Rw4G009550

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
21527309 .. 21528544
1236 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G009550.1

Sequence Viewer

Length: 1236 bp
ATGGAAAAGCCAAAAGTTCTCCTTTATGGCGTTCTGTTGCTCCAGTTTTTATGCTCCCTTCACTTTGCTGTATCCTCAGCTAATTCCAACTTCACTGATCAATCCGCTCTCCTTGCCATACAATCTAAGCACACTTTTGATCCAACCAAAACTGTCTTGGGTGGTAACTGGACCACTACAACAAGCTTTTGTAATTGGATTGGGGTCTCTTGTAGTAAACAGAGGCAAAGGGTCACAGCCCTGAATCTGTCGTATATGGGACTCCAAGGCACCATTTCCCCCCATGTTGGCAACCTCTCCTCCTTAGTTTCACTTGATCTTCGAAATAACAGCTTCATTGGGTTGCTGCCACATGAAATCAGTCGTCTACCTCGCTTGAGGATACTGGTACTTCAAGAAAACGAGCTGGAAGGAAGTATCCCCCTGACTTTACATCAATGCCAACAGCTTGAAATCATATCCCTTGCAGCAAACAGGCTGAACGGTCTTATACCTAAAGAGTTGGGTCTCTTGCCCAGACTCCAGCAATTATACCTTGGGAAAAACAGTCTCATGTCTGGTGAGATTCCGTCATCTTTGGGGAACATTTCATCACTAAAAAGATTGATTTTGGACCAATGTGGCCTCACAGGTTGCTTCCCCTCACAGGTTTCTCTATATGACAACAACATTTCAGGATTTCTTCCCATTGATATTTGTGATAACCATTGGCCAAATGTTCAAATCCTTTCTGTTTCTTATAACAAATTCAGTGGTCTAATCCCATCATGGATACATCAATGTGCGCAGCTTGTGACCTTATCTTTGTCATACAATAGTCTTGTTGGGAGTATTCCTAGAGAAATTGGGAGTTTACAGTATCTTGAGGAGCTTTACCTTGATGGTAATAACCTAACTGGTACCATACCTCCAACAATAGGTAACATTACTAACTTGAAATACTTGGGTGTGGAACTTAATAACATCCAGGGAAGCATTCCTCCTGAGTTGGGGCATCTGTCGAATTTAACTTCTCTTCTATTTTCTTCTAATGGTCTGACTGGAGTGTTGCCTCAACAAATATTCAATATCTCCTCCCTAAAAAAACTTGCAGGAAGTAATAATGCCCTGTCAGGCGAGCTTCCTAATTCATCAAATACAGTTCACCTACCAAACCTTGAATCCTTCCAGTTTTCTAACAATCACATTACCGGAAACATTCCATCATACTTTTCAAATTTTACCAGCTTATTTTAA

Protein Analysis

411

Amino Acids

44.93

Weight (kDa)

6.78

Isoelectric Point (pI)

