Rroxscaffold_1G00040280

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000229
Physical Location & Seq
Reverse (-)
57913811 .. 57915650
1840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00040280.1

Sequence Viewer

Length: 924 bp
ATGCAAGCAATGTTGAGAAATCGGATCCTATTATTGATCGCGTTGTTGCAGCTGGTACAATACTGGTCAATGGCCAGGGCAGCACAAACAAACATCAGCACAGACTATTCTGCTCTTCTTGCTCTCAAATCTCATATCACCAATCACCCTCAAAACATGATCTTGACCAACTGGTCAACCCCCAGCTCCATTTGCAACTGGGTTGGCGTTACTTGTGGTGCACGACATCATCGAGTTACTGGCTTCAATCTCTCTTACATGGGTGTCACAGGCACCATTCCTCCAGAGCTAGGCAACCTATCATTTCTTGCTGAGCTGCGCTTCAGAAATAACAGTTTCCATGGTATCATTCCCCAAGATTTGTCTCGTCTGCGTCATCTGAAGATTCTTAATTTCGGATTCAACAACTTCAAAGGAACTATTCCTTCATGGTTAGGTGCCTTATCCGAACTTCAAACCTTCAGTTTGTACGGTAATCAGTTTTCAGGTTTAATCCCCACCAACATCTTCAACTTCTCTGCAGTGCAACTAATTGATCTTACATACAACCAACTATCAGGTAGCGTACCAAGAGAAATCGGGAACTTAACAATGCTGAAGATGATCAGCCTTGACTCTAATAATCTCAGAGAAATTCCAAAGGAAATTGGCAGTTTAGATCAGCTGGAAGAGATGAGTACACAATCCAATGTCCTAGAAGGGCATCTTCCTAGGACTATCTTCAACATGTCTTCTTTGATTACATTGGCTCTAACAGGAAACAGCTTGAATGGTAGACTTCCAGCAATATATGTCAGCATCTTCCGAGTATTCAAATGTTGTATTTGTCGAGAAACCAGTTTGTCGGTCCTCTTCCATCCAAATAATGGCAATGCAAAGAGCTTGTTTGTAATAGATTCAGTGGAAGCATACCCAAAAATATAG

Protein Analysis

307

Amino Acids

34.28

Weight (kDa)

9.18

Isoelectric Point (pI)

