Rw1G005500

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
10915660 .. 10917047
1388 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G005500.1

Sequence Viewer

Length: 1059 bp
ATGGAGAGCACTTGGTTCTTCCTGGTCTACTGTTGTATGGCAGCTAGCTGCTTAACTACGGCAGCAGCACAAACCAACACCAGCACAGACCAATCTGCTCTTCTTGCTCTCAAAGCCCATATCAGTAGTGACCCTCATAACTTGATCTTGACCAATTGGTCAACCACTACTCCCATTTGCAATTGGGTTGGCATTACATGTGGTGTACACCACCTTAGAGCCACAGCCTTGAACCTCTCCTACTTTGATCTCCAAGGCACTATTCCTCCTCAGCTAGGCAACCTATCATTTCTTGTTGATATTGACTTGAGAAATAACAGTTTCCATGGCCATTTGCCCGGGGAATTGAATCGTCTGCGCCGGTTGAAGTTCATTGACTTTGGAGCCAACAAATTTATGGGAGCCATTCCATCGTGGTTCGGGCTCTTATCTAAACTTCAATCATTATATTTGTTTGGTAATCAATTTTCAGGTTCCATACCAGCGACTATCTTCAACTTATCTGTGCTGCAAGTAATTGATTTGAGCTATAACCAACTATCAGGTAGCATACCGAGAGAAATTGGAAACTTAACAACGTTGAAGGAGATCTTCCTTGATTTTAACAATTTCACAGAAATTCCAAATGAAATAGGAGATTTAAATCAACTGGAGAAGTTGTTTGTGCAAAAAAATGCCCTAGACGGAAATATTCCTATGACTGTCTTCAATATGTCTTCTTTGATTATTTTGTCTCTACTTCAAAACAACTTGAAGGGCAGACTTCCAGATAATATGTGCCAAAATCTTCCTCATCTTCAAACGTTGGCTTTAGGTTACAACCAGTTTGATGGTCCACTTCCATCCAAATTTTGGCAATGCAACAAACTTGTTGATATATTTTTGGCTCGTAACAGCTTCAGTGGAAGTATACCCAAATGGATTGGAAACGCAACCCAGTTAAAGGAAGTTGAACTTGCGGAAAACAGTTTAACAGGTACATATACCTTTCATCATTGTGTATTCTTTAACTACTTCTACCATCAAAATTCAATATTGTGTTTTATCATTCCTATATAA

Protein Analysis

352

Amino Acids

39.47

Weight (kDa)

6.35

Isoelectric Point (pI)