40.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 78 - 136 7.7e-06 Leucine rich repeat
LRR_14 PF23598 81 - 269 3.1e-07 Leucine-rich repeat region
LRR_8 PF13855 238 - 298 1.2e-09 Leucine rich repeat
LRR_14 PF23598 262 - 339 4.4e-07 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 741
Acc16I TGCGCA 1 cut(s) 786
Acc65I GGTACC 1 cut(s) 899
AccB1I GGYRCC 2 cut(s) 269, 899
AccBSI CCGCTC 1 cut(s) 107
AccI GTMKAC 1 cut(s) 367
AciI CCGC 1 cut(s) 105
AclWI GGATC 1 cut(s) 134
AcoI YGGCCR 1 cut(s) 710
AcsI RAATTY 3 cut(s) 746, 1003, 1216
AfaI GTAC 2 cut(s) 390, 901
AfiI CCNNNNNNNGG 4 cut(s) 287, 646, 917, 989
AgsI TTSAA 7 cut(s) 395, 452, 722, 937, 1066, 1160, 1215
AjnI CCWGG 1 cut(s) 966
AluBI AGCT 9 cut(s) 80, 186, 333, 406, 448, 790, 871, 1120, 1227
AluI AGCT 9 cut(s) 80, 186, 333, 406, 448, 790, 871, 1120, 1227
Alw26I GTCTC 3 cut(s) 211, 512, 554
AlwI GGATC 1 cut(s) 134
AoxI GGCC 2 cut(s) 622, 710
ApeKI GCWGC 3 cut(s) 346, 467, 787
ApoI RAATTY 3 cut(s) 746, 1003, 1216
ArsI GACNNNNNNTTYG 2 cut(s) 787, 819
Asp718I GGTACC 1 cut(s) 899
AspLEI GCGC 1 cut(s) 787
AspS9I GGNCC 2 cut(s) 171, 613
AsuHPI GGTGA 2 cut(s) 572, 1136
AsuII TTCGAA 1 cut(s) 322
AvaII GGWCC 2 cut(s) 171, 613
BalI TGGCCA 1 cut(s) 712
BanI GGYRCC 2 cut(s) 269, 899
BbvCI CCTCAGC 1 cut(s) 76
BbvI GCAGC 3 cut(s) 333, 479, 799
BccI CCATC 3 cut(s) 772, 875, 1210
BciT130I CCWGG 1 cut(s) 968
BciVI GTATCC 4 cut(s) 82, 375, 428, 765
BclI TGATCA 1 cut(s) 97
BcoDI GTCTC 3 cut(s) 211, 512, 554
BfaI CTAG 1 cut(s) 837
BfuI GTATCC 4 cut(s) 82, 375, 428, 765
BisI GCNGC 3 cut(s) 347, 468, 788
BlsI GCNGC 3 cut(s) 348, 469, 789
Bme1390I CCNGG 1 cut(s) 968
Bme18I GGWCC 2 cut(s) 171, 613
BmgT120I GGNCC 2 cut(s) 171, 613
BmiI GGNNCC 2 cut(s) 271, 901
BmrFI CCNGG 1 cut(s) 968
BmsI GCATC 1 cut(s) 1003
BpmI CTGGAG 3 cut(s) 26, 506, 1062
Bpu10I CCTNAGC 1 cut(s) 76
Bpu14I TTCGAA 1 cut(s) 322
BpuEI CTTGAG 2 cut(s) 397, 884
BsaI GGTCTC 2 cut(s) 211, 512
BsaJI CCNNGG 3 cut(s) 265, 535, 967
BsaWI WCCGGW 1 cut(s) 1190
BsaXI ACNNNNNCTCC 4 cut(s) 284, 314, 892, 922
Bsc4I CCNNNNNNNGG 4 cut(s) 287, 646, 917, 989
Bse1I ACTGG 6 cut(s) 43, 173, 390, 901, 1045, 1168
BseBI CCWGG 1 cut(s) 968
BseDI CCNNGG 3 cut(s) 265, 535, 967
BseGI GGATG 1 cut(s) 963
BseLI CCNNNNNNNGG 4 cut(s) 287, 646, 917, 989
BseMII CTCAG 2 cut(s) 90, 975
BseNI ACTGG 6 cut(s) 43, 173, 390, 901, 1045, 1168
BseRI GAGGAG 3 cut(s) 289, 881, 1063
BseXI GCAGC 3 cut(s) 333, 479, 799
BshFI GGCC 2 cut(s) 624, 712
BshNI GGYRCC 2 cut(s) 269, 899
BsiSI CCGG 1 cut(s) 1191
BslFI GGGAC 1 cut(s) 273
BslI CCNNNNNNNGG 4 cut(s) 287, 646, 917, 989
BsmAI GTCTC 3 cut(s) 211, 512, 554
BsmFI GGGAC 1 cut(s) 273
BsmI GAATGC 1 cut(s) 975
BsnI GGCC 2 cut(s) 624, 712
Bso31I GGTCTC 2 cut(s) 211, 512
