RchiOBHm_Chr2g0114181

Leucine rich repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000229
Physical Location & Seq
Reverse (-)
26190234 .. 26190743
510 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48747

Sequence Viewer

Length: 420 bp
ATGTTGAAGGAGATCTACCTTGATAGTAATAATTTTGAAGCACGAAGTATATCACATCTCTTATATCAGCTGGAATGTGTGTTGAATTTTTCAGAAATTCCGAATAAGATCGGCACTTTGAATCATCTGGAAAAATTTTATGTGCAAGAGAATGCCTTAAAAGGGCCTATCCCTATGACTATCTTCAACATGTCATCTTTGACTATTGTAACTTTCTATGGTAACAATTTGAATGGTAGAATTCCTGACAATATTTGTCAAAATCCTTCAAATATTCAAGAGTTGAATTTGGCTGCCAATCAGTTTAATGGTCCACTTCCTTCCATATTTGGGCAATGCAAACAACTTCTTCGATTAGGCTTGGCGGCTAACAGCTTGACAGGTATTCATAATATCAATTGCATATATTTAATCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04626 map04016 map04626
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

139

Amino Acids

15.6

Weight (kDa)

6.26

Isoelectric Point (pI)

39.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 365
AcsI RAATTY 5 cut(s) 85, 96, 134, 240, 286
AfiI CCNNNNNNNGG 2 cut(s) 162, 330
AflIII ACRYGT 1 cut(s) 189
AgsI TTSAA 9 cut(s) 7, 38, 85, 121, 187, 232, 270, 278, 286
AluBI AGCT 2 cut(s) 70, 375
AluI AGCT 2 cut(s) 70, 375
AoxI GGCC 1 cut(s) 164
ApeKI GCWGC 1 cut(s) 293
ApoI RAATTY 5 cut(s) 85, 96, 134, 240, 286
AspS9I GGNCC 2 cut(s) 164, 311
AvaII GGWCC 1 cut(s) 311
BarI GAAGNNNNNNTAC 1 cut(s) 31
BbvI GCAGC 1 cut(s) 280
BglII AGATCT 1 cut(s) 12
BisI GCNGC 2 cut(s) 294, 366
BlsI GCNGC 2 cut(s) 295, 367
Bme18I GGWCC 1 cut(s) 311
BmgT120I GGNCC 2 cut(s) 164, 311
Bsc4I CCNNNNNNNGG 2 cut(s) 162, 330
Bse3DI GCAATG 1 cut(s) 341
BseLI CCNNNNNNNGG 2 cut(s) 162, 330
BseMI GCAATG 1 cut(s) 341
BseXI GCAGC 1 cut(s) 280
BshFI GGCC 1 cut(s) 166
BslI CCNNNNNNNGG 2 cut(s) 162, 330
BsmI GAATGC 1 cut(s) 157
BsnI GGCC 1 cut(s) 166
Bsp143I GATC 2 cut(s) 12, 108
BspACI CCGC 1 cut(s) 365
BspANI GGCC 1 cut(s) 166
BsrDI GCAATG 1 cut(s) 341
BssMI GATC 2 cut(s) 12, 108
BstKTI GATC 2 cut(s) 15, 111
BstMBI GATC 2 cut(s) 12, 108
BstNSI RCATGY 1 cut(s) 193
BstV1I GCAGC 1 cut(s) 280
BstX2I RGATCY 1 cut(s) 12
BstYI RGATCY 1 cut(s) 12
BsuRI GGCC 1 cut(s) 166
Cfr13I GGNCC 2 cut(s) 164, 311
CviAII CATG 1 cut(s) 190
CviJI RGCY 6 cut(s) 70, 166, 293, 360, 368, 375
CviKI_1 RGCY 6 cut(s) 70, 166, 293, 360, 368, 375
DpnI GATC 2 cut(s) 14, 110
DpnII GATC 2 cut(s) 12, 108
Eco47I GGWCC 1 cut(s) 311
EcoO109I RGGNCCY 1 cut(s) 164
EcoRI GAATTC 1 cut(s) 240
FaeI CATG 1 cut(s) 193
FatI CATG 1 cut(s) 189
Fnu4HI GCNGC 2 cut(s) 294, 366
Fsp4HI GCNGC 2 cut(s) 294, 366
GluI GCNGC 2 cut(s) 294, 366
HaeIII GGCC 1 cut(s) 166
Hin1II CATG 1 cut(s) 193
HinfI GANTC 1 cut(s) 121
Hpy166II GTNNAC 1 cut(s) 314
Hpy188I TCNGA 2 cut(s) 94, 102
Hpy188III TCNNGA 3 cut(s) 128, 245, 278
Hpy8I GTNNAC 1 cut(s) 314
HpyAV CCTTC 2 cut(s) 276, 330
HpyCH4V TGCA 3 cut(s) 145, 339, 402
Hsp92II CATG 1 cut(s) 193
Kzo9I GATC 2 cut(s) 12, 108
LpnPI CCDG 4 cut(s) 56, 113, 258, 366
Lsp1109I GCAGC 1 cut(s) 280
MaeIII GTNAC 2 cut(s) 208, 221
MalI GATC 2 cut(s) 14, 110
MboI GATC 2 cut(s) 12, 108
MboII GAAGA 2 cut(s) 175, 341
MfeI CAATTG 1 cut(s) 397
MflI RGATCY 1 cut(s) 12
MluCI AATT 8 cut(s) 31, 85, 96, 134, 226, 240, 286, 397
MseI TTAA 4 cut(s) 158, 306, 410, 418
MspA1I CMGCKG 1 cut(s) 70
MunI CAATTG 1 cut(s) 397
Mva1269I GAATGC 1 cut(s) 157
NdeII GATC 2 cut(s) 12, 108
NlaIII CATG 1 cut(s) 193
NspI RCATGY 1 cut(s) 193
PciI ACATGT 1 cut(s) 189
PctI GAATGC 1 cut(s) 157
PfeI GAWTC 1 cut(s) 121
PkrI GCNGC 2 cut(s) 295, 367
PscI ACATGT 1 cut(s) 189
PspPI GGNCC 2 cut(s) 164, 311
PsuI RGATCY 1 cut(s) 12
PvuII CAGCTG 1 cut(s) 70
SaqAI TTAA 4 cut(s) 158, 306, 410, 418
SatI GCNGC 2 cut(s) 294, 366
Sau3AI GATC 2 cut(s) 12, 108
Sau96I GGNCC 2 cut(s) 164, 311
SetI ASST 4 cut(s) 21, 72, 377, 385
SinI GGWCC 1 cut(s) 311
Sse9I AATT 8 cut(s) 31, 85, 96, 134, 226, 240, 286, 397
SsiI CCGC 1 cut(s) 365
SspI AATATT 2 cut(s) 253, 274
TaqI TCGA 1 cut(s) 352
TasI AATT 8 cut(s) 31, 85, 96, 134, 226, 240, 286, 397
TauI GCSGC 1 cut(s) 368
TfiI GAWTC 1 cut(s) 121
Tru1I TTAA 4 cut(s) 158, 306, 410, 418
Tru9I TTAA 4 cut(s) 158, 306, 410, 418
TseI GCWGC 1 cut(s) 293
TspDTI ATGAA 1 cut(s) 377
VpaK11BI GGWCC 1 cut(s) 311
XapI RAATTY 5 cut(s) 85, 96, 134, 240, 286
XceI RCATGY 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.