Rh6DG142900

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000229
Physical Location & Seq
Reverse (-)
20633009 .. 20636107
3099 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG142900.1

Sequence Viewer

Length: 897 bp
ATGGCAGCACAAACCAACATCAGCACAGACCAGTCTGCTCTTCTTGCTCTCAAATCTCATATCACCGATGACCCTCAAAACAAGATCTTGACCAACTGGTCAACCACCACTCAAGTCTGCAACTGGGCTGGCGTCACATGTGGTGCACGCCACATTAGAGTCACAGCCTTGAACCTCTCTTACATGGGACTCTCAGGCACCATTCATCCAGAGCTAGGCAACCTATCCTTTCTTGTTCAGCTAAGCTTCACAAATAACAGTTTTCACGGCACCTTGCCTTCTGAATTGGGTCGTTTGCGCCGATTGAAATTCATTGATTTGGAAGGCAACCACTTTGCGGGAATCATTCCATCATGGCTTGGGTTATTATCCAAACTTCAAACAATCAATTTGCGTGGTAATGAATTTTCAGGTTCCATACCTGCTGCCATGTTCAACTTATCTATACTCCAAGTAATTGATTTGAGCAATAACCAGCTATCAGGTAGCATACCAAGAGAACTTGAAAACTTAATAATGTTGAAGGAGATATACCTTGATAGCAACAACTTCGAAGAACTTCCAAACGAGATTGACAGTTTGGATCAGCTGGAGACGTTGTTGGTGCAATTCAACTCACTTCAAGGGCATTATCCTGTTGTCCTCTTCAACATGTCTTCTTTGACTACTTTGAGTCTATGGCAAAACAACTTGAGTGGTAGTCTTCCTGATAACATATGTCAACATCTTCCAAGCATTCAAATATTGGACTTGGGTCGCAACCAGTTTGGGGGTTCACTTCCATCCAAATGGTCACAATGCAAACAACTTCGCCTGTTAGATTTCACGAGTAACAATTTGAGAGACTCCAGTGAGCATGGACAAAGATGCAGGCCTGATCCATTTCATTGTCAGTAA

Protein Analysis

298

Amino Acids

33.22

Weight (kDa)

5.82

Isoelectric Point (pI)

