RchiOBHm_Chr7g0213311

Leucine rich repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000229
Physical Location & Seq
Reverse (-)
30434613 .. 30435896
1284 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19092

Sequence Viewer

Length: 915 bp
ATGAGGCCAAAAATATGCTCTCTCAGCCTTGTAAGCCTTAGCTACTCTATTAATGATGTTGTTTGGTTGAAACTAAAAGGTAGCATACCAAGAGAAATCGGGAACTTAACAATGCTGAAGGAGATAATCCTTGATGGTAACAACTTCAAAGGTATGGCTTGGATTTGTTTGCAGTGCAGTGTACCTGCTGATTTTCCAGGAATTCCAAACGAGATCGGCACTTTAGCTCAGCTGGAGGTGTTGAATGTGCAAGACAATGCACTAAATGGTCCTTTGCCTGTTGCTGTCTTCAACTTGTCTTCTTTGACCCAAATGGGACTAACAAAGAACAACTTGACTGGTAGTATTCCAGACAATATATGTGAAAACCTTCCCAGTATTCAAGCACTTTTTTTGTCTTACAACCAGTTTGATGGTCCACTTCCATCCAAATTATGGCAATGCAAAGAGCTTCTCTATTTATCACTGTCATTTAACAAATTCAGTGGAGGCATACCCAGAAATATTGGGAACTTGACCAGTTTAACGCATATATATCTTGCGGCAAACAATTTGCAAGGTACTATACCACATGAGATTGGTGATCTTTCAAAATTACAGGTTTTGTCACTTCCAGGTGTTAATGTTCATGGTGTTATCCCATCCACAATCTTCAACATGTCCTCGCTGATAGGAATATCGCTGGCTAGTAATCAGCTCTCAGGTAGCCTCCCAGCAAACATAGGCCTTGGGGTTCCACATCTAAAGCAGCTTCTTGTATCAGGGAATAACCTCACTGGAGCAATTCCAAACTTCATATCTAATGCCTCTAACATCATAACCATAGACATGGCCACTAACCATTTTTCGGGGTTTATTCCTAGCAAGCTCTGTGCCTTACCATACCTTGAGCGCCTAAACATAGCAGAGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04626 map04016 map04626
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

304

Amino Acids

32.69

Weight (kDa)

6.5

Isoelectric Point (pI)

