Rroxscaffold_1G00065410

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000229
Physical Location & Seq
Forward (+)
87089654 .. 87091403
1750 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00065410.1

Sequence Viewer

Length: 1143 bp
ATGGCGGCTAGCTGCTTAACTATGGCAGCACAACAAACCAACATCACCACAGACCAATCTGCTCTACTTGCTCTCAAAGCCCGTATCACCAGTGATCCTGATAACTTGATCTTGACCAACTGGTCAACCACCACTCCTGTTTGCAACTGGGTTGGCGTTGCTTGTGGTAAACATCATCATCGAGTCAGAACCTTGAATATCTCTTATTTTTGTCTCACCGGCACCATTCCTCCGGAGCTTGGCAACCTATCATTTCTTGTTGAGTTGCTTGTCAGAAATAACAATTTTCATGGTACCTTGCCTTCAGAGTTGGGTCATTTGCACAGAATGAAGTTCATTAGTTTCACATTTAACCAGTTTTCAGGAATCATTCCGTCATGGTTTGGGTCCTTATCCAAGCTTCAAGACTTGTATTTGTATGGTAATAAATTTTCAGGTTCCATACCAGCTGCCATCTTCAACTTATCTGCATTGCAAGTAATTTCTTTGAGCTGTAACCAACTATCAGGTAGTATACCGAGAGAAATTGGAAATTTATCAACGTTGAAGGAGATCTACCTTGATAATAATAACTTCATAGAAATTCCAAATGAGATCGGAGCTTTAGATCAACTAGAGAATTTGTTTATGGAAGAAAATGCCCTAGAAGGAAATGTTCCTATGGTTGTCTTCAACATGTCTTCATTGGTTACTTTGACTCTATATGGAAACAAATTAAAGGGTAAACTTCCAAACAATATGTGCCAGAATCTTCTGCATATTCAAAAATTGAATTTCGGTTTTAACCAGCTTGAAGGTCCACTTCCATCTATATATTGGCAATGCAAACAACTTGTTGATTTAAGATTGGGACGTAACAAGTTCAGTGGCAGCATACCCAAAGATATTGGGAACGCAACCCAATTAAAGCAAGTTTATCTTGCCAAAAACAATTTGACAGGTTCCATACCAGCGACCATCTTCAACTTATCTGCACTGCAAGTAATTTCTTTGAAATCTAACCAACTATCAGGTAGTATACCGAGAGAAATTGGAAATTTAACAACGTTGAAAGAGATCTACCTTTTAGATAATAATTTCACAGGTTGGCCCCCTTGCCTAGGTGTACAATTTTATTTTTCTTTCAATCAATTTCCCTTGTGA

Protein Analysis

380

Amino Acids

42.2

Weight (kDa)

8.36

Isoelectric Point (pI)

