Rmu_sc0009975.1_g000007

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009975.1
OG0000229
Physical Location & Seq
Reverse (-)
40688 .. 42000
1313 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009975.1_g000007.1.cds

Sequence Viewer

Length: 624 bp
atggcagcacaaaccaacatcagcacagaccaatctgctcttcttgctctcaaatcccgtatcatcagtgaccctcataacaagatcttcaccaactggtcaaccacgactcatgtttgcaacttggttggtgtgacttgtggtgctccttatcatcgagtcacaatcttgaacctctccaacatggaactcacaggcaccattcctccggagctaagcaatctttattttcttgttaggctaagctttaaaaataacagctttcatgaaattccaaatgacatcggcactttgaatgagttagagtacttatttgtgcaagaaaatgcccttaaaggaccttttcccgttgctgtcctcaacatgtcttccttgattactttggctttcaatagaaacagtttgagtggtagtcttccgaacaatatatgtcaatatcttccgagtatttgtgggagtagtcaaatatttccgacatgtcgttatgccgattatgcggtcatgaatatggttataaatgcggtcctcattgcagctataagtacggcggtaattgcggcgataagtatggcgtttactacggctttaagggcaatgacggttatgaaatcatcacagcaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

207

Amino Acids

22.58

Weight (kDa)

7.66

Isoelectric Point (pI)

