RchiOBHm_Chr5g0011321

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000229
Physical Location & Seq
Reverse (-)
7495386 .. 7495889
504 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29201

Sequence Viewer

Length: 504 bp
ATGGCAGCTATCTTAACTGTAGCAGCACAAACGACCAACATTAGCACAGACCAGTCTGCTCTTCTTGCTCTCAAATCCCATATCACTAATGACCCTCATAACAAGATCTTCACCAACTGGTCAACCACAACTGCTGTTTGCAACTGGGTTGGTGTGACATGTGGTGCTCCTCATCATCGTGTCACAGTCTTGAACCTCACCAACATGAAACTCACAGGCACCATTCCTCTGCAGCTAAGCAACCTTTCTTTTCTTGTTAGGTTAAGCTTTAAAAATAACAGTTTTCATGGTACATTGCCTCTAGAATTAGGTCATTTGCGTAGATTGAAGGGGATTGATTTCACATACAACAATTTTAAAGGAATCATTTCATCATGGTTTGGGTCCTTATCCAAACTTCAAAATGGCAATAAATTTTCAAGTTCCATATCAACGACCATCTTCAACTTATCAGCACTCGAAATAATTAATTTGAGCTTTAACCGTCTATCAGGTACGAACTAA

Protein Analysis

167

Amino Acids

18.31

Weight (kDa)

10.11

Isoelectric Point (pI)