28.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 29 - 67 5.9e-11 Leucine rich repeat N-terminal domain
LRR_14 PF23598 145 - 262 4.4e-11 Leucine-rich repeat region
LRR_8 PF13855 160 - 204 5.6e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 157
AccB7I CCANNNNNTGG 1 cut(s) 852
AccI GTMKAC 2 cut(s) 27, 910
AciI CCGC 1 cut(s) 959
AclI AACGTT 2 cut(s) 578, 803
AcoI YGGCCR 1 cut(s) 328
AcsI RAATTY 4 cut(s) 392, 618, 848, 1027
AcuI CTGAAG 1 cut(s) 883
AfaI GTAC 2 cut(s) 207, 979
AfiI CCNNNNNNNGG 3 cut(s) 275, 852, 943
AflIII ACRYGT 1 cut(s) 197
AjnI CCWGG 1 cut(s) 21
AjuI GAANNNNNNNTTGG 4 cut(s) 84, 116, 246, 278
AluBI AGCT 5 cut(s) 44, 48, 274, 528, 897
AluI AGCT 5 cut(s) 44, 48, 274, 528, 897
Alw21I GWGCWC 1 cut(s) 11
Alw26I GTCTC 1 cut(s) 738
Ama87I CYCGRG 1 cut(s) 338
AoxI GGCC 1 cut(s) 328
ApeKI GCWGC 5 cut(s) 41, 48, 62, 65, 508
ApoI RAATTY 4 cut(s) 392, 618, 848, 1027
AspLEI GCGC 1 cut(s) 360
AspS9I GGNCC 1 cut(s) 833
AsuC2I CCSGG 2 cut(s) 339, 340
AsuNHI GCTAGC 1 cut(s) 44
AvaI CYCGRG 1 cut(s) 338
AvaII GGWCC 1 cut(s) 833
BalI TGGCCA 1 cut(s) 330
BanII GRGCYC 1 cut(s) 426
BbsI GAAGAC 2 cut(s) 697, 708
Bbv12I GWGCWC 1 cut(s) 11
BbvCI CCTCAGC 1 cut(s) 270
BbvI GCAGC 5 cut(s) 35, 53, 74, 77, 495
BccI CCATC 4 cut(s) 418, 824, 850, 1029
BceAI ACGGC 1 cut(s) 75
BciT130I CCWGG 1 cut(s) 23
BcnI CCSGG 2 cut(s) 339, 340
BcoDI GTCTC 1 cut(s) 738
BfaI CTAG 3 cut(s) 45, 275, 680
BglII AGATCT 1 cut(s) 588
BisI GCNGC 5 cut(s) 42, 49, 63, 66, 509
BlsI GCNGC 5 cut(s) 43, 50, 64, 67, 510
Bme1390I CCNGG 3 cut(s) 23, 339, 340
Bme18I GGWCC 1 cut(s) 833
BmeT110I CYCGRG 1 cut(s) 338
BmgT120I GGNCC 1 cut(s) 833
BmiI GGNNCC 3 cut(s) 385, 403, 475
BmrFI CCNGG 3 cut(s) 23, 339, 340
BmrI ACTGGG 1 cut(s) 931
BmtI GCTAGC 1 cut(s) 48
BmuI ACTGGG 1 cut(s) 931
BpiI GAAGAC 2 cut(s) 697, 708
BpmI CTGGAG 1 cut(s) 671
Bpu10I CCTNAGC 1 cut(s) 270
BpuEI CTTGAG 1 cut(s) 328
BpuMI CCSGG 2 cut(s) 339, 340
BsaBI GATNNNNATC 1 cut(s) 642
BsaJI CCNNGG 4 cut(s) 253, 325, 338, 339
BsaXI ACNNNNNCTCC 6 cut(s) 154, 184, 250, 280, 644, 674
Bsc4I CCNNNNNNNGG 3 cut(s) 275, 852, 943
Bse118I RCCGGY 1 cut(s) 360
Bse1I ACTGG 3 cut(s) 654, 823, 937
Bse3DI GCAATG 1 cut(s) 863
Bse8I GATNNNNATC 1 cut(s) 642
BseBI CCWGG 1 cut(s) 23