Bsp119I TTCGAA 1 cut(s) 322
Bsp143I GATC 3 cut(s) 97, 139, 316
BspACI CCGC 1 cut(s) 105
BspANI GGCC 2 cut(s) 624, 712
BspCNI CTCAG 2 cut(s) 89, 976
BspLI GGNNCC 2 cut(s) 271, 901
BspPI GGATC 1 cut(s) 134
BspT104I TTCGAA 1 cut(s) 322
BspT107I GGYRCC 2 cut(s) 269, 899
BspTNI GGTCTC 2 cut(s) 211, 512
BsrBI CCGCTC 1 cut(s) 107
BsrI ACTGG 6 cut(s) 43, 173, 390, 901, 1045, 1168
BssECI CCNNGG 3 cut(s) 265, 535, 967
BssMI GATC 3 cut(s) 97, 139, 316
BssT1I CCWWGG 2 cut(s) 265, 535
Bst2UI CCWGG 1 cut(s) 968
Bst4CI ACNGT 5 cut(s) 154, 485, 548, 858, 1141
Bst6I CTCTTC 1 cut(s) 1020
BstBI TTCGAA 1 cut(s) 322
BstC8I GCNNGC 1 cut(s) 1118
BstDEI CTNAG 4 cut(s) 76, 126, 304, 984
BstF5I GGATG 1 cut(s) 963
BstHHI GCGC 1 cut(s) 787
BstKTI GATC 3 cut(s) 100, 142, 319
BstMAI GTCTC 3 cut(s) 211, 512, 554
BstMBI GATC 3 cut(s) 97, 139, 316
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstNI CCWGG 1 cut(s) 968
BstSCI CCNGG 1 cut(s) 966
BstV1I GCAGC 3 cut(s) 333, 479, 799
BsuI GTATCC 4 cut(s) 82, 375, 428, 765
BsuRI GGCC 2 cut(s) 624, 712
BtsCI GGATG 1 cut(s) 963
BtsIMutI CAGTG 2 cut(s) 93, 757
Cac8I GCNNGC 1 cut(s) 1118
CfoI GCGC 1 cut(s) 787
Cfr13I GGNCC 2 cut(s) 171, 613
Csp6I GTAC 2 cut(s) 389, 900
CspCI CAANNNNNGTGG 2 cut(s) 733, 768
CviAII CATG 4 cut(s) 284, 353, 553, 768
CviQI GTAC 2 cut(s) 389, 900
DdeI CTNAG 4 cut(s) 76, 126, 304, 984
DpnI GATC 3 cut(s) 99, 141, 318
DpnII GATC 3 cut(s) 97, 139, 316
EaeI YGGCCR 1 cut(s) 710
Eam1104I CTCTTC 1 cut(s) 1020
EarI CTCTTC 1 cut(s) 1020
Eco130I CCWWGG 2 cut(s) 265, 535
Eco31I GGTCTC 2 cut(s) 211, 512
Eco47I GGWCC 2 cut(s) 171, 613
EcoRII CCWGG 1 cut(s) 966
EcoT14I CCWWGG 2 cut(s) 265, 535
ErhI CCWWGG 2 cut(s) 265, 535
FaeI CATG 4 cut(s) 287, 356, 556, 771
FalI AAGNNNNNCTT 1 cut(s) 38
FaqI GGGAC 1 cut(s) 273
FatI CATG 4 cut(s) 283, 352, 552, 767
FbaI TGATCA 1 cut(s) 97
FblI GTMKAC 1 cut(s) 367
Fnu4HI GCNGC 3 cut(s) 347, 468, 788
FokI GGATG 1 cut(s) 950
Fsp4HI GCNGC 3 cut(s) 347, 468, 788
FspBI CTAG 1 cut(s) 837
FspI TGCGCA 1 cut(s) 786
GlaI GCGC 1 cut(s) 786
GluI GCNGC 3 cut(s) 347, 468, 788
GsuI CTGGAG 3 cut(s) 26, 506, 1062
HaeIII GGCC 2 cut(s) 624, 712
HapII CCGG 1 cut(s) 1191
HhaI GCGC 1 cut(s) 787
Hin1II CATG 4 cut(s) 287, 356, 556, 771
Hin6I GCGC 1 cut(s) 785
HinP1I GCGC 1 cut(s) 785
HindIII AAGCTT 1 cut(s) 184
HinfI GANTC 5 cut(s) 244, 261, 519, 565, 1160
HpaII CCGG 1 cut(s) 1191
HphI GGTGA 2 cut(s) 572, 1136
Hpy166II GTNNAC 4 cut(s) 218, 368, 854, 1144
Hpy188I TCNGA 1 cut(s) 1038
Hpy188III TCNNGA 4 cut(s) 395, 675, 863, 983
Hpy8I GTNNAC 4 cut(s) 218, 368, 854, 1144
HpyAV CCTTC 3 cut(s) 68, 404, 1174
HpyCH4III ACNGT 5 cut(s) 154, 485, 548, 858, 1141
HpyCH4V TGCA 2 cut(s) 467, 1091
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpyF3I CTNAG 4 cut(s) 76, 126, 304, 984