41.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 8 - 47 9.6e-12 Leucine rich repeat N-terminal domain
LRR_14 PF23598 57 - 152 7.3e-06 Leucine-rich repeat region
LRR_8 PF13855 125 - 184 3.6e-09 Leucine rich repeat
LRR_14 PF23598 146 - 228 4.4e-07 Leucine-rich repeat region
LRR_8 PF13855 196 - 256 3.7e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 97
Acc36I ACCTGC 1 cut(s) 430
AccB1I GGYRCC 2 cut(s) 197, 269
AciI CCGC 1 cut(s) 338
AclWI GGATC 2 cut(s) 591, 872
AcsI RAATTY 2 cut(s) 308, 404
AcyI GRCGYC 1 cut(s) 132
AfiI CCNNNNNNNGG 3 cut(s) 215, 337, 769
AflIII ACRYGT 2 cut(s) 137, 651
AluBI AGCT 5 cut(s) 214, 241, 246, 478, 589
AluI AGCT 5 cut(s) 214, 241, 246, 478, 589
Alw21I GWGCWC 1 cut(s) 148
Alw26I GTCTC 2 cut(s) 587, 837
Alw44I GTGCAC 1 cut(s) 144
AlwI GGATC 2 cut(s) 591, 872
AoxI GGCC 1 cut(s) 872
ApaLI GTGCAC 1 cut(s) 144
ApeKI GCWGC 2 cut(s) 5, 425
ApoI RAATTY 2 cut(s) 308, 404
Asp700I GAANNNNTTC 1 cut(s) 558
AspLEI GCGC 1 cut(s) 300
AsuHPI GGTGA 1 cut(s) 55
AsuII TTCGAA 1 cut(s) 552
BaeGI GKGCMC 1 cut(s) 148
BanI GGYRCC 2 cut(s) 197, 269
BarI GAAGNNNNNNTAC 2 cut(s) 515, 547
BauI CACGAG 1 cut(s) 826
BbsI GAAGAC 2 cut(s) 648, 695
Bbv12I GWGCWC 1 cut(s) 148
BbvI GCAGC 2 cut(s) 17, 412
BccI CCATC 2 cut(s) 358, 790
BceAI ACGGC 1 cut(s) 283
BcgI CGANNNNNNTGC 2 cut(s) 532, 566
BcoDI GTCTC 2 cut(s) 587, 837
BfaI CTAG 1 cut(s) 215
BfuAI ACCTGC 1 cut(s) 430
BglII AGATCT 1 cut(s) 84
BisI GCNGC 2 cut(s) 6, 426
BlpI GCTNAGC 1 cut(s) 242
BlsI GCNGC 2 cut(s) 7, 427
BmiI GGNNCC 3 cut(s) 199, 271, 415
BmrI ACTGGG 1 cut(s) 133
BmsI GCATC 1 cut(s) 857
BmuI ACTGGG 1 cut(s) 133
BoxI GACNNNNGTC 1 cut(s) 753
BpiI GAAGAC 2 cut(s) 648, 695
BpmI CTGGAG 2 cut(s) 611, 832
Bpu1102I GCTNAGC 1 cut(s) 242
Bpu14I TTCGAA 1 cut(s) 552
BpuEI CTTGAG 2 cut(s) 96, 712
BsaHI GRCGYC 1 cut(s) 132
BsaXI ACNNNNNCTCC 2 cut(s) 584, 614
Bsc4I CCNNNNNNNGG 3 cut(s) 215, 337, 769
Bse1I ACTGG 5 cut(s) 31, 101, 128, 763, 849
BseGI GGATG 2 cut(s) 205, 782
BseLI CCNNNNNNNGG 3 cut(s) 215, 337, 769
BseMII CTCAG 1 cut(s) 207
BseNI ACTGG 5 cut(s) 31, 101, 128, 763, 849
BseSI GKGCMC 1 cut(s) 148
BseXI GCAGC 2 cut(s) 17, 412
BshFI GGCC 1 cut(s) 874
BshNI GGYRCC 2 cut(s) 197, 269
BsiHKAI GWGCWC 1 cut(s) 148
BslFI GGGAC 1 cut(s) 201
BslI CCNNNNNNNGG 3 cut(s) 215, 337, 769
BsmAI GTCTC 2 cut(s) 587, 837
BsmBI CGTCTC 1 cut(s) 587
BsmFI GGGAC 1 cut(s) 201
BsmI GAATGC 1 cut(s) 735
BsnI GGCC 1 cut(s) 874
Bsp119I TTCGAA 1 cut(s) 552
Bsp1286I GDGCHC 1 cut(s) 148
Bsp143I GATC 3 cut(s) 84, 583, 877
Bsp1720I GCTNAGC 1 cut(s) 242
BspACI CCGC 1 cut(s) 338
BspANI GGCC 1 cut(s) 874
BspCNI CTCAG 1 cut(s) 206
BspLI GGNNCC 3 cut(s) 199, 271, 415
BspMI ACCTGC 1 cut(s) 430