BseDI CCNNGG 4 cut(s) 253, 325, 338, 339
BseGI GGATG 1 cut(s) 842
BseJI GATNNNNATC 1 cut(s) 642
BseLI CCNNNNNNNGG 3 cut(s) 275, 852, 943
BseMI GCAATG 1 cut(s) 863
BseMII CTCAG 1 cut(s) 284
BseNI ACTGG 3 cut(s) 654, 823, 937
BseRI GAGGAG 1 cut(s) 258
BseXI GCAGC 5 cut(s) 35, 53, 74, 77, 495
BshFI GGCC 1 cut(s) 330
BsiHKAI GWGCWC 1 cut(s) 11
BsiHKCI CYCGRG 1 cut(s) 338
BsiSI CCGG 2 cut(s) 339, 361
BslI CCNNNNNNNGG 3 cut(s) 275, 852, 943
BsmAI GTCTC 1 cut(s) 738
BsnI GGCC 1 cut(s) 330
BsoBI CYCGRG 1 cut(s) 338
Bsp1286I GDGCHC 2 cut(s) 11, 426
Bsp1407I TGTACA 1 cut(s) 205
Bsp143I GATC 3 cut(s) 144, 247, 588
Bsp19I CCATGG 1 cut(s) 325
BspACI CCGC 1 cut(s) 959
BspANI GGCC 1 cut(s) 330
BspCNI CTCAG 1 cut(s) 283
BspLI GGNNCC 3 cut(s) 385, 403, 475
BspOI GCTAGC 1 cut(s) 48
BspQI GCTCTTC 1 cut(s) 105
BsrDI GCAATG 1 cut(s) 863
BsrFI RCCGGY 1 cut(s) 360
BsrGI TGTACA 1 cut(s) 205
BsrI ACTGG 3 cut(s) 654, 823, 937
BssAI RCCGGY 1 cut(s) 360
BssECI CCNNGG 4 cut(s) 253, 325, 338, 339
BssMI GATC 3 cut(s) 144, 247, 588
BssNAI GTATAC 1 cut(s) 911
BssT1I CCWWGG 2 cut(s) 253, 325
Bst1107I GTATAC 1 cut(s) 911
Bst2UI CCWGG 1 cut(s) 23
Bst4CI ACNGT 4 cut(s) 32, 320, 703, 968
Bst6I CTCTTC 1 cut(s) 105
BstAUI TGTACA 1 cut(s) 205
BstC8I GCNNGC 1 cut(s) 46
BstDEI CTNAG 2 cut(s) 215, 270
BstDSI CCRYGG 1 cut(s) 325
BstENI CCTNNNNNAGG 1 cut(s) 273
BstF5I GGATG 1 cut(s) 842
BstHHI GCGC 1 cut(s) 360
BstKTI GATC 3 cut(s) 147, 250, 591
BstMAI GTCTC 1 cut(s) 738
BstMBI GATC 3 cut(s) 144, 247, 588
BstMWI GCNNNNNNNGC 2 cut(s) 104, 113
BstNI CCWGG 1 cut(s) 23
BstNSI RCATGY 1 cut(s) 201
BstSCI CCNGG 3 cut(s) 21, 337, 338
BstV1I GCAGC 5 cut(s) 35, 53, 74, 77, 495
BstV2I GAAGAC 2 cut(s) 697, 708
BstX2I RGATCY 1 cut(s) 588
BstXI CCANNNNNNTGG 1 cut(s) 830
BstYI RGATCY 1 cut(s) 588
BstZ17I GTATAC 1 cut(s) 911
BsuRI GGCC 1 cut(s) 330
BtgI CCRYGG 1 cut(s) 325
BtsCI GGATG 1 cut(s) 842
BtsIMutI CAGTG 1 cut(s) 907
Cac8I GCNNGC 1 cut(s) 46
CfoI GCGC 1 cut(s) 360
Cfr10I RCCGGY 1 cut(s) 360
Cfr13I GGNCC 1 cut(s) 833
Cfr9I CCCGGG 1 cut(s) 338
Csp6I GTAC 2 cut(s) 206, 978
CviAII CATG 2 cut(s) 198, 326
CviQI GTAC 2 cut(s) 206, 978
DdeI CTNAG 2 cut(s) 215, 270
DpnI GATC 3 cut(s) 146, 249, 590
DpnII GATC 3 cut(s) 144, 247, 588