Hsp92II CATG 4 cut(s) 287, 356, 556, 771
HspAI GCGC 1 cut(s) 785
KpnI GGTACC 1 cut(s) 903
Ksp22I TGATCA 1 cut(s) 97
Kzo9I GATC 3 cut(s) 97, 139, 316
LmnI GCTCC 3 cut(s) 45, 59, 868
Lsp1109I GCAGC 3 cut(s) 333, 479, 799
LweI GCATC 1 cut(s) 1003
MaeI CTAG 1 cut(s) 837
MaeIII GTNAC 4 cut(s) 164, 232, 793, 920
MalI GATC 3 cut(s) 99, 141, 318
MbiI CCGCTC 1 cut(s) 107
MboI GATC 3 cut(s) 97, 139, 316
MboII GAAGA 4 cut(s) 311, 674, 1007, 1017
MlsI TGGCCA 1 cut(s) 712
MluCI AATT 8 cut(s) 82, 193, 527, 746, 843, 1003, 1126, 1216
MluNI TGGCCA 1 cut(s) 712
MlyI GAGTC 2 cut(s) 255, 513
MmeI TCCRAC 3 cut(s) 111, 167, 935
Mox20I TGGCCA 1 cut(s) 712
MscI TGGCCA 1 cut(s) 712
MseI TTAA 3 cut(s) 957, 1007, 1234
MslI CAYNNNNRTG 1 cut(s) 780
Msp20I TGGCCA 1 cut(s) 712
MspI CCGG 1 cut(s) 1191
MspR9I CCNGG 1 cut(s) 968
Mva1269I GAATGC 1 cut(s) 975
MvaI CCWGG 1 cut(s) 968
MwoI GCNNNNNNNGC 1 cut(s) 113
NdeII GATC 3 cut(s) 97, 139, 316
NlaIII CATG 4 cut(s) 287, 356, 556, 771
NlaIV GGNNCC 2 cut(s) 271, 901
NmuCI GTSAC 2 cut(s) 232, 793
NsbI TGCGCA 1 cut(s) 786
NspV TTCGAA 1 cut(s) 322
PctI GAATGC 1 cut(s) 975
PfeI GAWTC 3 cut(s) 244, 565, 1160
PkrI GCNGC 3 cut(s) 348, 469, 789
PleI GAGTC 2 cut(s) 255, 513
PpsI GAGTC 2 cut(s) 255, 513
PsiI TTATAA 1 cut(s) 741
Psp6I CCWGG 1 cut(s) 966
PspGI CCWGG 1 cut(s) 966
PspN4I GGNNCC 2 cut(s) 271, 901
PspPI GGNCC 2 cut(s) 171, 613
RsaI GTAC 2 cut(s) 390, 901
RsaNI GTAC 2 cut(s) 389, 900
RseI CAYNNNNRTG 1 cut(s) 780
SaqAI TTAA 3 cut(s) 957, 1007, 1234
SatI GCNGC 3 cut(s) 347, 468, 788
Sau3AI GATC 3 cut(s) 97, 139, 316
Sau96I GGNCC 2 cut(s) 171, 613
SchI GAGTC 2 cut(s) 255, 513
ScrFI CCNGG 1 cut(s) 968
SfaNI GCATC 1 cut(s) 1003
SfuI TTCGAA 1 cut(s) 322
SinI GGWCC 2 cut(s) 171, 613
SmiMI CAYNNNNRTG 1 cut(s) 780
SmlI CTYRAG 2 cut(s) 376, 863
SmoI CTYRAG 2 cut(s) 376, 863
Sse9I AATT 8 cut(s) 82, 193, 527, 746, 843, 1003, 1126, 1216
SsiI CCGC 1 cut(s) 105
SspI AATATT 1 cut(s) 1062
SspMI CTAG 1 cut(s) 837
StyD4I CCNGG 1 cut(s) 966
StyI CCWWGG 2 cut(s) 265, 535
TaaI ACNGT 5 cut(s) 154, 485, 548, 858, 1141
TaqI TCGA 2 cut(s) 322, 1001
TasI AATT 8 cut(s) 82, 193, 527, 746, 843, 1003, 1126, 1216
TfiI GAWTC 3 cut(s) 244, 565, 1160
Tru1I TTAA 3 cut(s) 957, 1007, 1234
Tru9I TTAA 3 cut(s) 957, 1007, 1234
TscAI CASTG 2 cut(s) 100, 757
TseFI GTSAC 2 cut(s) 232, 793
TseI GCWGC 3 cut(s) 346, 467, 787
Tsp45I GTSAC 2 cut(s) 232, 793
TspDTI ATGAA 4 cut(s) 325, 369, 579, 1119
TspGWI ACGGA 1 cut(s) 558
TspRI CASTG 2 cut(s) 100, 757
VpaK11BI GGWCC 2 cut(s) 171, 613
XapI RAATTY 3 cut(s) 746, 1003, 1216
XcmI CCANNNNNNNNNTGG 1 cut(s) 154
XmiI GTMKAC 1 cut(s) 367
XspI CTAG 1 cut(s) 837
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.