Prupe.6G160500_v2.0.a1

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000229
Physical Location & Seq
Reverse (-)
14857808 .. 14859503
1696 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G160500.1

Sequence Viewer

Length: 795 bp
ATGGAGAGAAGTCGTTTCCTCTTGTCAATAACGTTGTTGCTGCTGCAATACAGTTCTATAGTTACAGGTGCAGCAAAAACCAACATCACCACTGACCAGTCTGCTCTTCTTGCTATGAGATCCCATATCACTAGTGACCCTCACAACATCTTGGTCAACTGGTCAACCTCCACCTCCGTTTGCAACTGGGTTGGTGTTACTTGTGGTGCTCGTCACCTCAGAGTAGTATCGTTGAATCTCTCCTACATGGTTTTCACTGGCACCATTCCACCACACTTGGGTAATCTCTCCTTCCTTGTTGCACTAAGCTTCAACAATAATAGCTTTTATGGTACTTTGCCCCATGAATTGTCTTATTTACGTCGCCTGAAGTTTATTAGCTTAGGATTCAATAATTTTATGGGATCCATTCCATCGTGGTTTGGGTCCTTCCCCAAACTTCAAAGATTGGATTTGTATGGAAATCAGTTTTCAGGTACTGTACCTTCAACTATCTTCAACTTGTCTACATTGCAAGACATAGATCTAGGCGCTAACAAACTATCAGGTGCGATACCCAGAGAAATAGGGAACTTAACAATGTTGAAGGGGATATACCTTGACTCCAACAATTTCAATGAAATTCCAAAAGAGATCGGCCTTTTAGATCAGGTGGAGATATTGTATGTGAGCTTAAATGCCCTAAAAGGCCCTGTTCCTGTGGCTGTTTTCAACATGTCTTCTTTGACTATGTTGACTCTATATGGAAACAGCTTGAGTGGTGGTCTTCTAGACAATATATGTACATCTTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

265

Amino Acids

28.92

Weight (kDa)

8.44

Isoelectric Point (pI)