DraI TTTAAA 1 cut(s) 642
DrdI GACNNNNNNGTC 1 cut(s) 157
DseDI GACNNNNNNGTC 1 cut(s) 157
EaeI YGGCCR 1 cut(s) 328
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
Eco130I CCWWGG 2 cut(s) 253, 325
Eco24I GRGCYC 1 cut(s) 426
Eco47I GGWCC 1 cut(s) 833
Eco57I CTGAAG 1 cut(s) 883
Eco88I CYCGRG 1 cut(s) 338
EcoNI CCTNNNNNAGG 1 cut(s) 273
EcoRII CCWGG 1 cut(s) 21
EcoT14I CCWWGG 2 cut(s) 253, 325
EcoT38I GRGCYC 1 cut(s) 426
ErhI CCWWGG 2 cut(s) 253, 325
FaeI CATG 2 cut(s) 201, 329
FalI AAGNNNNNCTT 4 cut(s) 575, 607, 939, 971
FatI CATG 2 cut(s) 197, 325
FblI GTMKAC 2 cut(s) 27, 910
Fnu4HI GCNGC 5 cut(s) 42, 49, 63, 66, 509
FokI GGATG 1 cut(s) 829
FriOI GRGCYC 1 cut(s) 426
Fsp4HI GCNGC 5 cut(s) 42, 49, 63, 66, 509
FspBI CTAG 3 cut(s) 45, 275, 680
GlaI GCGC 1 cut(s) 359
GluI GCNGC 5 cut(s) 42, 49, 63, 66, 509
GsuI CTGGAG 1 cut(s) 671
HaeIII GGCC 1 cut(s) 330
HapII CCGG 2 cut(s) 339, 361
HhaI GCGC 1 cut(s) 360
Hin1II CATG 2 cut(s) 201, 329
Hin6I GCGC 1 cut(s) 358
HinP1I GCGC 1 cut(s) 358
HincII GTYRAC 1 cut(s) 162
HindII GTYRAC 1 cut(s) 162
HinfI GANTC 1 cut(s) 349
HpaII CCGG 2 cut(s) 339, 361
Hpy166II GTNNAC 6 cut(s) 28, 162, 206, 208, 836, 911
Hpy188III TCNNGA 2 cut(s) 148, 767
Hpy8I GTNNAC 6 cut(s) 28, 162, 206, 208, 836, 911
HpyAV CCTTC 2 cut(s) 577, 748
HpyCH4III ACNGT 4 cut(s) 32, 320, 703, 968
HpyCH4IV ACGT 2 cut(s) 578, 803
HpyCH4V TGCA 4 cut(s) 180, 511, 667, 861
HpyF10VI GCNNNNNNNGC 2 cut(s) 104, 113
HpyF3I CTNAG 2 cut(s) 215, 270
HpySE526I ACGT 2 cut(s) 578, 803
Hsp92II CATG 2 cut(s) 201, 329
HspAI GCGC 1 cut(s) 358
Kzo9I GATC 3 cut(s) 144, 247, 588
LguI GCTCTTC 1 cut(s) 105
LmnI GCTCC 2 cut(s) 383, 401
Lsp1109I GCAGC 5 cut(s) 35, 53, 74, 77, 495
MaeI CTAG 3 cut(s) 45, 275, 680
MaeII ACGT 2 cut(s) 578, 803
MaeIII GTNAC 3 cut(s) 128, 815, 890
MalI GATC 3 cut(s) 146, 249, 590
MboI GATC 3 cut(s) 144, 247, 588
MboII GAAGA 8 cut(s) 10, 92, 484, 583, 697, 708, 779, 788
MfeI CAATTG 2 cut(s) 154, 181
MflI RGATCY 1 cut(s) 588
MhlI GDGCHC 2 cut(s) 11, 426
MlsI TGGCCA 1 cut(s) 330
MluNI TGGCCA 1 cut(s) 330
MnlI CCTC 5 cut(s) 144, 245, 276, 279, 801
Mox20I TGGCCA 1 cut(s) 330
MscI TGGCCA 1 cut(s) 330
MseI TTAA 7 cut(s) 53, 572, 603, 641, 941, 971, 1008
MslI CAYNNNNRTG 1 cut(s) 996