BspPI GGATC 2 cut(s) 591, 872
BspQI GCTCTTC 1 cut(s) 45
BspT104I TTCGAA 1 cut(s) 552
BspT107I GGYRCC 2 cut(s) 197, 269
BsrI ACTGG 5 cut(s) 31, 101, 128, 763, 849
BssMI GATC 3 cut(s) 84, 583, 877
BssNI GRCGYC 1 cut(s) 132
BssSI CACGAG 1 cut(s) 826
Bst2BI CACGAG 1 cut(s) 826
Bst4CI ACNGT 2 cut(s) 260, 578
Bst6I CTCTTC 2 cut(s) 45, 650
BstACI GRCGYC 1 cut(s) 132
BstBI TTCGAA 1 cut(s) 552
BstC8I GCNNGC 3 cut(s) 130, 148, 872
BstDEI CTNAG 2 cut(s) 193, 242
BstF5I GGATG 2 cut(s) 205, 782
BstHHI GCGC 1 cut(s) 300
BstKTI GATC 3 cut(s) 87, 586, 880
BstMAI GTCTC 2 cut(s) 587, 837
BstMBI GATC 3 cut(s) 84, 583, 877
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstNSI RCATGY 2 cut(s) 141, 655
BstPAI GACNNNNGTC 1 cut(s) 753
BstSLI GKGCMC 1 cut(s) 148
BstV1I GCAGC 2 cut(s) 17, 412
BstV2I GAAGAC 2 cut(s) 648, 695
BstX2I RGATCY 1 cut(s) 84
BstXI CCANNNNNNTGG 1 cut(s) 789
BstYI RGATCY 1 cut(s) 84
BsuRI GGCC 1 cut(s) 874
BtsCI GGATG 2 cut(s) 205, 782
BtsIMutI CAGTG 1 cut(s) 856
BveI ACCTGC 1 cut(s) 430
Cac8I GCNNGC 3 cut(s) 130, 148, 872
CfoI GCGC 1 cut(s) 300
CseI GACGC 1 cut(s) 121
CspCI CAANNNNNGTGG 4 cut(s) 376, 411, 676, 711
CviAII CATG 6 cut(s) 138, 184, 354, 430, 652, 857
CviJI RGCY 9 cut(s) 128, 167, 214, 241, 246, 358, 478, 589, 874
CviKI_1 RGCY 9 cut(s) 128, 167, 214, 241, 246, 358, 478, 589, 874
DdeI CTNAG 2 cut(s) 193, 242
DpnI GATC 3 cut(s) 86, 585, 879
DpnII GATC 3 cut(s) 84, 583, 877
DrdI GACNNNNNNGTC 1 cut(s) 97
DseDI GACNNNNNNGTC 1 cut(s) 97
Eam1104I CTCTTC 2 cut(s) 45, 650
EarI CTCTTC 2 cut(s) 45, 650
Eco147I AGGCCT 1 cut(s) 874
Esp3I CGTCTC 1 cut(s) 587
FaeI CATG 6 cut(s) 141, 187, 357, 433, 655, 860
FaqI GGGAC 1 cut(s) 201
FatI CATG 6 cut(s) 137, 183, 353, 429, 651, 856
FauI CCCGC 1 cut(s) 331
FauNDI CATATG 1 cut(s) 716
Fnu4HI GCNGC 2 cut(s) 6, 426
FokI GGATG 2 cut(s) 192, 769
Fsp4HI GCNGC 2 cut(s) 6, 426
FspBI CTAG 1 cut(s) 215
GlaI GCGC 1 cut(s) 299
GluI GCNGC 2 cut(s) 6, 426
GsuI CTGGAG 2 cut(s) 611, 832
HaeIII GGCC 1 cut(s) 874
HgaI GACGC 1 cut(s) 121
HhaI GCGC 1 cut(s) 300
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 6 cut(s) 141, 187, 357, 433, 655, 860
Hin6I GCGC 1 cut(s) 298
HinP1I GCGC 1 cut(s) 298
HincII GTYRAC 2 cut(s) 102, 722
HindII GTYRAC 2 cut(s) 102, 722
HindIII AAGCTT 1 cut(s) 244
HinfI GANTC 5 cut(s) 159, 189, 342, 673, 845
HphI GGTGA 1 cut(s) 55
Hpy166II GTNNAC 4 cut(s) 102, 146, 722, 776
Hpy188I TCNGA 1 cut(s) 283
Hpy188III TCNNGA 4 cut(s) 88, 209, 707, 826
Hpy8I GTNNAC 4 cut(s) 102, 146, 722, 776
HpyAV CCTTC 3 cut(s) 288, 317, 517
HpyCH4III ACNGT 2 cut(s) 260, 578
HpyCH4IV ACGT 1 cut(s) 596
HpyCH4V TGCA 5 cut(s) 120, 146, 607, 801, 870
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
