RchiOBHm_Chr5g0040141

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
34849109 .. 34849720
612 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31866

Sequence Viewer

Length: 612 bp
ATGGAGAGAACTTGGTTCTTCCTGGTATGCTGCTTTTCTATAGCGGTAGCAGCACATACCAATAGTAATCTCACCACAGACCAGTCTGCTCTTCTTGCTCTCAAATCCCGTGTCACCAGTGATCCTAACATGATCTTGACCAACTGGTCTACCAACACCCCTACTTGCACTTGGATTGGTGTTACTTGTGGCGCAAACCACTTCAGAGTTGCAGTCTTGAACCTCTCTTACATGGGCCTCACAGGCACTATTCCTCCGGATCTTGGCAACCTCTCATTTCTTGTTGAGTTGCGTTTCGCAAATAACAGTTTTCATGGTCACTTGCCTGAAGAATTGGCTCGTTTGCACCAGTTAAAGTTGATTGGCTTAGCATACAACAGCTTTAGCGGACTCATTCCATCATGGTTCGGGTCCTTGTCCAAACTTCAAACGTTCAATTTGACTGGTAATCAGTTTTCAGGTTCCATACCCTCTGCCATTTTCAACTTATCTGCACTGGAAGTCATTAATTTGAGCCATAACCAACTATCAGGTACGTCTAACAAACCTACCAACAAGTTATCAGGGACGTTCATTATGTACACTTTAATATTCTACGTAATTATGGTATAA

Protein Analysis

203

Amino Acids

22.31

Weight (kDa)

8.42

Isoelectric Point (pI)

