Rh4DG369800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000229
Physical Location & Seq
Forward (+)
58907108 .. 58907797
690 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG369800.1

Sequence Viewer

Length: 306 bp
ATGTCACTCCCTCTTCCGGCGACGACGCCCACGCCCGAGTATCTCCGGCCGAATCCGCTGCCACCGCCAATCCGGTCGCCTCGCTCCCGGTCTTCTCCATCAAGCACCGCCGAGCCTCCTCCACTGCGGTCGTCGCCGCCGACTGTGCTGTCTGCCTCTCCAAGTTCGAGCACGACGACCAACTCCGGCTACTCCCTCTCTGCTGTCACGCCTTCCACGTATCGTGCATCGACACGTGGCTCCACTCCCAGCAGACCTGCCTGTTCTGCCGGTCGCCTATTTCCGCGTCCGACTCCGAGCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

10.46

Weight (kDa)

11.65

Isoelectric Point (pI)

104.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 148
Acc36I ACCTGC 1 cut(s) 265
AccII CGCG 1 cut(s) 286
AciI CCGC 6 cut(s) 56, 65, 108, 127, 137, 284
AcoI YGGCCR 1 cut(s) 47
AcvI CACGTG 1 cut(s) 236
AcyI GRCGYC 1 cut(s) 26
AfiI CCNNNNNNNGG 1 cut(s) 16
AflIII ACRYGT 1 cut(s) 233
AluBI AGCT 1 cut(s) 300
AluI AGCT 1 cut(s) 300
Alw21I GWGCWC 2 cut(s) 173, 302
Ama87I CYCGRG 1 cut(s) 35
AoxI GGCC 1 cut(s) 47
ApeKI GCWGC 1 cut(s) 58
AsuC2I CCSGG 1 cut(s) 88
AvaI CYCGRG 1 cut(s) 35
BanII GRGCYC 1 cut(s) 302
BbrPI CACGTG 1 cut(s) 236
BbsI GAAGAC 1 cut(s) 84
Bbv12I GWGCWC 2 cut(s) 173, 302
BbvI GCAGC 1 cut(s) 45
BccI CCATC 1 cut(s) 106
BcgI CGANNNNNNTGC 2 cut(s) 40, 74
BcnI CCSGG 1 cut(s) 88
BfuAI ACCTGC 1 cut(s) 265
BisI GCNGC 2 cut(s) 59, 137
BlsI GCNGC 2 cut(s) 60, 138
Bme1390I CCNGG 1 cut(s) 88
BmeT110I CYCGRG 1 cut(s) 35
BmiI GGNNCC 1 cut(s) 241
BmrFI CCNGG 1 cut(s) 88
BmsI GCATC 1 cut(s) 236
BpiI GAAGAC 1 cut(s) 84
BpuMI CCSGG 1 cut(s) 88
BsaAI YACGTR 2 cut(s) 219, 236
BsaHI GRCGYC 1 cut(s) 26
BsaWI WCCGGW 1 cut(s) 72
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse118I RCCGGY 1 cut(s) 269
BseLI CCNNNNNNNGG 1 cut(s) 16
BseRI GAGGAG 1 cut(s) 108
BseX3I CGGCCG 1 cut(s) 47
BseXI GCAGC 1 cut(s) 45
BseYI CCCAGC 1 cut(s) 248
Bsh1236I CGCG 1 cut(s) 286
Bsh1285I CGRYCG 4 cut(s) 50, 77, 131, 274
BshFI GGCC 1 cut(s) 49
BsiEI CGRYCG 4 cut(s) 50, 77, 131, 274
BsiHKAI GWGCWC 2 cut(s) 173, 302
BsiHKCI CYCGRG 1 cut(s) 35
BsiSI CCGG 6 cut(s) 17, 46, 73, 88, 186, 270
BslI CCNNNNNNNGG 1 cut(s) 16
BsnI GGCC 1 cut(s) 49
BsoBI CYCGRG 1 cut(s) 35
Bsp1286I GDGCHC 2 cut(s) 173, 302
BspACI CCGC 6 cut(s) 56, 65, 108, 127, 137, 284
BspANI GGCC 1 cut(s) 49
BspFNI CGCG 1 cut(s) 286
BspHI TCATGA 1 cut(s) 302
BspLI GGNNCC 1 cut(s) 241
BspMI ACCTGC 1 cut(s) 265
BsrFI RCCGGY 1 cut(s) 269
BssAI RCCGGY 1 cut(s) 269
BssNI GRCGYC 1 cut(s) 26
Bst4CI ACNGT 1 cut(s) 145
Bst6I CTCTTC 1 cut(s) 18
BstACI GRCGYC 1 cut(s) 26
BstBAI YACGTR 2 cut(s) 219, 236
BstFNI CGCG 1 cut(s) 286
BstMCI CGRYCG 4 cut(s) 50, 77, 131, 274
BstMWI GCNNNNNNNGC 5 cut(s) 55, 64, 133, 145, 266
BstSCI CCNGG 1 cut(s) 86
BstUI CGCG 1 cut(s) 286
BstV1I GCAGC 1 cut(s) 45
BstV2I GAAGAC 1 cut(s) 84
BstZI CGGCCG 1 cut(s) 47
BsuRI GGCC 1 cut(s) 49
BtsI GCAGTG 1 cut(s) 122
BtsIMutI CAGTG 1 cut(s) 122
BveI ACCTGC 1 cut(s) 265
CciI TCATGA 1 cut(s) 302