28.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 33 - 72 5.3e-11 Leucine rich repeat N-terminal domain
LRR_8 PF13855 150 - 209 7.6e-07 Leucine rich repeat
LRR_14 PF23598 169 - 253 3.4e-09 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 172
AccB1I GGYRCC 2 cut(s) 272, 437
AccB7I CCANNNNNTGG 1 cut(s) 866
AccI GTMKAC 1 cut(s) 775
AccII CGCG 1 cut(s) 41
AclWI GGATC 2 cut(s) 19, 32
AcoI YGGCCR 1 cut(s) 72
AcsI RAATTY 1 cut(s) 633
AcuI CTGAAG 4 cut(s) 307, 401, 445, 617
AfaI GTAC 4 cut(s) 57, 470, 567, 679
AfiI CCNNNNNNNGG 2 cut(s) 290, 866
AflIII ACRYGT 1 cut(s) 726
AgsI TTSAA 8 cut(s) 247, 403, 412, 455, 511, 724, 769, 814
AjnI CCWGG 1 cut(s) 74
AluBI AGCT 7 cut(s) 52, 186, 289, 316, 664, 765, 882
AluI AGCT 7 cut(s) 52, 186, 289, 316, 664, 765, 882
Alw21I GWGCWC 1 cut(s) 223
Alw26I GTCTC 1 cut(s) 369
Alw44I GTGCAC 1 cut(s) 219
AlwI GGATC 2 cut(s) 19, 32
AoxI GGCC 1 cut(s) 72
ApaLI GTGCAC 1 cut(s) 219
ApeKI GCWGC 3 cut(s) 49, 80, 316
ApoI RAATTY 1 cut(s) 633
AspA2I CCTAGG 1 cut(s) 710
AspLEI GCGC 1 cut(s) 321
AspS9I GGNCC 1 cut(s) 847
AsuHPI GGTGA 2 cut(s) 130, 137
AvaII GGWCC 1 cut(s) 847
AvrII CCTAGG 1 cut(s) 710
BaeGI GKGCMC 1 cut(s) 223
BalI TGGCCA 1 cut(s) 74
BamHI GGATCC 1 cut(s) 24
BanI GGYRCC 2 cut(s) 272, 437
BbsI GAAGAC 1 cut(s) 723
Bbv12I GWGCWC 1 cut(s) 223
BbvI GCAGC 3 cut(s) 61, 92, 303
BccI CCATC 1 cut(s) 864
BciT130I CCWGG 1 cut(s) 76
BclI TGATCA 1 cut(s) 603
BcoDI GTCTC 1 cut(s) 369
BfaI CTAG 3 cut(s) 290, 695, 711
BfmI CTRYAG 1 cut(s) 519
BisI GCNGC 3 cut(s) 50, 81, 317
BlnI CCTAGG 1 cut(s) 710
BlpI GCTNAGC 1 cut(s) 312
BlsI GCNGC 3 cut(s) 51, 82, 318
Bme1390I CCNGG 1 cut(s) 76
Bme18I GGWCC 1 cut(s) 847
BmgT120I GGNCC 1 cut(s) 847
BmiI GGNNCC 3 cut(s) 26, 274, 439
BmrFI CCNGG 1 cut(s) 76
BmrI ACTGGG 1 cut(s) 208
BmsI GCATC 2 cut(s) 712, 807
BmuI ACTGGG 1 cut(s) 208
BpiI GAAGAC 1 cut(s) 723
BpmI CTGGAG 1 cut(s) 267
Bpu1102I GCTNAGC 1 cut(s) 312
BsaJI CCNNGG 3 cut(s) 75, 340, 710
BsaXI ACNNNNNCTCC 2 cut(s) 265, 295
Bsc4I CCNNNNNNNGG 2 cut(s) 290, 866
Bse1I ACTGG 5 cut(s) 68, 176, 203, 244, 837
Bse3DI GCAATG 2 cut(s) 15, 877
BseBI CCWGG 1 cut(s) 76
BseDI CCNNGG 3 cut(s) 75, 340, 710
BseGI GGATG 1 cut(s) 856
BseLI CCNNNNNNNGG 2 cut(s) 290, 866
BseMI GCAATG 2 cut(s) 15, 877
BseMII CTCAG 2 cut(s) 303, 640
BseNI ACTGG 5 cut(s) 68, 176, 203, 244, 837
BseSI GKGCMC 1 cut(s) 223
BseXI GCAGC 3 cut(s) 61, 92, 303
BseYI CCCAGC 1 cut(s) 182
Bsh1236I CGCG 1 cut(s) 41
BshFI GGCC 1 cut(s) 74
BshNI GGYRCC 2 cut(s) 272, 437
BsiHKAI GWGCWC 1 cut(s) 223
BslI CCNNNNNNNGG 2 cut(s) 290, 866
BsmAI GTCTC 1 cut(s) 369
BsnI GGCC 1 cut(s) 74
Bsp1286I GDGCHC 1 cut(s) 223
Bsp143I GATC 6 cut(s) 24, 36, 159, 535, 603, 658
Bsp1720I GCTNAGC 1 cut(s) 312
Bsp19I CCATGG 1 cut(s) 340
BspANI GGCC 1 cut(s) 74
BspCNI CTCAG 2 cut(s) 304, 639
BspFNI CGCG 1 cut(s) 41
BspLI GGNNCC 3 cut(s) 26, 274, 439