35.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 515
AccB1I GGYRCC 1 cut(s) 197
AccIII TCCGGA 1 cut(s) 208
AciI CCGC 4 cut(s) 497, 521, 548, 557
AcsI RAATTY 1 cut(s) 270
AfaI GTAC 2 cut(s) 308, 544
AflIII ACRYGT 2 cut(s) 363, 476
AgsI TTSAA 3 cut(s) 172, 295, 391
AjuI GAANNNNNNNTTGG 2 cut(s) 24, 56
AluBI AGCT 4 cut(s) 214, 246, 261, 536
AluI AGCT 4 cut(s) 214, 246, 261, 536
Alw21I GWGCWC 1 cut(s) 148
Aor13HI TCCGGA 1 cut(s) 208
ApeKI GCWGC 2 cut(s) 5, 533
ApoI RAATTY 1 cut(s) 270
AspS9I GGNCC 2 cut(s) 338, 523
AsuHPI GGTGA 1 cut(s) 82
AvaII GGWCC 2 cut(s) 338, 523
BanI GGYRCC 1 cut(s) 197
BbsI GAAGAC 2 cut(s) 360, 407
Bbv12I GWGCWC 1 cut(s) 148
BbvI GCAGC 2 cut(s) 17, 545
BceAI ACGGC 2 cut(s) 561, 597
BglII AGATCT 1 cut(s) 84
BisI GCNGC 3 cut(s) 6, 534, 558
BlpI GCTNAGC 2 cut(s) 215, 242
BlsI GCNGC 3 cut(s) 7, 535, 559
BmcAI AGTACT 1 cut(s) 308
Bme18I GGWCC 2 cut(s) 338, 523
BmgT120I GGNCC 2 cut(s) 338, 523
BmiI GGNNCC 1 cut(s) 199
BpiI GAAGAC 2 cut(s) 360, 407
Bpu1102I GCTNAGC 2 cut(s) 215, 242
BsaWI WCCGGW 1 cut(s) 208
BsaXI ACNNNNNCTCC 2 cut(s) 190, 220
Bse1I ACTGG 1 cut(s) 101
Bse3DI GCAATG 2 cut(s) 528, 600
BseAI TCCGGA 1 cut(s) 208
BseMI GCAATG 2 cut(s) 528, 600
BseNI ACTGG 1 cut(s) 101
BseXI GCAGC 2 cut(s) 17, 545
BshNI GGYRCC 1 cut(s) 197
BsiHKAI GWGCWC 1 cut(s) 148
BsiSI CCGG 1 cut(s) 209
Bsp1286I GDGCHC 1 cut(s) 148
Bsp13I TCCGGA 1 cut(s) 208
Bsp143I GATC 1 cut(s) 84
Bsp1720I GCTNAGC 2 cut(s) 215, 242
BspACI CCGC 4 cut(s) 497, 521, 548, 557
BspEI TCCGGA 1 cut(s) 208
BspHI TCATGA 2 cut(s) 265, 501
BspLI GGNNCC 1 cut(s) 199
BspQI GCTCTTC 1 cut(s) 45
BspT107I GGYRCC 1 cut(s) 197
BsrDI GCAATG 2 cut(s) 528, 600
BsrI ACTGG 1 cut(s) 101
BssMI GATC 1 cut(s) 84
Bst4CI ACNGT 2 cut(s) 401, 601
Bst6I CTCTTC 1 cut(s) 45
BstDEI CTNAG 2 cut(s) 215, 242
BstKTI GATC 1 cut(s) 87
BstMBI GATC 1 cut(s) 84
BstMWI GCNNNNNNNGC 4 cut(s) 44, 494, 554, 590
BstNSI RCATGY 2 cut(s) 367, 480
BstV1I GCAGC 2 cut(s) 17, 545
BstV2I GAAGAC 2 cut(s) 360, 407
BstX2I RGATCY 1 cut(s) 84
BstYI RGATCY 1 cut(s) 84
BtsIMutI CAGTG 1 cut(s) 73
CciI TCATGA 2 cut(s) 265, 501
Cfr13I GGNCC 2 cut(s) 338, 523
Csp6I GTAC 2 cut(s) 307, 543
CviAII CATG 6 cut(s) 113, 184, 266, 364, 477, 502
CviJI RGCY 7 cut(s) 214, 241, 246, 261, 386, 536, 584
CviKI_1 RGCY 7 cut(s) 214, 241, 246, 261, 386, 536, 584
CviQI GTAC 2 cut(s) 307, 543
DdeI CTNAG 2 cut(s) 215, 242
DpnI GATC 1 cut(s) 86
DpnII GATC 1 cut(s) 84
DraI TTTAAA 1 cut(s) 250
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
Eco47I GGWCC 2 cut(s) 338, 523
EcoO109I RGGNCCY 1 cut(s) 338
FaeI CATG 6 cut(s) 116, 187, 269, 367, 480, 505
FatI CATG 6 cut(s) 112, 183, 265, 363, 476, 501
Fnu4HI GCNGC 3 cut(s) 6, 534, 558
Fsp4HI GCNGC 3 cut(s) 6, 534, 558
GluI GCNGC 3 cut(s) 6, 534, 558
HapII CCGG 1 cut(s) 209