19.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 15 - 54 4.4e-12 Leucine rich repeat N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 218
AcsI RAATTY 1 cut(s) 413
AfaI GTAC 2 cut(s) 292, 496
AflIII ACRYGT 1 cut(s) 158
AgsI TTSAA 5 cut(s) 193, 328, 401, 420, 445
AluBI AGCT 4 cut(s) 8, 235, 267, 477
AluI AGCT 4 cut(s) 8, 235, 267, 477
Alw21I GWGCWC 1 cut(s) 169
ApeKI GCWGC 3 cut(s) 5, 23, 232
ApoI RAATTY 1 cut(s) 413
AseI ATTAAT 1 cut(s) 468
Asp700I GAANNNNTTC 1 cut(s) 367
AspS9I GGNCC 1 cut(s) 384
AsuHPI GGTGA 2 cut(s) 103, 190
AvaII GGWCC 1 cut(s) 384
BanI GGYRCC 1 cut(s) 218
Bbv12I GWGCWC 1 cut(s) 169
BbvI GCAGC 3 cut(s) 17, 35, 244
BccI CCATC 1 cut(s) 446
BfaI CTAG 1 cut(s) 302
BfmI CTRYAG 2 cut(s) 18, 230
BglII AGATCT 1 cut(s) 105
BisI GCNGC 3 cut(s) 6, 24, 233
BlpI GCTNAGC 1 cut(s) 236
BlsI GCNGC 3 cut(s) 7, 25, 234
Bme18I GGWCC 1 cut(s) 384
BmgT120I GGNCC 1 cut(s) 384
BmiI GGNNCC 2 cut(s) 220, 385
BmrI ACTGGG 1 cut(s) 154
BmuI ACTGGG 1 cut(s) 154
Bpu1102I GCTNAGC 1 cut(s) 236
Bse1I ACTGG 3 cut(s) 52, 122, 149
Bse3DI GCAATG 1 cut(s) 293
BseMI GCAATG 1 cut(s) 293
BseNI ACTGG 3 cut(s) 52, 122, 149
BseRI GAGGAG 1 cut(s) 159
BseXI GCAGC 3 cut(s) 17, 35, 244
BshNI GGYRCC 1 cut(s) 218
BsiHKAI GWGCWC 1 cut(s) 169
Bsp1286I GDGCHC 1 cut(s) 169
Bsp143I GATC 1 cut(s) 105
Bsp1720I GCTNAGC 1 cut(s) 236
BspLI GGNNCC 2 cut(s) 220, 385
BspMAI CTGCAG 1 cut(s) 234
BspQI GCTCTTC 1 cut(s) 66
BspT107I GGYRCC 1 cut(s) 218
BsrDI GCAATG 1 cut(s) 293
BsrI ACTGG 3 cut(s) 52, 122, 149
BssMI GATC 1 cut(s) 105
Bst4CI ACNGT 4 cut(s) 19, 187, 281, 485
Bst6I CTCTTC 1 cut(s) 66
BstDEI CTNAG 1 cut(s) 236
BstKTI GATC 1 cut(s) 108
BstMBI GATC 1 cut(s) 105
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstNSI RCATGY 1 cut(s) 162
BstSFI CTRYAG 2 cut(s) 18, 230
BstV1I GCAGC 3 cut(s) 17, 35, 244
BstX2I RGATCY 1 cut(s) 105
BstYI RGATCY 1 cut(s) 105
Cfr13I GGNCC 1 cut(s) 384
Csp6I GTAC 2 cut(s) 291, 495
CviAII CATG 4 cut(s) 159, 205, 287, 375
CviJI RGCY 4 cut(s) 8, 235, 267, 477
CviKI_1 RGCY 4 cut(s) 8, 235, 267, 477
CviQI GTAC 2 cut(s) 291, 495
DdeI CTNAG 1 cut(s) 236
DpnI GATC 1 cut(s) 107
DpnII GATC 1 cut(s) 105
DraI TTTAAA 2 cut(s) 271, 358
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Eco47I GGWCC 1 cut(s) 384
EcoO109I RGGNCCY 1 cut(s) 384
FaeI CATG 4 cut(s) 162, 208, 290, 378
FaiI YATR 8 cut(s) 81, 99, 160, 206, 288, 346, 376, 428
FatI CATG 4 cut(s) 158, 204, 286, 374
Fnu4HI GCNGC 3 cut(s) 6, 24, 233
Fsp4HI GCNGC 3 cut(s) 6, 24, 233
FspBI CTAG 1 cut(s) 302
GluI GCNGC 3 cut(s) 6, 24, 233
Hin1II CATG 4 cut(s) 162, 208, 290, 378
HincII GTYRAC 1 cut(s) 123
HindII GTYRAC 1 cut(s) 123
HindIII AAGCTT 1 cut(s) 265
HinfI GANTC 1 cut(s) 363
HphI GGTGA 2 cut(s) 103, 190
Hpy166II GTNNAC 1 cut(s) 123
Hpy188III TCNNGA 2 cut(s) 190, 302
Hpy8I GTNNAC 1 cut(s) 123
HpyAV CCTTC 1 cut(s) 322
HpyCH4III ACNGT 4 cut(s) 19, 187, 281, 485
HpyCH4V TGCA 2 cut(s) 141, 232
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpyF3I CTNAG 1 cut(s) 236
Hsp92II CATG 4 cut(s) 162, 208, 290, 378
Kzo9I GATC 1 cut(s) 105
LguI GCTCTTC 1 cut(s) 66
LmnI GCTCC 1 cut(s) 172
LpnPI CCDG 5 cut(s) 65, 103, 130, 201, 477
Lsp1109I GCAGC 3 cut(s) 17, 35, 244
MaeI CTAG 1 cut(s) 302
MaeIII GTNAC 2 cut(s) 154, 181
MalI GATC 1 cut(s) 107
MboI GATC 1 cut(s) 105
MboII GAAGA 3 cut(s) 53, 100, 433
MflI RGATCY 1 cut(s) 105
MhlI GDGCHC 1 cut(s) 169
MluCI AATT 5 cut(s) 305, 352, 413, 465, 469
MnlI CCTC 5 cut(s) 105, 180, 206, 237, 309
MroXI GAANNNNTTC 1 cut(s) 367
MseI TTAA 6 cut(s) 14, 263, 270, 357, 468, 480
MslI CAYNNNNRTG 2 cut(s) 177, 203
MwoI GCNNNNNNNGC 1 cut(s) 65
NdeII GATC 1 cut(s) 105
NlaIII CATG 4 cut(s) 162, 208, 290, 378
NlaIV GGNNCC 2 cut(s) 220, 385
NmuCI GTSAC 2 cut(s) 154, 181
NspI RCATGY 1 cut(s) 162
PciI ACATGT 1 cut(s) 158
PciSI GCTCTTC 1 cut(s) 66
PdmI GAANNNNTTC 1 cut(s) 367
PfeI GAWTC 1 cut(s) 363
PkrI GCNGC 3 cut(s) 7, 25, 234
PpuMI RGGWCCY 1 cut(s) 384
PscI ACATGT 1 cut(s) 158
PshBI ATTAAT 1 cut(s) 468
Psp5II RGGWCCY 1 cut(s) 384
PspN4I GGNNCC 2 cut(s) 220, 385
PspPI GGNCC 1 cut(s) 384
PspPPI RGGWCCY 1 cut(s) 384
PstI CTGCAG 1 cut(s) 234
PsuI RGATCY 1 cut(s) 105
RsaI GTAC 2 cut(s) 292, 496
RsaNI GTAC 2 cut(s) 291, 495
RseI CAYNNNNRTG 2 cut(s) 177, 203
SapI GCTCTTC 1 cut(s) 66
SaqAI TTAA 6 cut(s) 14, 263, 270, 357, 468, 480
SatI GCNGC 3 cut(s) 6, 24, 233
Sau3AI GATC 1 cut(s) 105
Sau96I GGNCC 1 cut(s) 384
SduI GDGCHC 1 cut(s) 169
SetI ASST 9 cut(s) 10, 198, 237, 246, 263, 269, 313, 479, 496
SfcI CTRYAG 2 cut(s) 18, 230
SinI GGWCC 1 cut(s) 384
SmiMI CAYNNNNRTG 2 cut(s) 177, 203
Sse9I AATT 5 cut(s) 305, 352, 413, 465, 469
SspMI CTAG 1 cut(s) 302
TaaI ACNGT 4 cut(s) 19, 187, 281, 485
TaqI TCGA 1 cut(s) 459
TasI AATT 5 cut(s) 305, 352, 413, 465, 469
TfiI GAWTC 1 cut(s) 363
Tru1I TTAA 6 cut(s) 14, 263, 270, 357, 468, 480
Tru9I TTAA 6 cut(s) 14, 263, 270, 357, 468, 480
TseFI GTSAC 2 cut(s) 154, 181
TseI GCWGC 3 cut(s) 5, 23, 232
Tsp45I GTSAC 2 cut(s) 154, 181
TspDTI ATGAA 3 cut(s) 221, 275, 360
VpaK11BI GGWCC 1 cut(s) 384
VspI ATTAAT 1 cut(s) 468
XapI RAATTY 1 cut(s) 413
XbaI TCTAGA 1 cut(s) 301
XceI RCATGY 1 cut(s) 162
XmnI GAANNNNTTC 1 cut(s) 367
XspI CTAG 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.