30.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 114 - 301 2.6e-09 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 193
AccB7I CCANNNNNTGG 1 cut(s) 435
AciI CCGC 1 cut(s) 542
AcoI YGGCCR 1 cut(s) 831
AcsI RAATTY 2 cut(s) 201, 479
AcuI CTGAAG 1 cut(s) 137
AfaI GTAC 2 cut(s) 183, 562
AfiI CCNNNNNNNGG 2 cut(s) 435, 847
AflIII ACRYGT 1 cut(s) 657
AgsI TTSAA 7 cut(s) 70, 148, 244, 292, 383, 591, 655
AjnI CCWGG 2 cut(s) 196, 613
AluBI AGCT 7 cut(s) 42, 227, 232, 451, 697, 751, 868
AluI AGCT 7 cut(s) 42, 227, 232, 451, 697, 751, 868
AoxI GGCC 3 cut(s) 5, 724, 831
ApeKI GCWGC 1 cut(s) 748
ApoI RAATTY 2 cut(s) 201, 479
AseI ATTAAT 1 cut(s) 51
Asp700I GAANNNNTTC 1 cut(s) 369
AspLEI GCGC 1 cut(s) 894
AspS9I GGNCC 2 cut(s) 269, 416
AsuHPI GGTGA 1 cut(s) 593
AvaII GGWCC 2 cut(s) 269, 416
BalI TGGCCA 1 cut(s) 833
BbsI GAAGAC 2 cut(s) 280, 291
BbvI GCAGC 1 cut(s) 760
BccI CCATC 4 cut(s) 128, 407, 433, 649
BciT130I CCWGG 2 cut(s) 198, 615
BfaI CTAG 2 cut(s) 687, 861
BfoI RGCGCY 1 cut(s) 895
BfuAI ACCTGC 1 cut(s) 193
BisI GCNGC 2 cut(s) 543, 749
BlpI GCTNAGC 1 cut(s) 228
BlsI GCNGC 2 cut(s) 544, 750
Bme1390I CCNGG 2 cut(s) 198, 615
Bme18I GGWCC 2 cut(s) 269, 416
BmgT120I GGNCC 2 cut(s) 269, 416
BmiI GGNNCC 1 cut(s) 735
BmrFI CCNGG 2 cut(s) 198, 615
BmrI ACTGGG 1 cut(s) 369
BmuI ACTGGG 1 cut(s) 369
BpiI GAAGAC 2 cut(s) 280, 291
BpmI CTGGAG 2 cut(s) 254, 798
Bpu10I CCTNAGC 1 cut(s) 38
Bpu1102I GCTNAGC 1 cut(s) 228
BpuEI CTTGAG 1 cut(s) 908
BsaJI CCNNGG 1 cut(s) 727
Bsc4I CCNNNNNNNGG 2 cut(s) 435, 847
Bse1I ACTGG 5 cut(s) 343, 375, 406, 519, 781
Bse3DI GCAATG 1 cut(s) 446
BseBI CCWGG 2 cut(s) 198, 615
BseDI CCNNGG 1 cut(s) 727
BseGI GGATG 2 cut(s) 425, 641
BseLI CCNNNNNNNGG 2 cut(s) 435, 847
BseMI GCAATG 1 cut(s) 446
BseMII CTCAG 3 cut(s) 37, 242, 714
BseNI ACTGG 5 cut(s) 343, 375, 406, 519, 781
BseXI GCAGC 1 cut(s) 760
BseYI CCCAGC 1 cut(s) 712
BsgI GTGCAG 1 cut(s) 196
BshFI GGCC 3 cut(s) 7, 726, 833
BslFI GGGAC 1 cut(s) 330
BslI CCNNNNNNNGG 2 cut(s) 435, 847
BsmFI GGGAC 1 cut(s) 330
BsnI GGCC 3 cut(s) 7, 726, 833
Bsp143I GATC 2 cut(s) 213, 583
Bsp1720I GCTNAGC 1 cut(s) 228
BspACI CCGC 1 cut(s) 542
BspANI GGCC 3 cut(s) 7, 726, 833
BspCNI CTCAG 3 cut(s) 36, 241, 713
BspLI GGNNCC 1 cut(s) 735
BspMI ACCTGC 1 cut(s) 193
BsrDI GCAATG 1 cut(s) 446
BsrI ACTGG 5 cut(s) 343, 375, 406, 519, 781
BssECI CCNNGG 1 cut(s) 727