Hin1II CATG 6 cut(s) 116, 187, 269, 367, 480, 505
HincII GTYRAC 1 cut(s) 102
HindII GTYRAC 1 cut(s) 102
HindIII AAGCTT 1 cut(s) 244
HinfI GANTC 2 cut(s) 109, 159
HpaII CCGG 1 cut(s) 209
HphI GGTGA 1 cut(s) 82
Hpy166II GTNNAC 2 cut(s) 102, 576
Hpy188I TCNGA 3 cut(s) 420, 444, 474
Hpy188III TCNNGA 4 cut(s) 169, 209, 266, 502
Hpy8I GTNNAC 2 cut(s) 102, 576
HpyCH4III ACNGT 2 cut(s) 401, 601
HpyCH4V TGCA 3 cut(s) 120, 319, 533
HpyF10VI GCNNNNNNNGC 4 cut(s) 44, 494, 554, 590
HpyF3I CTNAG 2 cut(s) 215, 242
Hsp92II CATG 6 cut(s) 116, 187, 269, 367, 480, 505
Kpn2I TCCGGA 1 cut(s) 208
Kzo9I GATC 1 cut(s) 84
LguI GCTCTTC 1 cut(s) 45
LmnI GCTCC 2 cut(s) 151, 211
LpnPI CCDG 3 cut(s) 82, 180, 222
Lsp1109I GCAGC 2 cut(s) 17, 545
MaeIII GTNAC 3 cut(s) 68, 133, 160
MalI GATC 1 cut(s) 86
MboI GATC 1 cut(s) 84
MboII GAAGA 5 cut(s) 32, 79, 360, 407, 431
MflI RGATCY 1 cut(s) 84
MhlI GDGCHC 1 cut(s) 148
MluCI AATT 2 cut(s) 270, 552
MlyI GAGTC 2 cut(s) 103, 168
MmeI TCCRAC 2 cut(s) 204, 497
MnlI CCTC 5 cut(s) 84, 185, 216, 368, 536
MroI TCCGGA 1 cut(s) 208
MseI TTAA 3 cut(s) 249, 333, 587
MslI CAYNNNNRTG 1 cut(s) 506
MspI CCGG 1 cut(s) 209
MwoI GCNNNNNNNGC 4 cut(s) 44, 494, 554, 590
NdeII GATC 1 cut(s) 84
NlaIII CATG 6 cut(s) 116, 187, 269, 367, 480, 505
NlaIV GGNNCC 1 cut(s) 199
NmuCI GTSAC 3 cut(s) 68, 133, 160
NspI RCATGY 2 cut(s) 367, 480
PagI TCATGA 2 cut(s) 265, 501
PciI ACATGT 2 cut(s) 363, 476
PciSI GCTCTTC 1 cut(s) 45
PkrI GCNGC 3 cut(s) 7, 535, 559
PleI GAGTC 2 cut(s) 103, 167
PpsI GAGTC 2 cut(s) 103, 167
PpuMI RGGWCCY 1 cut(s) 338
PscI ACATGT 2 cut(s) 363, 476
PsiI TTATAA 1 cut(s) 515
Psp5II RGGWCCY 1 cut(s) 338
PspN4I GGNNCC 1 cut(s) 199
PspPI GGNCC 2 cut(s) 338, 523
PspPPI RGGWCCY 1 cut(s) 338
PsuI RGATCY 1 cut(s) 84
RsaI GTAC 2 cut(s) 308, 544
RsaNI GTAC 2 cut(s) 307, 543
RseI CAYNNNNRTG 1 cut(s) 506
SapI GCTCTTC 1 cut(s) 45
SaqAI TTAA 3 cut(s) 249, 333, 587
SatI GCNGC 3 cut(s) 6, 534, 558
Sau3AI GATC 1 cut(s) 84
Sau96I GGNCC 2 cut(s) 338, 523
ScaI AGTACT 1 cut(s) 308
SchI GAGTC 2 cut(s) 103, 168
SduI GDGCHC 1 cut(s) 148
SetI ASST 6 cut(s) 177, 216, 248, 263, 343, 538
SinI GGWCC 2 cut(s) 338, 523
SmiMI CAYNNNNRTG 1 cut(s) 506
Sse9I AATT 2 cut(s) 270, 552
SsiI CCGC 4 cut(s) 497, 521, 548, 557
SspI AATATT 1 cut(s) 468
TaaI ACNGT 2 cut(s) 401, 601
TaqI TCGA 1 cut(s) 157
TasI AATT 2 cut(s) 270, 552
TatI WGTACW 1 cut(s) 306
TauI GCSGC 1 cut(s) 560
Tru1I TTAA 3 cut(s) 249, 333, 587
Tru9I TTAA 3 cut(s) 249, 333, 587
TscAI CASTG 1 cut(s) 73
TseFI GTSAC 3 cut(s) 68, 133, 160
TseI GCWGC 2 cut(s) 5, 533
Tsp45I GTSAC 3 cut(s) 68, 133, 160
TspDTI ATGAA 4 cut(s) 254, 282, 518, 620
TspRI CASTG 1 cut(s) 73
VpaK11BI GGWCC 2 cut(s) 338, 523
XapI RAATTY 1 cut(s) 270
XceI RCATGY 2 cut(s) 367, 480
ZrmI AGTACT 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.