28.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 17 - 55 7.8e-10 Leucine rich repeat N-terminal domain
LRR_14 PF23598 63 - 167 1.5e-07 Leucine-rich repeat region
LRR_8 PF13855 116 - 168 5.6e-08 Leucine rich repeat
LRR_8 PF13855 149 - 192 1.6e-06 Leucine rich repeat
LRR_14 PF23598 154 - 260 8.1e-11 Leucine-rich repeat region
LRR_8 PF13855 301 - 360 8.9e-08 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 121
Acc65I GGTACC 1 cut(s) 293
AccB1I GGYRCC 2 cut(s) 221, 293
AccI GTMKAC 2 cut(s) 514, 1018
AccIII TCCGGA 1 cut(s) 232
AciI CCGC 1 cut(s) 5
AclI AACGTT 2 cut(s) 542, 1046
AclWI GGATC 1 cut(s) 89
AcsI RAATTY 6 cut(s) 428, 532, 582, 619, 772, 1036
AcuI CTGAAG 1 cut(s) 288
AfaI GTAC 2 cut(s) 295, 1107
AfiI CCNNNNNNNGG 2 cut(s) 239, 1100
AflIII ACRYGT 1 cut(s) 675
AluBI AGCT 7 cut(s) 12, 238, 400, 449, 492, 602, 790
AluI AGCT 7 cut(s) 12, 238, 400, 449, 492, 602, 790
Alw26I GTCTC 1 cut(s) 218
AlwI GGATC 1 cut(s) 89
Aor13HI TCCGGA 1 cut(s) 232
AoxI GGCC 1 cut(s) 1088
ApeKI GCWGC 4 cut(s) 12, 26, 449, 870
ApoI RAATTY 6 cut(s) 428, 532, 582, 619, 772, 1036
Asp718I GGTACC 1 cut(s) 293
AspA2I CCTAGG 1 cut(s) 1099
AspS9I GGNCC 3 cut(s) 387, 797, 1089
AsuHPI GGTGA 3 cut(s) 37, 79, 208
AsuNHI GCTAGC 1 cut(s) 8
AvaII GGWCC 2 cut(s) 387, 797
AvrII CCTAGG 1 cut(s) 1099
BanI GGYRCC 2 cut(s) 221, 293
BarI GAAGNNNNNNTAC 4 cut(s) 286, 318, 539, 571
BbsI GAAGAC 2 cut(s) 661, 672
BbvI GCAGC 3 cut(s) 38, 436, 882
BccI CCATC 3 cut(s) 461, 814, 965
BcoDI GTCTC 1 cut(s) 218
BfaI CTAG 4 cut(s) 9, 614, 644, 1100
BglII AGATCT 2 cut(s) 552, 1056
BisI GCNGC 5 cut(s) 6, 13, 27, 450, 871
BlnI CCTAGG 1 cut(s) 1099
BlsI GCNGC 5 cut(s) 7, 14, 28, 451, 872
Bme18I GGWCC 2 cut(s) 387, 797
BmgT120I GGNCC 3 cut(s) 387, 797, 1089
BmiI GGNNCC 6 cut(s) 223, 295, 388, 439, 943, 1091
BmrI ACTGGG 1 cut(s) 157
BmtI GCTAGC 1 cut(s) 12
BmuI ACTGGG 1 cut(s) 157
BpiI GAAGAC 2 cut(s) 661, 672
BsaJI CCNNGG 1 cut(s) 1099
BsaWI WCCGGW 1 cut(s) 232
BsaXI ACNNNNNCTCC 4 cut(s) 118, 148, 214, 244
Bsc4I CCNNNNNNNGG 2 cut(s) 239, 1100
Bse118I RCCGGY 1 cut(s) 218
Bse1I ACTGG 4 cut(s) 90, 125, 152, 355
Bse3DI GCAATG 2 cut(s) 470, 827
BseAI TCCGGA 1 cut(s) 232
BseDI CCNNGG 1 cut(s) 1099
BseLI CCNNNNNNNGG 2 cut(s) 239, 1100
BseMI GCAATG 2 cut(s) 470, 827
BseNI ACTGG 4 cut(s) 90, 125, 152, 355
BseXI GCAGC 3 cut(s) 38, 436, 882
BsgI GTGCAG 1 cut(s) 957
BshFI GGCC 1 cut(s) 1090
BshNI GGYRCC 2 cut(s) 221, 293
BsiSI CCGG 2 cut(s) 219, 233
BslFI GGGAC 1 cut(s) 864
BslI CCNNNNNNNGG 2 cut(s) 239, 1100
BsmAI GTCTC 1 cut(s) 218
BsmFI GGGAC 1 cut(s) 864
BsnI GGCC 1 cut(s) 1090
Bsp13I TCCGGA 1 cut(s) 232
Bsp1407I TGTACA 1 cut(s) 1105