39.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 260
AccI GTMKAC 1 cut(s) 506
AclI AACGTT 1 cut(s) 32
AclWI GGATC 3 cut(s) 114, 399, 412
AcsI RAATTY 1 cut(s) 621
AcuI CTGAAG 1 cut(s) 389
AfaI GTAC 4 cut(s) 334, 478, 483, 784
AfiI CCNNNNNNNGG 1 cut(s) 278
AflIII ACRYGT 1 cut(s) 714
AgsI TTSAA 9 cut(s) 235, 313, 391, 443, 489, 499, 586, 616, 712
AhlI ACTAGT 1 cut(s) 131
AluBI AGCT 5 cut(s) 309, 324, 381, 672, 753
AluI AGCT 5 cut(s) 309, 324, 381, 672, 753
Alw21I GWGCWC 1 cut(s) 211
AlwI GGATC 3 cut(s) 114, 399, 412
AlwNI CAGNNNCTG 1 cut(s) 479
AoxI GGCC 2 cut(s) 637, 688
ApeKI GCWGC 3 cut(s) 40, 43, 71
ApoI RAATTY 1 cut(s) 621
AspLEI GCGC 1 cut(s) 533
AspS9I GGNCC 2 cut(s) 426, 689
AsuHPI GGTGA 2 cut(s) 79, 206
AvaII GGWCC 1 cut(s) 426
BamHI GGATCC 1 cut(s) 404
BanI GGYRCC 1 cut(s) 260
BarI GAAGNNNNNNTAC 4 cut(s) 469, 501, 578, 610
BbsI GAAGAC 2 cut(s) 711, 758
Bbv12I GWGCWC 1 cut(s) 211
BbvI GCAGC 3 cut(s) 27, 30, 83
BccI CCATC 1 cut(s) 421
BcuI ACTAGT 1 cut(s) 131
BfaI CTAG 4 cut(s) 132, 527, 770, 793
BfmI CTRYAG 1 cut(s) 57
BfoI RGCGCY 1 cut(s) 534
BglII AGATCT 1 cut(s) 523
BisI GCNGC 3 cut(s) 41, 44, 72
BlsI GCNGC 3 cut(s) 42, 45, 73
Bme18I GGWCC 1 cut(s) 426
BmgT120I GGNCC 2 cut(s) 426, 689
BmiI GGNNCC 3 cut(s) 262, 406, 427
BmrI ACTGGG 1 cut(s) 196
BmuI ACTGGG 1 cut(s) 196
BpiI GAAGAC 2 cut(s) 711, 758
Bpu10I CCTNAGC 1 cut(s) 382
BpuEI CTTGAG 1 cut(s) 775
BsaXI ACNNNNNCTCC 4 cut(s) 587, 617, 647, 677
Bsc4I CCNNNNNNNGG 1 cut(s) 278
Bse1I ACTGG 4 cut(s) 97, 164, 191, 262
Bse3DI GCAATG 1 cut(s) 509
BseLI CCNNNNNNNGG 1 cut(s) 278
BseMI GCAATG 1 cut(s) 509
BseMII CTCAG 1 cut(s) 232
BseNI ACTGG 4 cut(s) 97, 164, 191, 262
BseXI GCAGC 3 cut(s) 27, 30, 83
BsgI GTGCAG 1 cut(s) 90
BshFI GGCC 2 cut(s) 639, 690
BshNI GGYRCC 1 cut(s) 260
BsiHKAI GWGCWC 1 cut(s) 211
BslI CCNNNNNNNGG 1 cut(s) 278
BsnI GGCC 2 cut(s) 639, 690
Bsp1286I GDGCHC 1 cut(s) 211
Bsp1407I TGTACA 1 cut(s) 782
Bsp143I GATC 5 cut(s) 119, 404, 523, 633, 646
BspANI GGCC 2 cut(s) 639, 690
BspCNI CTCAG 1 cut(s) 231
BspLI GGNNCC 3 cut(s) 262, 406, 427
BspPI GGATC 3 cut(s) 114, 399, 412
BspQI GCTCTTC 1 cut(s) 111
BspT107I GGYRCC 1 cut(s) 260
BsrDI GCAATG 1 cut(s) 509
BsrGI TGTACA 1 cut(s) 782
BsrI ACTGG 4 cut(s) 97, 164, 191, 262
BssMI GATC 5 cut(s) 119, 404, 523, 633, 646
Bst4CI ACNGT 2 cut(s) 53, 481
Bst6I CTCTTC 1 cut(s) 111
BstAUI TGTACA 1 cut(s) 782
BstDEI CTNAG 3 cut(s) 218, 305, 382
BstH2I RGCGCY 1 cut(s) 534
BstHHI GCGC 1 cut(s) 533
BstKTI GATC 5 cut(s) 122, 407, 526, 636, 649
BstMBI GATC 5 cut(s) 119, 404, 523, 633, 646
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNSI RCATGY 1 cut(s) 718
BstSFI CTRYAG 1 cut(s) 57
BstV1I GCAGC 3 cut(s) 27, 30, 83
BstV2I GAAGAC 2 cut(s) 711, 758
BstX2I RGATCY 3 cut(s) 119, 404, 523
BstYI RGATCY 3 cut(s) 119, 404, 523
BsuRI GGCC 2 cut(s) 639, 690
BtsIMutI CAGTG 2 cut(s) 90, 255
CaiI CAGNNNCTG 1 cut(s) 479
CfoI GCGC 1 cut(s) 533
Cfr13I GGNCC 2 cut(s) 426, 689
Csp6I GTAC 4 cut(s) 333, 477, 482, 783
CspCI CAANNNNNGTGG 2 cut(s) 258, 293
CviAII CATG 3 cut(s) 247, 344, 715
CviJI RGCY 8 cut(s) 309, 324, 381, 639, 672, 690, 704, 753
CviKI_1 RGCY 8 cut(s) 309, 324, 381, 639, 672, 690, 704, 753
CviQI GTAC 4 cut(s) 333, 477, 482, 783
DdeI CTNAG 3 cut(s) 218, 305, 382
DpnI GATC 5 cut(s) 121, 406, 525, 635, 648
DpnII GATC 5 cut(s) 119, 404, 523, 633, 646
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
Eco47I GGWCC 1 cut(s) 426
Eco57I CTGAAG 1 cut(s) 389