BssMI GATC 2 cut(s) 213, 583
BssT1I CCWWGG 1 cut(s) 727
Bst2UI CCWGG 2 cut(s) 198, 615
Bst4CI ACNGT 1 cut(s) 468
BstC8I GCNNGC 2 cut(s) 684, 866
BstDEI CTNAG 4 cut(s) 23, 38, 228, 700
BstF5I GGATG 2 cut(s) 425, 641
BstH2I RGCGCY 1 cut(s) 895
BstHHI GCGC 1 cut(s) 894
BstKTI GATC 2 cut(s) 216, 586
BstMBI GATC 2 cut(s) 213, 583
BstMWI GCNNNNNNNGC 2 cut(s) 24, 33
BstNI CCWGG 2 cut(s) 198, 615
BstNSI RCATGY 1 cut(s) 661
BstSCI CCNGG 2 cut(s) 196, 613
BstV1I GCAGC 1 cut(s) 760
BstV2I GAAGAC 2 cut(s) 280, 291
BstXI CCANNNNNNTGG 2 cut(s) 413, 829
BsuRI GGCC 3 cut(s) 7, 726, 833
BtsCI GGATG 2 cut(s) 425, 641
BtsI GCAGTG 2 cut(s) 179, 184
BtsIMutI CAGTG 5 cut(s) 179, 184, 464, 490, 774
BveI ACCTGC 1 cut(s) 193
Cac8I GCNNGC 2 cut(s) 684, 866
CfoI GCGC 1 cut(s) 894
Cfr13I GGNCC 2 cut(s) 269, 416
Csp6I GTAC 2 cut(s) 182, 561
CspCI CAANNNNNGTGG 2 cut(s) 466, 501
CviAII CATG 4 cut(s) 572, 629, 658, 829
CviQI GTAC 2 cut(s) 182, 561
DdeI CTNAG 4 cut(s) 23, 38, 228, 700
DpnI GATC 2 cut(s) 215, 585
DpnII GATC 2 cut(s) 213, 583
EaeI YGGCCR 1 cut(s) 831
Eco130I CCWWGG 1 cut(s) 727
Eco147I AGGCCT 1 cut(s) 726
Eco47I GGWCC 2 cut(s) 269, 416
Eco57I CTGAAG 1 cut(s) 137
EcoRI GAATTC 1 cut(s) 201
EcoRII CCWGG 2 cut(s) 196, 613
EcoT14I CCWWGG 1 cut(s) 727
ErhI CCWWGG 1 cut(s) 727
FaeI CATG 4 cut(s) 575, 632, 661, 832
FalI AAGNNNNNCTT 2 cut(s) 317, 349
FaqI GGGAC 1 cut(s) 330
FatI CATG 4 cut(s) 571, 628, 657, 828
Fnu4HI GCNGC 2 cut(s) 543, 749
FokI GGATG 2 cut(s) 412, 628
Fsp4HI GCNGC 2 cut(s) 543, 749
FspBI CTAG 2 cut(s) 687, 861
GlaI GCGC 1 cut(s) 893
GluI GCNGC 2 cut(s) 543, 749
GsaI CCCAGC 1 cut(s) 716
GsuI CTGGAG 2 cut(s) 254, 798
HaeII RGCGCY 1 cut(s) 895
HaeIII GGCC 3 cut(s) 7, 726, 833
HhaI GCGC 1 cut(s) 894
Hin1II CATG 4 cut(s) 575, 632, 661, 832
Hin6I GCGC 1 cut(s) 892
HinP1I GCGC 1 cut(s) 892
HphI GGTGA 1 cut(s) 593
Hpy166II GTNNAC 2 cut(s) 182, 419
Hpy188III TCNNGA 2 cut(s) 100, 350
Hpy8I GTNNAC 2 cut(s) 182, 419
HpyAV CCTTC 2 cut(s) 112, 380
HpyCH4III ACNGT 1 cut(s) 468
HpyCH4V TGCA 6 cut(s) 172, 177, 250, 260, 444, 556
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 33
HpyF3I CTNAG 4 cut(s) 23, 38, 228, 700
Hsp92II CATG 4 cut(s) 575, 632, 661, 832
HspAI GCGC 1 cut(s) 892
Kzo9I GATC 2 cut(s) 213, 583
LmnI GCTCC 1 cut(s) 779
Lsp1109I GCAGC 1 cut(s) 760
MaeI CTAG 2 cut(s) 687, 861
MaeIII GTNAC 2 cut(s) 137, 606