BspMAI CTGCAG 1 cut(s) 523
BspPI GGATC 2 cut(s) 19, 32
BspQI GCTCTTC 1 cut(s) 120
BspT107I GGYRCC 2 cut(s) 272, 437
BsrDI GCAATG 2 cut(s) 15, 877
BsrI ACTGG 5 cut(s) 68, 176, 203, 244, 837
BssECI CCNNGG 3 cut(s) 75, 340, 710
BssMI GATC 6 cut(s) 24, 36, 159, 535, 603, 658
BssT1I CCWWGG 2 cut(s) 340, 710
Bst2UI CCWGG 1 cut(s) 76
Bst4CI ACNGT 2 cut(s) 335, 473
Bst6I CTCTTC 3 cut(s) 120, 663, 857
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 2 cut(s) 312, 626
BstDSI CCRYGG 1 cut(s) 340
BstF5I GGATG 1 cut(s) 856
BstFNI CGCG 1 cut(s) 41
BstHHI GCGC 1 cut(s) 321
BstKTI GATC 6 cut(s) 27, 39, 162, 538, 606, 661
BstMAI GTCTC 1 cut(s) 369
BstMBI GATC 6 cut(s) 24, 36, 159, 535, 603, 658
BstMWI GCNNNNNNNGC 3 cut(s) 80, 119, 192
BstNI CCWGG 1 cut(s) 76
BstNSI RCATGY 1 cut(s) 730
BstSCI CCNGG 1 cut(s) 74
BstSFI CTRYAG 1 cut(s) 519
BstSLI GKGCMC 1 cut(s) 223
BstUI CGCG 1 cut(s) 41
BstV1I GCAGC 3 cut(s) 61, 92, 303
BstV2I GAAGAC 1 cut(s) 723
BstX2I RGATCY 1 cut(s) 24
BstYI RGATCY 1 cut(s) 24
BsuRI GGCC 1 cut(s) 74
BtgI CCRYGG 1 cut(s) 340
BtsCI GGATG 1 cut(s) 856
BtsI GCAGTG 1 cut(s) 528
BtsIMutI CAGTG 2 cut(s) 528, 906
Cac8I GCNNGC 1 cut(s) 6
CfoI GCGC 1 cut(s) 321
Cfr13I GGNCC 1 cut(s) 847
CseI GACGC 1 cut(s) 362
Csp6I GTAC 4 cut(s) 56, 469, 566, 678
CviAII CATG 5 cut(s) 157, 259, 341, 429, 727
CviQI GTAC 4 cut(s) 56, 469, 566, 678
DdeI CTNAG 2 cut(s) 312, 626
DpnI GATC 6 cut(s) 26, 38, 161, 537, 605, 660
DpnII GATC 6 cut(s) 24, 36, 159, 535, 603, 658
DrdI GACNNNNNNGTC 1 cut(s) 172
DseDI GACNNNNNNGTC 1 cut(s) 172
EaeI YGGCCR 1 cut(s) 72
Eam1104I CTCTTC 3 cut(s) 120, 663, 857
EarI CTCTTC 3 cut(s) 120, 663, 857
Eco130I CCWWGG 2 cut(s) 340, 710
Eco47I GGWCC 1 cut(s) 847
Eco57I CTGAAG 4 cut(s) 307, 401, 445, 617
EcoRII CCWGG 1 cut(s) 74
EcoT14I CCWWGG 2 cut(s) 340, 710
ErhI CCWWGG 2 cut(s) 340, 710
FaeI CATG 5 cut(s) 160, 262, 344, 432, 730
FalI AAGNNNNNCTT 2 cut(s) 690, 722
FatI CATG 5 cut(s) 156, 258, 340, 428, 726
FbaI TGATCA 1 cut(s) 603
FblI GTMKAC 1 cut(s) 775
Fnu4HI GCNGC 3 cut(s) 50, 81, 317
FokI GGATG 1 cut(s) 843
Fsp4HI GCNGC 3 cut(s) 50, 81, 317
FspBI CTAG 3 cut(s) 290, 695, 711
GlaI GCGC 1 cut(s) 320
GluI GCNGC 3 cut(s) 50, 81, 317
GsaI CCCAGC 1 cut(s) 186
GsuI CTGGAG 1 cut(s) 267
HaeIII GGCC 1 cut(s) 74
HgaI GACGC 1 cut(s) 362
HhaI GCGC 1 cut(s) 321
Hin1II CATG 5 cut(s) 160, 262, 344, 432, 730
Hin6I GCGC 1 cut(s) 319
HinP1I GCGC 1 cut(s) 319
HincII GTYRAC 1 cut(s) 177
HindII GTYRAC 1 cut(s) 177
HinfI GANTC 4 cut(s) 385, 399, 614, 896
HphI GGTGA 2 cut(s) 130, 137
Hpy166II GTNNAC 4 cut(s) 177, 221, 680, 776
Hpy188I TCNGA 7 cut(s) 24, 326, 381, 398, 448, 629, 806
Hpy188III TCNNGA 4 cut(s) 163, 284, 580, 830
Hpy8I GTNNAC 4 cut(s) 177, 221, 680, 776
HpyAV CCTTC 3 cut(s) 435, 469, 692
HpyCH4III ACNGT 2 cut(s) 335, 473
HpyCH4V TGCA 7 cut(s) 4, 49, 195, 221, 521, 526, 875