17.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 26 - 63 3.1e-10 Leucine rich repeat N-terminal domain
LRR_14 PF23598 73 - 175 6.9e-07 Leucine-rich repeat region
LRR_8 PF13855 117 - 176 6.9e-11 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 145
AccI GTMKAC 1 cut(s) 149
AccIII TCCGGA 1 cut(s) 256
AciI CCGC 2 cut(s) 44, 387
AclI AACGTT 1 cut(s) 431
AclWI GGATC 2 cut(s) 116, 267
AcuI CTGAAG 2 cut(s) 187, 348
AfaI GTAC 2 cut(s) 535, 581
AfiI CCNNNNNNNGG 1 cut(s) 263
AgsI TTSAA 4 cut(s) 220, 428, 436, 484
AjnI CCWGG 1 cut(s) 21
AluBI AGCT 1 cut(s) 381
AluI AGCT 1 cut(s) 381
AlwI GGATC 2 cut(s) 116, 267
Aor13HI TCCGGA 1 cut(s) 256
AoxI GGCC 1 cut(s) 235
ApeKI GCWGC 2 cut(s) 30, 50
ArsI GACNNNNNNTTYG 2 cut(s) 96, 128
AseI ATTAAT 1 cut(s) 507
AspLEI GCGC 1 cut(s) 194
AspS9I GGNCC 2 cut(s) 235, 411
AsuHPI GGTGA 2 cut(s) 64, 106
AvaII GGWCC 1 cut(s) 411
BbvI GCAGC 2 cut(s) 17, 62
BccI CCATC 1 cut(s) 406
BciT130I CCWGG 1 cut(s) 23
BfmI CTRYAG 1 cut(s) 39
BglI GCCNNNNNGGC 1 cut(s) 243
BisI GCNGC 2 cut(s) 31, 51
BlpI GCTNAGC 1 cut(s) 367
BlsI GCNGC 2 cut(s) 32, 52
Bme1390I CCNGG 1 cut(s) 23
Bme18I GGWCC 1 cut(s) 411
BmgT120I GGNCC 2 cut(s) 235, 411
BmiI GGNNCC 2 cut(s) 412, 463
BmrFI CCNGG 1 cut(s) 23
Bpu1102I GCTNAGC 1 cut(s) 367
BsaAI YACGTR 1 cut(s) 598
BsaWI WCCGGW 1 cut(s) 256
BsaXI ACNNNNNCTCC 2 cut(s) 238, 268
Bsc4I CCNNNNNNNGG 1 cut(s) 263
Bse1I ACTGG 6 cut(s) 82, 117, 149, 349, 448, 501
BseAI TCCGGA 1 cut(s) 256
BseBI CCWGG 1 cut(s) 23
BseLI CCNNNNNNNGG 1 cut(s) 263
BseNI ACTGG 6 cut(s) 82, 117, 149, 349, 448, 501
BseXI GCAGC 2 cut(s) 17, 62
BsgI GTGCAG 1 cut(s) 477
BshFI GGCC 1 cut(s) 237
BsiSI CCGG 1 cut(s) 257
BslFI GGGAC 1 cut(s) 580
BslI CCNNNNNNNGG 1 cut(s) 263
BsmFI GGGAC 1 cut(s) 580
BsnI GGCC 1 cut(s) 237
Bsp13I TCCGGA 1 cut(s) 256
Bsp1407I TGTACA 1 cut(s) 579
Bsp143I GATC 3 cut(s) 121, 132, 259
Bsp1720I GCTNAGC 1 cut(s) 367
BspACI CCGC 2 cut(s) 44, 387
BspANI GGCC 1 cut(s) 237
BspEI TCCGGA 1 cut(s) 256
BspLI GGNNCC 2 cut(s) 412, 463
BspPI GGATC 2 cut(s) 116, 267
BspQI GCTCTTC 1 cut(s) 96
BsrGI TGTACA 1 cut(s) 579
BsrI ACTGG 6 cut(s) 82, 117, 149, 349, 448, 501
BssMI GATC 3 cut(s) 121, 132, 259
Bst2UI CCWGG 1 cut(s) 23
Bst4CI ACNGT 1 cut(s) 308
Bst6I CTCTTC 1 cut(s) 96
BstAUI TGTACA 1 cut(s) 579
BstBAI YACGTR 1 cut(s) 598
BstDEI CTNAG 1 cut(s) 367
BstHHI GCGC 1 cut(s) 194
BstKTI GATC 3 cut(s) 124, 135, 262
BstMBI GATC 3 cut(s) 121, 132, 259
BstMWI GCNNNNNNNGC 3 cut(s) 50, 95, 243
BstNI CCWGG 1 cut(s) 23
BstSCI CCNGG 1 cut(s) 21
BstSFI CTRYAG 1 cut(s) 39
BstSNI TACGTA 1 cut(s) 598
BstV1I GCAGC 2 cut(s) 17, 62
BstX2I RGATCY 1 cut(s) 259
BstYI RGATCY 1 cut(s) 259
BsuRI GGCC 1 cut(s) 237
BtsIMutI CAGTG 2 cut(s) 124, 494
CfoI GCGC 1 cut(s) 194
Cfr13I GGNCC 2 cut(s) 235, 411
Csp6I GTAC 2 cut(s) 534, 580
CviAII CATG 4 cut(s) 130, 232, 314, 402
CviJI RGCY 5 cut(s) 237, 338, 366, 381, 516
CviKI_1 RGCY 5 cut(s) 237, 338, 366, 381, 516
CviQI GTAC 2 cut(s) 534, 580
DdeI CTNAG 1 cut(s) 367
DpnI GATC 3 cut(s) 123, 134, 261
DpnII GATC 3 cut(s) 121, 132, 259
DrdI GACNNNNNNGTC 1 cut(s) 145
DseDI GACNNNNNNGTC 1 cut(s) 145
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