Bsp143I GATC 6 cut(s) 94, 108, 552, 594, 607, 1056
BspACI CCGC 1 cut(s) 5
BspANI GGCC 1 cut(s) 1090
BspEI TCCGGA 1 cut(s) 232
BspLI GGNNCC 6 cut(s) 223, 295, 388, 439, 943, 1091
BspOI GCTAGC 1 cut(s) 12
BspPI GGATC 1 cut(s) 89
BspT107I GGYRCC 2 cut(s) 221, 293
BsrDI GCAATG 2 cut(s) 470, 827
BsrFI RCCGGY 1 cut(s) 218
BsrGI TGTACA 1 cut(s) 1105
BsrI ACTGG 4 cut(s) 90, 125, 152, 355
BssAI RCCGGY 1 cut(s) 218
BssECI CCNNGG 1 cut(s) 1099
BssMI GATC 6 cut(s) 94, 108, 552, 594, 607, 1056
BssNAI GTATAC 2 cut(s) 515, 1019
BssT1I CCWWGG 1 cut(s) 1099
Bst1107I GTATAC 2 cut(s) 515, 1019
BstAUI TGTACA 1 cut(s) 1105
BstC8I GCNNGC 1 cut(s) 10
BstENI CCTNNNNNAGG 1 cut(s) 1098
BstKTI GATC 6 cut(s) 97, 111, 555, 597, 610, 1059
BstMAI GTCTC 1 cut(s) 218
BstMBI GATC 6 cut(s) 94, 108, 552, 594, 607, 1056
BstMWI GCNNNNNNNGC 2 cut(s) 68, 77
BstNSI RCATGY 1 cut(s) 679
BstV1I GCAGC 3 cut(s) 38, 436, 882
BstV2I GAAGAC 2 cut(s) 661, 672
BstX2I RGATCY 2 cut(s) 552, 1056
BstYI RGATCY 2 cut(s) 552, 1056
BstZ17I GTATAC 2 cut(s) 515, 1019
BsuRI GGCC 1 cut(s) 1090
BtsI GCAGTG 1 cut(s) 974
BtsIMutI CAGTG 3 cut(s) 97, 871, 974
Cac8I GCNNGC 1 cut(s) 10
Cfr10I RCCGGY 1 cut(s) 218
Cfr13I GGNCC 3 cut(s) 387, 797, 1089
Csp6I GTAC 2 cut(s) 294, 1106
CspCI CAANNNNNGTGG 2 cut(s) 847, 882
CviAII CATG 3 cut(s) 290, 378, 676
CviQI GTAC 2 cut(s) 294, 1106
DpnI GATC 6 cut(s) 96, 110, 554, 596, 609, 1058
DpnII GATC 6 cut(s) 94, 108, 552, 594, 607, 1056
DrdI GACNNNNNNGTC 1 cut(s) 121
DseDI GACNNNNNNGTC 1 cut(s) 121
Eco130I CCWWGG 1 cut(s) 1099
Eco47I GGWCC 2 cut(s) 387, 797
Eco57I CTGAAG 1 cut(s) 288
EcoNI CCTNNNNNAGG 1 cut(s) 1098
EcoO109I RGGNCCY 1 cut(s) 387
EcoT14I CCWWGG 1 cut(s) 1099
ErhI CCWWGG 1 cut(s) 1099
FaeI CATG 3 cut(s) 293, 381, 679
FalI AAGNNNNNCTT 4 cut(s) 786, 818, 903, 935
FaqI GGGAC 1 cut(s) 864
FatI CATG 3 cut(s) 289, 377, 675
FblI GTMKAC 2 cut(s) 514, 1018
Fnu4HI GCNGC 5 cut(s) 6, 13, 27, 450, 871
Fsp4HI GCNGC 5 cut(s) 6, 13, 27, 450, 871
FspBI CTAG 4 cut(s) 9, 614, 644, 1100
GluI GCNGC 5 cut(s) 6, 13, 27, 450, 871
HaeIII GGCC 1 cut(s) 1090
HapII CCGG 2 cut(s) 219, 233
Hin1II CATG 3 cut(s) 293, 381, 679
HincII GTYRAC 1 cut(s) 126
HindII GTYRAC 1 cut(s) 126
HindIII AAGCTT 1 cut(s) 398
HinfI GANTC 4 cut(s) 183, 366, 697, 748
HpaII CCGG 2 cut(s) 219, 233
HphI GGTGA 3 cut(s) 37, 79, 208
Hpy166II GTNNAC 7 cut(s) 126, 170, 515, 725, 800, 1019, 1106
Hpy188I TCNGA 4 cut(s) 188, 275, 307, 599
Hpy188III TCNNGA 5 cut(s) 98, 112, 233, 363, 404
Hpy8I GTNNAC 7 cut(s) 126, 170, 515, 725, 800, 1019, 1106
HpyAV CCTTC 4 cut(s) 312, 541, 641, 788
HpyCH4IV ACGT 3 cut(s) 542, 853, 1046