Cfr10I RCCGGY 1 cut(s) 269
CseI GACGC 2 cut(s) 34, 275
CviAII CATG 1 cut(s) 303
CviJI RGCY 5 cut(s) 49, 115, 189, 240, 300
CviKI_1 RGCY 5 cut(s) 49, 115, 189, 240, 300
DrdI GACNNNNNNGTC 1 cut(s) 148
DseDI GACNNNNNNGTC 1 cut(s) 148
EaeI YGGCCR 1 cut(s) 47
EagI CGGCCG 1 cut(s) 47
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
Ecl136II GAGCTC 1 cut(s) 300
EclXI CGGCCG 1 cut(s) 47
Eco24I GRGCYC 1 cut(s) 302
Eco52I CGGCCG 1 cut(s) 47
Eco53kI GAGCTC 1 cut(s) 300
Eco72I CACGTG 1 cut(s) 236
Eco88I CYCGRG 1 cut(s) 35
EcoICRI GAGCTC 1 cut(s) 300
EcoT38I GRGCYC 1 cut(s) 302
FaeI CATG 1 cut(s) 306
FaiI YATR 1 cut(s) 304
FatI CATG 1 cut(s) 302
Fnu4HI GCNGC 2 cut(s) 59, 137
FriOI GRGCYC 1 cut(s) 302
Fsp4HI GCNGC 2 cut(s) 59, 137
GluI GCNGC 2 cut(s) 59, 137
GsaI CCCAGC 1 cut(s) 252
HaeIII GGCC 1 cut(s) 49
HapII CCGG 6 cut(s) 17, 46, 73, 88, 186, 270
HgaI GACGC 2 cut(s) 34, 275
Hin1I GRCGYC 1 cut(s) 26
Hin1II CATG 1 cut(s) 306
HinfI GANTC 2 cut(s) 52, 292
HpaII CCGG 6 cut(s) 17, 46, 73, 88, 186, 270
Hpy188I TCNGA 2 cut(s) 291, 297
Hpy188III TCNNGA 1 cut(s) 303
Hpy99I CGWCG 4 cut(s) 25, 28, 136, 178
HpyAV CCTTC 1 cut(s) 222
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4IV ACGT 2 cut(s) 218, 235
HpyCH4V TGCA 1 cut(s) 227
HpyF10VI GCNNNNNNNGC 5 cut(s) 55, 64, 133, 145, 266
HpySE526I ACGT 2 cut(s) 218, 235
Hsp92I GRCGYC 1 cut(s) 26
Hsp92II CATG 1 cut(s) 306
LmnI GCTCC 2 cut(s) 89, 245
LpnPI CCDG 9 cut(s) 30, 59, 86, 101, 199, 262, 270, 274, 283
Lsp1109I GCAGC 1 cut(s) 45
LweI GCATC 1 cut(s) 236
MaeII ACGT 2 cut(s) 218, 235
MaeIII GTNAC 2 cut(s) 3, 205
MboII GAAGA 2 cut(s) 5, 84
MhlI GDGCHC 2 cut(s) 173, 302
MlyI GAGTC 1 cut(s) 286
MnlI CCTC 6 cut(s) 21, 90, 126, 129, 166, 206
MspA1I CMGCKG 1 cut(s) 58
MspI CCGG 6 cut(s) 17, 46, 73, 88, 186, 270
MspR9I CCNGG 1 cut(s) 88
MvnI CGCG 1 cut(s) 286
MwoI GCNNNNNNNGC 5 cut(s) 55, 64, 133, 145, 266
NciI CCSGG 1 cut(s) 88
NlaIII CATG 1 cut(s) 306
NlaIV GGNNCC 1 cut(s) 241
NmeAIII GCCGAG 1 cut(s) 136
NmuCI GTSAC 2 cut(s) 3, 205
PagI TCATGA 1 cut(s) 302
PcsI WCGNNNNNNNCGW 3 cut(s) 137, 173, 215
PfeI GAWTC 1 cut(s) 52
PkrI GCNGC 2 cut(s) 60, 138
PleI GAGTC 1 cut(s) 286
PmaCI CACGTG 1 cut(s) 236
PmlI CACGTG 1 cut(s) 236
PpsI GAGTC 1 cut(s) 286
Ppu21I YACGTR 2 cut(s) 219, 236
Psp124BI GAGCTC 1 cut(s) 302
PspCI CACGTG 1 cut(s) 236
PspFI CCCAGC 1 cut(s) 248
PspN4I GGNNCC 1 cut(s) 241
SacI GAGCTC 1 cut(s) 302
SatI GCNGC 2 cut(s) 59, 137
SchI GAGTC 1 cut(s) 286
ScrFI CCNGG 1 cut(s) 88
SduI GDGCHC 2 cut(s) 173, 302
SetI ASST 4 cut(s) 221, 238, 259, 302
SfaNI GCATC 1 cut(s) 236
SsiI CCGC 6 cut(s) 56, 65, 108, 127, 137, 284
SstI GAGCTC 1 cut(s) 302
StyD4I CCNGG 1 cut(s) 86
TaaI ACNGT 1 cut(s) 145
TaiI ACGT 2 cut(s) 221, 238
TaqI TCGA 2 cut(s) 167, 230
TauI GCSGC 1 cut(s) 139
TfiI GAWTC 1 cut(s) 52
TscAI CASTG 1 cut(s) 129
TseFI GTSAC 2 cut(s) 3, 205
TseI GCWGC 1 cut(s) 58
Tsp45I GTSAC 2 cut(s) 3, 205
TspRI CASTG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.