Rmu_sc0007109.1_g000001

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007109.1
OG0000229
Physical Location & Seq
Forward (+)
3476 .. 3871
396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007109.1_g000001.1.cds

Sequence Viewer

Length: 396 bp
atggcagcacatgtacaaaccaacattagcatagaccagtctgctcttcttgctttcaaatccagtatctccaatgatcctcataacctgatcttcaccaactggtcaaccatcaccccagtttgtaattgggttggcgttacttgtgctgctcgccaccatagagtggtgttcttgaacttgtcttattttggtctcagtggcatcattcctccggagctaggaaacctttcatttcttgtagatcttcgcctaaaaaataatagttttcatggtaccttgcctctggaattggctagcctacactggttgaggttgattagcatgggatataacaagtttatgggaaacattccctcatggttttgggtccttatccaaacttcaaacatttaa

Protein Analysis

131

Amino Acids

14.72

Weight (kDa)

8.77

Isoelectric Point (pI)

27.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 275
AccB1I GGYRCC 1 cut(s) 275
AccB7I CCANNNNNTGG 1 cut(s) 166
AccIII TCCGGA 1 cut(s) 214
AclWI GGATC 1 cut(s) 71
AfaI GTAC 2 cut(s) 15, 277
AfiI CCNNNNNNNGG 2 cut(s) 166, 221
AflIII ACRYGT 1 cut(s) 10
AgsI TTSAA 3 cut(s) 58, 178, 387
AluBI AGCT 1 cut(s) 220
AluI AGCT 1 cut(s) 220
Alw26I GTCTC 1 cut(s) 200
AlwI GGATC 1 cut(s) 71
Aor13HI TCCGGA 1 cut(s) 214
ApeKI GCWGC 2 cut(s) 5, 149
Asp700I GAANNNNTTC 1 cut(s) 229
Asp718I GGTACC 1 cut(s) 275
AspS9I GGNCC 1 cut(s) 370
AsuHPI GGTGA 2 cut(s) 88, 106
AsuNHI GCTAGC 1 cut(s) 296
AvaII GGWCC 1 cut(s) 370
BanI GGYRCC 1 cut(s) 275
BbvI GCAGC 2 cut(s) 17, 136
BccI CCATC 1 cut(s) 119
BcoDI GTCTC 1 cut(s) 200
BfaI CTAG 2 cut(s) 221, 297
BglII AGATCT 1 cut(s) 244
BisI GCNGC 2 cut(s) 6, 150
BlsI GCNGC 2 cut(s) 7, 151
Bme18I GGWCC 1 cut(s) 370
BmgT120I GGNCC 1 cut(s) 370
BmiI GGNNCC 2 cut(s) 277, 371
BmrI ACTGGG 1 cut(s) 113
BmsI GCATC 1 cut(s) 213
BmtI GCTAGC 1 cut(s) 300
BmuI ACTGGG 1 cut(s) 113
BsaI GGTCTC 1 cut(s) 200
BsaWI WCCGGW 1 cut(s) 214
Bsc4I CCNNNNNNNGG 2 cut(s) 166, 221
Bse1I ACTGG 5 cut(s) 37, 63, 107, 119, 311
BseAI TCCGGA 1 cut(s) 214
BseLI CCNNNNNNNGG 2 cut(s) 166, 221
BseMII CTCAG 1 cut(s) 211
BseNI ACTGG 5 cut(s) 37, 63, 107, 119, 311
BseXI GCAGC 2 cut(s) 17, 136
BshNI GGYRCC 1 cut(s) 275
BsiSI CCGG 1 cut(s) 215
BslI CCNNNNNNNGG 2 cut(s) 166, 221
BsmAI GTCTC 1 cut(s) 200
Bso31I GGTCTC 1 cut(s) 200
Bsp13I TCCGGA 1 cut(s) 214
Bsp1407I TGTACA 1 cut(s) 13
Bsp143I GATC 3 cut(s) 76, 90, 244
BspCNI CTCAG 1 cut(s) 210
BspEI TCCGGA 1 cut(s) 214
BspLI GGNNCC 2 cut(s) 277, 371
BspOI GCTAGC 1 cut(s) 300
BspPI GGATC 1 cut(s) 71
BspQI GCTCTTC 1 cut(s) 51
BspT107I GGYRCC 1 cut(s) 275
BspTNI GGTCTC 1 cut(s) 200
BsrGI TGTACA 1 cut(s) 13
BsrI ACTGG 5 cut(s) 37, 63, 107, 119, 311
BssMI GATC 3 cut(s) 76, 90, 244
Bst6I CTCTTC 1 cut(s) 51
BstAUI TGTACA 1 cut(s) 13
BstC8I GCNNGC 2 cut(s) 154, 298
BstDEI CTNAG 1 cut(s) 197
BstKTI GATC 3 cut(s) 79, 93, 247
BstMAI GTCTC 1 cut(s) 200
BstMBI GATC 3 cut(s) 76, 90, 244
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstNSI RCATGY 1 cut(s) 14
BstV1I GCAGC 2 cut(s) 17, 136
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
BtsIMutI CAGTG 2 cut(s) 205, 304