MalI GATC 2 cut(s) 215, 585
MboI GATC 2 cut(s) 213, 583
MboII GAAGA 3 cut(s) 280, 291, 643
MlsI TGGCCA 1 cut(s) 833
MluCI AATT 7 cut(s) 201, 431, 479, 550, 593, 783, 910
MluNI TGGCCA 1 cut(s) 833
MnlI CCTC 6 cut(s) 229, 482, 673, 719, 782, 817
Mox20I TGGCCA 1 cut(s) 833
MroXI GAANNNNTTC 1 cut(s) 369
MscI TGGCCA 1 cut(s) 833
MseI TTAA 6 cut(s) 51, 107, 474, 524, 621, 913
MslI CAYNNNNRTG 1 cut(s) 827
Msp20I TGGCCA 1 cut(s) 833
MspA1I CMGCKG 1 cut(s) 232
MspR9I CCNGG 2 cut(s) 198, 615
MvaI CCWGG 2 cut(s) 198, 615
MwoI GCNNNNNNNGC 2 cut(s) 24, 33
NdeII GATC 2 cut(s) 213, 583
NlaIII CATG 4 cut(s) 575, 632, 661, 832
NlaIV GGNNCC 1 cut(s) 735
NmuCI GTSAC 1 cut(s) 606
NspI RCATGY 1 cut(s) 661
PceI AGGCCT 1 cut(s) 726
PciI ACATGT 1 cut(s) 657
PdmI GAANNNNTTC 1 cut(s) 369
PflMI CCANNNNNTGG 1 cut(s) 435
PfoI TCCNGGA 1 cut(s) 196
PkrI GCNGC 2 cut(s) 544, 750
PscI ACATGT 1 cut(s) 657
PshBI ATTAAT 1 cut(s) 51
Psp6I CCWGG 2 cut(s) 196, 613
PspFI CCCAGC 1 cut(s) 712
PspGI CCWGG 2 cut(s) 196, 613
PspN4I GGNNCC 1 cut(s) 735
PspPI GGNCC 2 cut(s) 269, 416
PvuII CAGCTG 1 cut(s) 232
RsaI GTAC 2 cut(s) 183, 562
RsaNI GTAC 2 cut(s) 182, 561
RseI CAYNNNNRTG 1 cut(s) 827
SaqAI TTAA 6 cut(s) 51, 107, 474, 524, 621, 913
SatI GCNGC 2 cut(s) 543, 749
Sau3AI GATC 2 cut(s) 213, 583
Sau96I GGNCC 2 cut(s) 269, 416
ScrFI CCNGG 2 cut(s) 198, 615
SinI GGWCC 2 cut(s) 269, 416
SmiMI CAYNNNNRTG 1 cut(s) 827
SmlI CTYRAG 1 cut(s) 887
SmoI CTYRAG 1 cut(s) 887
Sse9I AATT 7 cut(s) 201, 431, 479, 550, 593, 783, 910
SseBI AGGCCT 1 cut(s) 726
SsiI CCGC 1 cut(s) 542
SspI AATATT 1 cut(s) 505
SspMI CTAG 2 cut(s) 687, 861
StuI AGGCCT 1 cut(s) 726
StyD4I CCNGG 2 cut(s) 196, 613
StyI CCWWGG 1 cut(s) 727
TaaI ACNGT 1 cut(s) 468
TasI AATT 7 cut(s) 201, 431, 479, 550, 593, 783, 910
TauI GCSGC 1 cut(s) 545
Tru1I TTAA 6 cut(s) 51, 107, 474, 524, 621, 913
Tru9I TTAA 6 cut(s) 51, 107, 474, 524, 621, 913
TscAI CASTG 5 cut(s) 179, 184, 471, 490, 781
TseFI GTSAC 1 cut(s) 606
TseI GCWGC 1 cut(s) 748
Tsp45I GTSAC 1 cut(s) 606
TspDTI ATGAA 2 cut(s) 617, 784
TspRI CASTG 5 cut(s) 179, 184, 471, 490, 781
Van91I CCANNNNNTGG 1 cut(s) 435
VpaK11BI GGWCC 2 cut(s) 269, 416
VspI ATTAAT 1 cut(s) 51
XapI RAATTY 2 cut(s) 201, 479
XceI RCATGY 1 cut(s) 661
XcmI CCANNNNNNNNNTGG 1 cut(s) 432
XmnI GAANNNNTTC 1 cut(s) 369
XspI CTAG 2 cut(s) 687, 861
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.