HpyF3I CTNAG 2 cut(s) 193, 242
HpySE526I ACGT 1 cut(s) 596
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 6 cut(s) 141, 187, 357, 433, 655, 860
HspAI GCGC 1 cut(s) 298
Kzo9I GATC 3 cut(s) 84, 583, 877
LguI GCTCTTC 1 cut(s) 45
Lsp1109I GCAGC 2 cut(s) 17, 412
LweI GCATC 1 cut(s) 857
MaeI CTAG 1 cut(s) 215
MaeII ACGT 1 cut(s) 596
MaeIII GTNAC 4 cut(s) 133, 160, 792, 830
MalI GATC 3 cut(s) 86, 585, 879
MboI GATC 3 cut(s) 84, 583, 877
MboII GAAGA 6 cut(s) 32, 566, 637, 648, 695, 719
MflI RGATCY 1 cut(s) 84
MhlI GDGCHC 1 cut(s) 148
MluCI AATT 7 cut(s) 284, 308, 388, 404, 456, 608, 835
MlyI GAGTC 4 cut(s) 168, 183, 682, 839
MnlI CCTC 3 cut(s) 84, 185, 653
MroXI GAANNNNTTC 1 cut(s) 558
MseI TTAA 1 cut(s) 512
MslI CAYNNNNRTG 1 cut(s) 787
MspA1I CMGCKG 1 cut(s) 589
Mva1269I GAATGC 1 cut(s) 735
MwoI GCNNNNNNNGC 1 cut(s) 44
NdeI CATATG 1 cut(s) 716
NdeII GATC 3 cut(s) 84, 583, 877
NlaIII CATG 6 cut(s) 141, 187, 357, 433, 655, 860
NlaIV GGNNCC 3 cut(s) 199, 271, 415
NmuCI GTSAC 3 cut(s) 133, 160, 792
NspI RCATGY 2 cut(s) 141, 655
NspV TTCGAA 1 cut(s) 552
PceI AGGCCT 1 cut(s) 874
PciI ACATGT 2 cut(s) 137, 651
PciSI GCTCTTC 1 cut(s) 45
PcsI WCGNNNNNNNCGW 1 cut(s) 298
PctI GAATGC 1 cut(s) 735
PdmI GAANNNNTTC 1 cut(s) 558
PfeI GAWTC 1 cut(s) 342
PkrI GCNGC 2 cut(s) 7, 427
PleI GAGTC 4 cut(s) 167, 183, 681, 839
PpsI GAGTC 4 cut(s) 167, 183, 681, 839
PscI ACATGT 2 cut(s) 137, 651
PshAI GACNNNNGTC 1 cut(s) 753
PspN4I GGNNCC 3 cut(s) 199, 271, 415
PsrI GAACNNNNNNTAC 2 cut(s) 164, 196
PsuI RGATCY 1 cut(s) 84
PvuII CAGCTG 1 cut(s) 589
RseI CAYNNNNRTG 1 cut(s) 787
SapI GCTCTTC 1 cut(s) 45
SaqAI TTAA 1 cut(s) 512
SatI GCNGC 2 cut(s) 6, 426
Sau3AI GATC 3 cut(s) 84, 583, 877
SchI GAGTC 4 cut(s) 168, 183, 682, 839
SduI GDGCHC 1 cut(s) 148
SfaNI GCATC 1 cut(s) 857
SfuI TTCGAA 1 cut(s) 552
SmiMI CAYNNNNRTG 1 cut(s) 787
SmlI CTYRAG 2 cut(s) 111, 691
SmoI CTYRAG 2 cut(s) 111, 691
Sse9I AATT 7 cut(s) 284, 308, 388, 404, 456, 608, 835
SseBI AGGCCT 1 cut(s) 874
SsiI CCGC 1 cut(s) 338
SspI AATATT 1 cut(s) 744
SspMI CTAG 1 cut(s) 215
StuI AGGCCT 1 cut(s) 874
TaaI ACNGT 2 cut(s) 260, 578
TaiI ACGT 1 cut(s) 599
TaqI TCGA 1 cut(s) 552
TasI AATT 7 cut(s) 284, 308, 388, 404, 456, 608, 835
TfiI GAWTC 1 cut(s) 342
Tru1I TTAA 1 cut(s) 512
Tru9I TTAA 1 cut(s) 512
TscAI CASTG 1 cut(s) 856
TseFI GTSAC 3 cut(s) 133, 160, 792
TseI GCWGC 2 cut(s) 5, 425
Tsp45I GTSAC 3 cut(s) 133, 160, 792
TspDTI ATGAA 4 cut(s) 194, 301, 417, 875
TspRI CASTG 1 cut(s) 856
VneI GTGCAC 1 cut(s) 144
XapI RAATTY 2 cut(s) 308, 404
XceI RCATGY 2 cut(s) 141, 655
XmnI GAANNNNTTC 1 cut(s) 558
XspI CTAG 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.