EcoO109I RGGNCCY 2 cut(s) 426, 689
FaeI CATG 3 cut(s) 250, 347, 718
FatI CATG 3 cut(s) 246, 343, 714
FblI GTMKAC 1 cut(s) 506
Fnu4HI GCNGC 3 cut(s) 41, 44, 72
Fsp4HI GCNGC 3 cut(s) 41, 44, 72
FspBI CTAG 4 cut(s) 132, 527, 770, 793
GlaI GCGC 1 cut(s) 532
GluI GCNGC 3 cut(s) 41, 44, 72
HaeII RGCGCY 1 cut(s) 534
HaeIII GGCC 2 cut(s) 639, 690
HhaI GCGC 1 cut(s) 533
Hin1II CATG 3 cut(s) 250, 347, 718
Hin6I GCGC 1 cut(s) 531
HinP1I GCGC 1 cut(s) 531
HincII GTYRAC 3 cut(s) 157, 165, 735
HindII GTYRAC 3 cut(s) 157, 165, 735
HindIII AAGCTT 1 cut(s) 307
HinfI GANTC 4 cut(s) 235, 387, 602, 736
HphI GGTGA 2 cut(s) 79, 206
Hpy166II GTNNAC 4 cut(s) 157, 165, 507, 735
Hpy188I TCNGA 1 cut(s) 221
Hpy188III TCNNGA 1 cut(s) 770
Hpy8I GTNNAC 4 cut(s) 157, 165, 507, 735
Hpy99I CGWCG 1 cut(s) 366
HpyAV CCTTC 4 cut(s) 301, 439, 495, 580
HpyCH4III ACNGT 2 cut(s) 53, 481
HpyCH4IV ACGT 2 cut(s) 32, 361
HpyCH4V TGCA 5 cut(s) 46, 71, 183, 302, 514
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 3 cut(s) 218, 305, 382
HpySE526I ACGT 2 cut(s) 32, 361
Hsp92II CATG 3 cut(s) 250, 347, 718
HspAI GCGC 1 cut(s) 531
Kzo9I GATC 5 cut(s) 119, 404, 523, 633, 646
LguI GCTCTTC 1 cut(s) 111
Lsp1109I GCAGC 3 cut(s) 27, 30, 83
MaeI CTAG 4 cut(s) 132, 527, 770, 793
MaeII ACGT 2 cut(s) 32, 361
MaeIII GTNAC 4 cut(s) 61, 134, 196, 212
MalI GATC 5 cut(s) 121, 406, 525, 635, 648
MboI GATC 5 cut(s) 119, 404, 523, 633, 646
MboII GAAGA 5 cut(s) 98, 487, 711, 758, 780
MflI RGATCY 3 cut(s) 119, 404, 523
MhlI GDGCHC 1 cut(s) 211
MluCI AATT 4 cut(s) 347, 394, 610, 621
MlyI GAGTC 2 cut(s) 596, 730
MmeI TCCRAC 1 cut(s) 630
MnlI CCTC 5 cut(s) 29, 150, 178, 184, 227
MseI TTAA 2 cut(s) 575, 674
MwoI GCNNNNNNNGC 1 cut(s) 110
NdeII GATC 5 cut(s) 119, 404, 523, 633, 646
NlaIII CATG 3 cut(s) 250, 347, 718
NlaIV GGNNCC 3 cut(s) 262, 406, 427
NmuCI GTSAC 2 cut(s) 134, 212
NspI RCATGY 1 cut(s) 718
PciI ACATGT 1 cut(s) 714
PciSI GCTCTTC 1 cut(s) 111
PfeI GAWTC 2 cut(s) 235, 387
PkrI GCNGC 3 cut(s) 42, 45, 73
PleI GAGTC 2 cut(s) 596, 730
PpsI GAGTC 2 cut(s) 596, 730
PpuMI RGGWCCY 1 cut(s) 426
PscI ACATGT 1 cut(s) 714
Psp1406I AACGTT 1 cut(s) 32
Psp5II RGGWCCY 1 cut(s) 426
PspN4I GGNNCC 3 cut(s) 262, 406, 427
PspPI GGNCC 2 cut(s) 426, 689
PspPPI RGGWCCY 1 cut(s) 426
PstNI CAGNNNCTG 1 cut(s) 479
PsuI RGATCY 3 cut(s) 119, 404, 523
RsaI GTAC 4 cut(s) 334, 478, 483, 784
RsaNI GTAC 4 cut(s) 333, 477, 482, 783
SapI GCTCTTC 1 cut(s) 111
SaqAI TTAA 2 cut(s) 575, 674
SatI GCNGC 3 cut(s) 41, 44, 72
Sau3AI GATC 5 cut(s) 119, 404, 523, 633, 646
Sau96I GGNCC 2 cut(s) 426, 689
SchI GAGTC 2 cut(s) 596, 730
SduI GDGCHC 1 cut(s) 211
SfcI CTRYAG 1 cut(s) 57
SinI GGWCC 1 cut(s) 426
SmlI CTYRAG 1 cut(s) 754
SmoI CTYRAG 1 cut(s) 754
SpeI ACTAGT 1 cut(s) 131
Sse9I AATT 4 cut(s) 347, 394, 610, 621
SspMI CTAG 4 cut(s) 132, 527, 770, 793
TaaI ACNGT 2 cut(s) 53, 481
TaiI ACGT 2 cut(s) 35, 364
TasI AATT 4 cut(s) 347, 394, 610, 621
TatI WGTACW 1 cut(s) 782
TfiI GAWTC 2 cut(s) 235, 387
Tru1I TTAA 2 cut(s) 575, 674
Tru9I TTAA 2 cut(s) 575, 674
TscAI CASTG 2 cut(s) 97, 262
TseFI GTSAC 2 cut(s) 134, 212
TseI GCWGC 3 cut(s) 40, 43, 71
Tsp45I GTSAC 2 cut(s) 134, 212
TspDTI ATGAA 2 cut(s) 360, 633
TspGWI ACGGA 1 cut(s) 166
TspRI CASTG 2 cut(s) 97, 262
VpaK11BI GGWCC 1 cut(s) 426
XapI RAATTY 1 cut(s) 621
XbaI TCTAGA 1 cut(s) 769
XceI RCATGY 1 cut(s) 718
XmiI GTMKAC 1 cut(s) 506
XspI CTAG 4 cut(s) 132, 527, 770, 793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.