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 119, 192
HpyF3I CTNAG 2 cut(s) 312, 626
Hsp92II CATG 5 cut(s) 160, 262, 344, 432, 730
HspAI GCGC 1 cut(s) 319
Ksp22I TGATCA 1 cut(s) 603
Kzo9I GATC 6 cut(s) 24, 36, 159, 535, 603, 658
LguI GCTCTTC 1 cut(s) 120
LmnI GCTCC 1 cut(s) 191
Lsp1109I GCAGC 3 cut(s) 61, 92, 303
LweI GCATC 2 cut(s) 712, 807
MaeI CTAG 3 cut(s) 290, 695, 711
MaeIII GTNAC 3 cut(s) 208, 235, 265
MalI GATC 6 cut(s) 26, 38, 161, 537, 605, 660
MboI GATC 6 cut(s) 24, 36, 159, 535, 603, 658
MflI RGATCY 1 cut(s) 24
MhlI GDGCHC 1 cut(s) 223
MlsI TGGCCA 1 cut(s) 74
MluCI AATT 4 cut(s) 391, 531, 633, 645
MluNI TGGCCA 1 cut(s) 74
MlyI GAGTC 1 cut(s) 608
MnlI CCTC 3 cut(s) 159, 291, 860
Mox20I TGGCCA 1 cut(s) 74
MscI TGGCCA 1 cut(s) 74
MseI TTAA 3 cut(s) 390, 491, 587
Msp20I TGGCCA 1 cut(s) 74
MspA1I CMGCKG 2 cut(s) 52, 664
MspR9I CCNGG 1 cut(s) 76
MvaI CCWGG 1 cut(s) 76
MvnI CGCG 1 cut(s) 41
MwoI GCNNNNNNNGC 3 cut(s) 80, 119, 192
NcoI CCATGG 1 cut(s) 340
NdeII GATC 6 cut(s) 24, 36, 159, 535, 603, 658
NlaIII CATG 5 cut(s) 160, 262, 344, 432, 730
NlaIV GGNNCC 3 cut(s) 26, 274, 439
NmuCI GTSAC 1 cut(s) 265
NspI RCATGY 1 cut(s) 730
PciI ACATGT 1 cut(s) 726
PciSI GCTCTTC 1 cut(s) 120
PcsI WCGNNNNNNNCGW 1 cut(s) 229
PfeI GAWTC 3 cut(s) 385, 399, 896
PflMI CCANNNNNTGG 1 cut(s) 866
PkrI GCNGC 3 cut(s) 51, 82, 318
PleI GAGTC 1 cut(s) 608
PpsI GAGTC 1 cut(s) 608
PscI ACATGT 1 cut(s) 726
Psp6I CCWGG 1 cut(s) 74
PspFI CCCAGC 1 cut(s) 182
PspGI CCWGG 1 cut(s) 74
PspN4I GGNNCC 3 cut(s) 26, 274, 439
PspPI GGNCC 1 cut(s) 847
PstI CTGCAG 1 cut(s) 523
PsuI RGATCY 1 cut(s) 24
PvuII CAGCTG 2 cut(s) 52, 664
RsaI GTAC 4 cut(s) 57, 470, 567, 679
RsaNI GTAC 4 cut(s) 56, 469, 566, 678
SapI GCTCTTC 1 cut(s) 120
SaqAI TTAA 3 cut(s) 390, 491, 587
SatI GCNGC 3 cut(s) 50, 81, 317
Sau3AI GATC 6 cut(s) 24, 36, 159, 535, 603, 658
Sau96I GGNCC 1 cut(s) 847
SchI GAGTC 1 cut(s) 608
ScrFI CCNGG 1 cut(s) 76
SduI GDGCHC 1 cut(s) 223
SfaNI GCATC 2 cut(s) 712, 807
SfcI CTRYAG 1 cut(s) 519
SinI GGWCC 1 cut(s) 847
Sse9I AATT 4 cut(s) 391, 531, 633, 645
SspMI CTAG 3 cut(s) 290, 695, 711
StyD4I CCNGG 1 cut(s) 74
StyI CCWWGG 2 cut(s) 340, 710
TaaI ACNGT 2 cut(s) 335, 473
TaqI TCGA 2 cut(s) 232, 829
TaqII GACCGA 1 cut(s) 835
TasI AATT 4 cut(s) 391, 531, 633, 645
TatI WGTACW 1 cut(s) 677
TfiI GAWTC 3 cut(s) 385, 399, 896
Tru1I TTAA 3 cut(s) 390, 491, 587
Tru9I TTAA 3 cut(s) 390, 491, 587
TscAI CASTG 2 cut(s) 528, 906
TseFI GTSAC 1 cut(s) 265
TseI GCWGC 3 cut(s) 49, 80, 316
Tsp45I GTSAC 1 cut(s) 265
TspDTI ATGAA 1 cut(s) 417
TspRI CASTG 2 cut(s) 528, 906
Van91I CCANNNNNTGG 1 cut(s) 866
VneI GTGCAC 1 cut(s) 219
VpaK11BI GGWCC 1 cut(s) 847
XapI RAATTY 1 cut(s) 633
XceI RCATGY 1 cut(s) 730
XcmI CCANNNNNNNNNTGG 1 cut(s) 863
XmaJI CCTAGG 1 cut(s) 710
XmiI GTMKAC 1 cut(s) 775
XspI CTAG 3 cut(s) 290, 695, 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.