Rh7AG370200

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Reverse (-)
47742102 .. 47742738
637 bp
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UTR
Exon/CDS
Intron
Rh7AG370200.1

Sequence Viewer

Length: 171 bp
ATGGCTAAAGAACCAGTGGGCAGCGACAAGGAGCGAGGTGGTGAGTGGCAAGAGGCTGTGATTGGGTGTATAGAGGACTGCCGGAGATCGAGTCTGACTCTGGGGCAGGATCTGGGATCCGGGTCGGCGTGGGCTATTATGGAGTCAAGATGCGGTGGCGTTGCTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

56

Amino Acids

5.91

Weight (kDa)

4.89

Isoelectric Point (pI)

58.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 153
AclWI GGATC 3 cut(s) 111, 117, 124
AlwI GGATC 3 cut(s) 111, 117, 124
AlwNI CAGNNNCTG 1 cut(s) 112
ApeKI GCWGC 1 cut(s) 21
AsuC2I CCSGG 1 cut(s) 121
AsuHPI GGTGA 1 cut(s) 53
BamHI GGATCC 1 cut(s) 116
BbvI GCAGC 1 cut(s) 33
BcnI CCSGG 1 cut(s) 121
BisI GCNGC 1 cut(s) 22
BlsI GCNGC 1 cut(s) 23
Bme1390I CCNGG 1 cut(s) 121
BmiI GGNNCC 1 cut(s) 118
BmrFI CCNGG 1 cut(s) 121
BmsI GCATC 1 cut(s) 140
BplI GAGNNNNNCTC 2 cut(s) 82, 114
BpuMI CCSGG 1 cut(s) 121
BsaXI ACNNNNNCTCC 2 cut(s) 76, 106
Bse1I ACTGG 1 cut(s) 14
BseNI ACTGG 1 cut(s) 14
BseXI GCAGC 1 cut(s) 33
BsiSI CCGG 2 cut(s) 82, 120
Bsp143I GATC 3 cut(s) 86, 109, 116
BspACI CCGC 1 cut(s) 153
BspLI GGNNCC 1 cut(s) 118
BspPI GGATC 3 cut(s) 111, 117, 124
BsrI ACTGG 1 cut(s) 14
BssMI GATC 3 cut(s) 86, 109, 116
BstDEI CTNAG 1 cut(s) 165
BstKTI GATC 3 cut(s) 89, 112, 119
BstMBI GATC 3 cut(s) 86, 109, 116
BstSCI CCNGG 1 cut(s) 119
BstV1I GCAGC 1 cut(s) 33
BstX2I RGATCY 2 cut(s) 109, 116
BstYI RGATCY 2 cut(s) 109, 116
BtsIMutI CAGTG 1 cut(s) 21
CaiI CAGNNNCTG 1 cut(s) 112
CviJI RGCY 3 cut(s) 5, 56, 134
CviKI_1 RGCY 3 cut(s) 5, 56, 134
DdeI CTNAG 1 cut(s) 165
DpnI GATC 3 cut(s) 88, 111, 118
DpnII GATC 3 cut(s) 86, 109, 116
FaiI YATR 2 cut(s) 71, 140
Fnu4HI GCNGC 1 cut(s) 22
Fsp4HI GCNGC 1 cut(s) 22
GluI GCNGC 1 cut(s) 22
HapII CCGG 2 cut(s) 82, 120
HinfI GANTC 3 cut(s) 91, 97, 143
HpaII CCGG 2 cut(s) 82, 120
HphI GGTGA 1 cut(s) 53
Hpy188I TCNGA 1 cut(s) 96
Hpy188III TCNNGA 1 cut(s) 147
HpyF3I CTNAG 1 cut(s) 165
Kzo9I GATC 3 cut(s) 86, 109, 116
LmnI GCTCC 1 cut(s) 31
LpnPI CCDG 6 cut(s) 27, 86, 92, 95, 98, 133
Lsp1109I GCAGC 1 cut(s) 33
LweI GCATC 1 cut(s) 140
MalI GATC 3 cut(s) 88, 111, 118
MboI GATC 3 cut(s) 86, 109, 116
MflI RGATCY 2 cut(s) 109, 116
MlyI GAGTC 3 cut(s) 91, 100, 152
MnlI CCTC 3 cut(s) 29, 46, 67
MspI CCGG 2 cut(s) 82, 120
MspR9I CCNGG 1 cut(s) 121
NciI CCSGG 1 cut(s) 121
NdeII GATC 3 cut(s) 86, 109, 116
NlaIV GGNNCC 1 cut(s) 118
PkrI GCNGC 1 cut(s) 23
PleI GAGTC 3 cut(s) 91, 99, 151
PpsI GAGTC 3 cut(s) 91, 99, 151
PspN4I GGNNCC 1 cut(s) 118
PstNI CAGNNNCTG 1 cut(s) 112
PsuI RGATCY 2 cut(s) 109, 116
SatI GCNGC 1 cut(s) 22
Sau3AI GATC 3 cut(s) 86, 109, 116
SchI GAGTC 3 cut(s) 91, 100, 152
ScrFI CCNGG 1 cut(s) 121
SetI ASST 1 cut(s) 40
SfaNI GCATC 1 cut(s) 140
SsiI CCGC 1 cut(s) 153
StyD4I CCNGG 1 cut(s) 119
TaqI TCGA 1 cut(s) 89
TscAI CASTG 1 cut(s) 21
TseI GCWGC 1 cut(s) 21
TspRI CASTG 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.