Cac8I GCNNGC 2 cut(s) 154, 298
Cfr13I GGNCC 1 cut(s) 370
Csp6I GTAC 2 cut(s) 14, 276
CviAII CATG 4 cut(s) 11, 272, 325, 360
CviJI RGCY 3 cut(s) 220, 296, 300
CviKI_1 RGCY 3 cut(s) 220, 296, 300
CviQI GTAC 2 cut(s) 14, 276
DdeI CTNAG 1 cut(s) 197
DpnI GATC 3 cut(s) 78, 92, 246
DpnII GATC 3 cut(s) 76, 90, 244
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco31I GGTCTC 1 cut(s) 200
Eco47I GGWCC 1 cut(s) 370
EcoO109I RGGNCCY 1 cut(s) 370
FaeI CATG 4 cut(s) 14, 275, 328, 363
FaiI YATR 9 cut(s) 12, 32, 84, 162, 273, 326, 333, 344, 361
FatI CATG 4 cut(s) 10, 271, 324, 359
Fnu4HI GCNGC 2 cut(s) 6, 150
Fsp4HI GCNGC 2 cut(s) 6, 150
FspBI CTAG 2 cut(s) 221, 297
GluI GCNGC 2 cut(s) 6, 150
HapII CCGG 1 cut(s) 215
Hin1II CATG 4 cut(s) 14, 275, 328, 363
HincII GTYRAC 1 cut(s) 108
HindII GTYRAC 1 cut(s) 108
HpaII CCGG 1 cut(s) 215
HphI GGTGA 2 cut(s) 88, 106
Hpy166II GTNNAC 1 cut(s) 108
Hpy188III TCNNGA 3 cut(s) 175, 215, 287
Hpy8I GTNNAC 1 cut(s) 108
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpyF3I CTNAG 1 cut(s) 197
Hsp92II CATG 4 cut(s) 14, 275, 328, 363
Kpn2I TCCGGA 1 cut(s) 214
KpnI GGTACC 1 cut(s) 279
Kzo9I GATC 3 cut(s) 76, 90, 244
LguI GCTCTTC 1 cut(s) 51
LmnI GCTCC 1 cut(s) 217
LpnPI CCDG 8 cut(s) 50, 76, 88, 101, 132, 228, 272, 292
Lsp1109I GCAGC 2 cut(s) 17, 136
LweI GCATC 1 cut(s) 213
MaeI CTAG 2 cut(s) 221, 297
MaeIII GTNAC 1 cut(s) 139
MalI GATC 3 cut(s) 78, 92, 246
MboI GATC 3 cut(s) 76, 90, 244
MboII GAAGA 3 cut(s) 38, 85, 239
MflI RGATCY 1 cut(s) 244
MluCI AATT 2 cut(s) 127, 290
MnlI CCTC 5 cut(s) 90, 222, 294, 306, 367
MroI TCCGGA 1 cut(s) 214
MroXI GAANNNNTTC 1 cut(s) 229
MseI TTAA 1 cut(s) 394
MspI CCGG 1 cut(s) 215
MwoI GCNNNNNNNGC 1 cut(s) 50
NdeII GATC 3 cut(s) 76, 90, 244
NheI GCTAGC 1 cut(s) 296
NlaIII CATG 4 cut(s) 14, 275, 328, 363
NlaIV GGNNCC 2 cut(s) 277, 371
NspI RCATGY 1 cut(s) 14
PciI ACATGT 1 cut(s) 10
PciSI GCTCTTC 1 cut(s) 51
PdmI GAANNNNTTC 1 cut(s) 229
PflMI CCANNNNNTGG 1 cut(s) 166
PkrI GCNGC 2 cut(s) 7, 151
PpuMI RGGWCCY 1 cut(s) 370
PscI ACATGT 1 cut(s) 10
Psp5II RGGWCCY 1 cut(s) 370
PspN4I GGNNCC 2 cut(s) 277, 371
PspPI GGNCC 1 cut(s) 370
PspPPI RGGWCCY 1 cut(s) 370
PsuI RGATCY 1 cut(s) 244
RsaI GTAC 2 cut(s) 15, 277
RsaNI GTAC 2 cut(s) 14, 276
SapI GCTCTTC 1 cut(s) 51
SaqAI TTAA 1 cut(s) 394
SatI GCNGC 2 cut(s) 6, 150
Sau3AI GATC 3 cut(s) 76, 90, 244
Sau96I GGNCC 1 cut(s) 370
SetI ASST 5 cut(s) 90, 222, 231, 281, 317
SfaNI GCATC 1 cut(s) 213
SinI GGWCC 1 cut(s) 370
Sse9I AATT 2 cut(s) 127, 290
SspMI CTAG 2 cut(s) 221, 297
TasI AATT 2 cut(s) 127, 290
TatI WGTACW 1 cut(s) 13
Tru1I TTAA 1 cut(s) 394
Tru9I TTAA 1 cut(s) 394
TscAI CASTG 2 cut(s) 205, 311
TseI GCWGC 2 cut(s) 5, 149
TspDTI ATGAA 2 cut(s) 222, 260
TspRI CASTG 2 cut(s) 205, 311
Van91I CCANNNNNTGG 1 cut(s) 166
VpaK11BI GGWCC 1 cut(s) 370
XceI RCATGY 1 cut(s) 14
XcmI CCANNNNNNNNNTGG 1 cut(s) 126
XmnI GAANNNNTTC 1 cut(s) 229
XspI CTAG 2 cut(s) 221, 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.