Eco105I TACGTA 1 cut(s) 598
Eco47I GGWCC 1 cut(s) 411
Eco57I CTGAAG 2 cut(s) 187, 348
EcoO109I RGGNCCY 1 cut(s) 411
EcoRII CCWGG 1 cut(s) 21
FaeI CATG 4 cut(s) 133, 235, 317, 405
FaqI GGGAC 1 cut(s) 580
FatI CATG 4 cut(s) 129, 231, 313, 401
FblI GTMKAC 1 cut(s) 149
Fnu4HI GCNGC 2 cut(s) 31, 51
Fsp4HI GCNGC 2 cut(s) 31, 51
GlaI GCGC 1 cut(s) 193
GluI GCNGC 2 cut(s) 31, 51
HaeIII GGCC 1 cut(s) 237
HapII CCGG 1 cut(s) 257
HhaI GCGC 1 cut(s) 194
Hin1II CATG 4 cut(s) 133, 235, 317, 405
Hin6I GCGC 1 cut(s) 192
HinP1I GCGC 1 cut(s) 192
HinfI GANTC 1 cut(s) 390
HpaII CCGG 1 cut(s) 257
HphI GGTGA 2 cut(s) 64, 106
Hpy166II GTNNAC 2 cut(s) 150, 582
Hpy188I TCNGA 1 cut(s) 206
Hpy188III TCNNGA 3 cut(s) 136, 217, 257
Hpy8I GTNNAC 2 cut(s) 150, 582
HpyCH4III ACNGT 1 cut(s) 308
HpyCH4IV ACGT 4 cut(s) 431, 536, 569, 597
HpyCH4V TGCA 4 cut(s) 168, 212, 346, 494
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 95, 243
HpyF3I CTNAG 1 cut(s) 367
HpySE526I ACGT 4 cut(s) 431, 536, 569, 597
Hsp92II CATG 4 cut(s) 133, 235, 317, 405
HspAI GCGC 1 cut(s) 192
Kpn2I TCCGGA 1 cut(s) 256
Kzo9I GATC 3 cut(s) 121, 132, 259
LguI GCTCTTC 1 cut(s) 96
Lsp1109I GCAGC 2 cut(s) 17, 62
MaeII ACGT 4 cut(s) 431, 536, 569, 597
MaeIII GTNAC 3 cut(s) 112, 181, 317
MalI GATC 3 cut(s) 123, 134, 261
MboI GATC 3 cut(s) 121, 132, 259
MboII GAAGA 3 cut(s) 10, 83, 341
MflI RGATCY 1 cut(s) 259
MluCI AATT 4 cut(s) 332, 436, 508, 600
MlyI GAGTC 1 cut(s) 384
MnlI CCTC 5 cut(s) 233, 248, 264, 281, 481
MroI TCCGGA 1 cut(s) 256
MseI TTAA 3 cut(s) 353, 507, 587
MspI CCGG 1 cut(s) 257
MspR9I CCNGG 1 cut(s) 23
MvaI CCWGG 1 cut(s) 23
MwoI GCNNNNNNNGC 3 cut(s) 50, 95, 243
NdeII GATC 3 cut(s) 121, 132, 259
NlaIII CATG 4 cut(s) 133, 235, 317, 405
NlaIV GGNNCC 2 cut(s) 412, 463
NmuCI GTSAC 2 cut(s) 112, 317
PciSI GCTCTTC 1 cut(s) 96
PkrI GCNGC 2 cut(s) 32, 52
PleI GAGTC 1 cut(s) 384
PpsI GAGTC 1 cut(s) 384
Ppu21I YACGTR 1 cut(s) 598
PpuMI RGGWCCY 1 cut(s) 411
PshBI ATTAAT 1 cut(s) 507
Psp1406I AACGTT 1 cut(s) 431
Psp5II RGGWCCY 1 cut(s) 411
Psp6I CCWGG 1 cut(s) 21
PspGI CCWGG 1 cut(s) 21
PspN4I GGNNCC 2 cut(s) 412, 463
PspPI GGNCC 2 cut(s) 235, 411
PspPPI RGGWCCY 1 cut(s) 411
PsrI GAACNNNNNNTAC 2 cut(s) 212, 244
PsuI RGATCY 1 cut(s) 259
RsaI GTAC 2 cut(s) 535, 581
RsaNI GTAC 2 cut(s) 534, 580
SapI GCTCTTC 1 cut(s) 96
SaqAI TTAA 3 cut(s) 353, 507, 587
SatI GCNGC 2 cut(s) 31, 51
Sau3AI GATC 3 cut(s) 121, 132, 259
Sau96I GGNCC 2 cut(s) 235, 411
SchI GAGTC 1 cut(s) 384
ScrFI CCNGG 1 cut(s) 23
SfcI CTRYAG 1 cut(s) 39
SinI GGWCC 1 cut(s) 411
SnaBI TACGTA 1 cut(s) 598
Sse9I AATT 4 cut(s) 332, 436, 508, 600
SsiI CCGC 2 cut(s) 44, 387
SspI AATATT 1 cut(s) 591
StyD4I CCNGG 1 cut(s) 21
TaaI ACNGT 1 cut(s) 308
TaiI ACGT 4 cut(s) 434, 539, 572, 600
TasI AATT 4 cut(s) 332, 436, 508, 600
TatI WGTACW 1 cut(s) 579
Tru1I TTAA 3 cut(s) 353, 507, 587
Tru9I TTAA 3 cut(s) 353, 507, 587
TscAI CASTG 2 cut(s) 124, 501
TseFI GTSAC 2 cut(s) 112, 317
TseI GCWGC 2 cut(s) 30, 50
Tsp45I GTSAC 2 cut(s) 112, 317
TspDTI ATGAA 2 cut(s) 302, 562
TspRI CASTG 2 cut(s) 124, 501
VpaK11BI GGWCC 1 cut(s) 411
VspI ATTAAT 1 cut(s) 507
XmiI GTMKAC 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.