HpyCH4V TGCA 8 cut(s) 144, 322, 470, 475, 757, 825, 974, 979
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 77
HpySE526I ACGT 3 cut(s) 542, 853, 1046
Hsp92II CATG 3 cut(s) 293, 381, 679
Kpn2I TCCGGA 1 cut(s) 232
KpnI GGTACC 1 cut(s) 297
Kzo9I GATC 6 cut(s) 94, 108, 552, 594, 607, 1056
LmnI GCTCC 2 cut(s) 235, 599
Lsp1109I GCAGC 3 cut(s) 38, 436, 882
MaeI CTAG 4 cut(s) 9, 614, 644, 1100
MaeII ACGT 3 cut(s) 542, 853, 1046
MaeIII GTNAC 3 cut(s) 494, 688, 854
MalI GATC 6 cut(s) 96, 110, 554, 596, 609, 1058
MboI GATC 6 cut(s) 94, 108, 552, 594, 607, 1056
MboII GAAGA 6 cut(s) 448, 644, 661, 672, 743, 952
MflI RGATCY 2 cut(s) 552, 1056
MlyI GAGTC 2 cut(s) 192, 691
MnlI CCTC 1 cut(s) 240
MroI TCCGGA 1 cut(s) 232
MseI TTAA 7 cut(s) 17, 351, 716, 783, 842, 905, 1040
MspA1I CMGCKG 1 cut(s) 449
MspI CCGG 2 cut(s) 219, 233
MwoI GCNNNNNNNGC 2 cut(s) 68, 77
NdeII GATC 6 cut(s) 94, 108, 552, 594, 607, 1056
NheI GCTAGC 1 cut(s) 8
NlaIII CATG 3 cut(s) 293, 381, 679
NlaIV GGNNCC 6 cut(s) 223, 295, 388, 439, 943, 1091
NspI RCATGY 1 cut(s) 679
PciI ACATGT 1 cut(s) 675
PfeI GAWTC 2 cut(s) 366, 748
PkrI GCNGC 5 cut(s) 7, 14, 28, 451, 872
PleI GAGTC 2 cut(s) 191, 691
PpsI GAGTC 2 cut(s) 191, 691
PpuMI RGGWCCY 1 cut(s) 387
PscI ACATGT 1 cut(s) 675
Psp1406I AACGTT 2 cut(s) 542, 1046
Psp5II RGGWCCY 1 cut(s) 387
PspN4I GGNNCC 6 cut(s) 223, 295, 388, 439, 943, 1091
PspPI GGNCC 3 cut(s) 387, 797, 1089
PspPPI RGGWCCY 1 cut(s) 387
PsuI RGATCY 2 cut(s) 552, 1056
PvuII CAGCTG 1 cut(s) 449
RsaI GTAC 2 cut(s) 295, 1107
RsaNI GTAC 2 cut(s) 294, 1106
SaqAI TTAA 7 cut(s) 17, 351, 716, 783, 842, 905, 1040
SatI GCNGC 5 cut(s) 6, 13, 27, 450, 871
Sau3AI GATC 6 cut(s) 94, 108, 552, 594, 607, 1056
Sau96I GGNCC 3 cut(s) 387, 797, 1089
SchI GAGTC 2 cut(s) 192, 691
SinI GGWCC 2 cut(s) 387, 797
SsiI CCGC 1 cut(s) 5
SspMI CTAG 4 cut(s) 9, 614, 644, 1100
StyI CCWWGG 1 cut(s) 1099
TaiI ACGT 3 cut(s) 545, 856, 1049
TaqI TCGA 1 cut(s) 181
TatI WGTACW 1 cut(s) 1105
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 2 cut(s) 366, 748
Tru1I TTAA 7 cut(s) 17, 351, 716, 783, 842, 905, 1040
Tru9I TTAA 7 cut(s) 17, 351, 716, 783, 842, 905, 1040
TscAI CASTG 3 cut(s) 97, 871, 981
TseI GCWGC 4 cut(s) 12, 26, 449, 870
TspDTI ATGAA 5 cut(s) 278, 325, 344, 565, 672
TspGWI ACGGA 1 cut(s) 363
TspRI CASTG 3 cut(s) 97, 871, 981
VpaK11BI GGWCC 2 cut(s) 387, 797
XagI CCTNNNNNAGG 1 cut(s) 1098
XapI RAATTY 6 cut(s) 428, 532, 582, 619, 772, 1036
XceI RCATGY 1 cut(s) 679
XcmI CCANNNNNNNNNTGG 1 cut(s) 813
XmaJI CCTAGG 1 cut(s) 1099
XmiI GTMKAC 2 cut(s) 514, 1018
XspI CTAG 4 cut(s) 9, 614, 644, 1100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.