut(s) 599
VneI GTGCAC 1 cut(s) 657
XapI RAATTY 4 cut(s) 479, 559, 588, 613
XceI RCATGY 1 cut(s) 674
XhoI CTCGAG 1 cut(s) 548
XmiI GTMKAC 1 cut(s) 179
XspI CTAG 5 cut(s) 69, 293, 476, 737, 757
Zsp2I ATGCAT 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.