Msp20I TGGCCA 1 cut(s) 330
MspI CCGG 2 cut(s) 339, 361
MspR9I CCNGG 3 cut(s) 23, 339, 340
MunI CAATTG 2 cut(s) 154, 181
MvaI CCWGG 1 cut(s) 23
MwoI GCNNNNNNNGC 2 cut(s) 104, 113
NciI CCSGG 2 cut(s) 339, 340
NcoI CCATGG 1 cut(s) 325
NdeII GATC 3 cut(s) 144, 247, 588
NheI GCTAGC 1 cut(s) 44
NlaIII CATG 2 cut(s) 201, 329
NlaIV GGNNCC 3 cut(s) 385, 403, 475
NmuCI GTSAC 1 cut(s) 128
NspI RCATGY 1 cut(s) 201
PciI ACATGT 1 cut(s) 197
PciSI GCTCTTC 1 cut(s) 105
PfeI GAWTC 1 cut(s) 349
PflMI CCANNNNNTGG 1 cut(s) 852
PkrI GCNGC 5 cut(s) 43, 50, 64, 67, 510
PscI ACATGT 1 cut(s) 197
Psp1406I AACGTT 2 cut(s) 578, 803
Psp6I CCWGG 1 cut(s) 21
PspGI CCWGG 1 cut(s) 21
PspN4I GGNNCC 3 cut(s) 385, 403, 475
PspPI GGNCC 1 cut(s) 833
PsrI GAACNNNNNNTAC 2 cut(s) 224, 256
PsuI RGATCY 1 cut(s) 588
RsaI GTAC 2 cut(s) 207, 979
RsaNI GTAC 2 cut(s) 206, 978
RseI CAYNNNNRTG 1 cut(s) 996
SapI GCTCTTC 1 cut(s) 105
SaqAI TTAA 7 cut(s) 53, 572, 603, 641, 941, 971, 1008
SatI GCNGC 5 cut(s) 42, 49, 63, 66, 509
Sau3AI GATC 3 cut(s) 144, 247, 588
Sau96I GGNCC 1 cut(s) 833
ScrFI CCNGG 3 cut(s) 23, 339, 340
SduI GDGCHC 2 cut(s) 11, 426
SinI GGWCC 1 cut(s) 833
SmaI CCCGGG 1 cut(s) 340
SmiI ATTTAAAT 1 cut(s) 642
SmiMI CAYNNNNRTG 1 cut(s) 996
SmlI CTYRAG 1 cut(s) 307
SmoI CTYRAG 1 cut(s) 307
SsiI CCGC 1 cut(s) 959
SspI AATATT 2 cut(s) 691, 1035
SspMI CTAG 3 cut(s) 45, 275, 680
StyD4I CCNGG 3 cut(s) 21, 337, 338
StyI CCWWGG 2 cut(s) 253, 325
SwaI ATTTAAAT 1 cut(s) 642
TaaI ACNGT 4 cut(s) 32, 320, 703, 968
TaiI ACGT 2 cut(s) 581, 806
TatI WGTACW 1 cut(s) 205
TfiI GAWTC 1 cut(s) 349
Tru1I TTAA 7 cut(s) 53, 572, 603, 641, 941, 971, 1008
Tru9I TTAA 7 cut(s) 53, 572, 603, 641, 941, 971, 1008
TscAI CASTG 1 cut(s) 907
TseFI GTSAC 1 cut(s) 128
TseI GCWGC 5 cut(s) 41, 48, 62, 65, 508
Tsp45I GTSAC 1 cut(s) 128
TspDTI ATGAA 3 cut(s) 361, 642, 980
TspGWI ACGGA 1 cut(s) 699
TspMI CCCGGG 1 cut(s) 338
TspRI CASTG 1 cut(s) 907
Van91I CCANNNNNTGG 1 cut(s) 852
VpaK11BI GGWCC 1 cut(s) 833
XagI CCTNNNNNAGG 1 cut(s) 273
XapI RAATTY 4 cut(s) 392, 618, 848, 1027
XceI RCATGY 1 cut(s) 201
XcmI CCANNNNNNNNNTGG 2 cut(s) 394, 849
XmaI CCCGGG 1 cut(s) 338
XmiI GTMKAC 2 cut(s) 27, 910
XspI CTAG 3 cut(s) 45, 275, 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.