Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016457.1

Orthogroup ID

OG0000229

Physical Location & Seq

Genomic Coordinates Forward (+)

1475 .. 2041

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016457.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

atggagatagttacttggttcttcctggtatacttgatctgttgtgaggcggctagctgcttgactatggaagcacaaaccaaccttaacaccaccacagaccggtctgctcttcttgctctaaaagcccatatcaccagtgaccctcaaaacatgatcctcaccaattggtcaaccaccacccctatttgcaactgggttggcgtcatttgtggtgcacgccatcatcgagtcgcagagttgaacctctcttactttggtctcgcaggcaccattcctcctgagctaggcaacttatcattgcttgttgatctggacatccaaaataacagtttccagggtaccttgcctcaagaattggcttgcctgcgtcggttgaagtttataagattgggaaacaacaagtttattggagtgataccgtcatggtttgggtccttattcaaacttcaagtattcaatttgtctggtaatcaattttcaggttccataccagctacaatcttcaacttatctgctctgcaaagaattaatctgagttataaccaactctcaggtatgaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04016 ko04064 ko04620 ko04621 ko04624 ko04626 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04016 map04064 map04620 map04621 map04624 map04626 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

188

Amino Acids

20.84

Weight (kDa)

7.62

Isoelectric Point (pI)

25.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000229)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica	MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica	Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis	pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis	RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata	RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora	Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii	Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa	Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha	Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana	Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	386, 543
Acc65I	GGTACC	1 cut(s)	341
AccB1I	GGYRCC	2 cut(s)	269, 341
AccI	GTMKAC	1 cut(s)	30
AciI	CCGC	1 cut(s)	50
AclWI	GGATC	1 cut(s)	151
AcyI	GRCGYC	1 cut(s)	204
AfaI	GTAC	1 cut(s)	343
AfiI	CCNNNNNNNGG	2 cut(s)	102, 287
AgeI	ACCGGT	1 cut(s)	102
AgsI	TTSAA	6 cut(s)	244, 379, 445, 452, 460, 508
AjnI	CCWGG	2 cut(s)	24, 336
AluBI	AGCT	3 cut(s)	57, 286, 497
AluI	AGCT	3 cut(s)	57, 286, 497
Alw21I	GWGCWC	1 cut(s)	220
Alw26I	GTCTC	1 cut(s)	266
Alw44I	GTGCAC	1 cut(s)	216
AlwI	GGATC	1 cut(s)	151
ApaLI	GTGCAC	1 cut(s)	216
ApeKI	GCWGC	1 cut(s)	57
AseI	ATTAAT	1 cut(s)	531
AsiGI	ACCGGT	1 cut(s)	102
Asp718I	GGTACC	1 cut(s)	341
AspS9I	GGNCC	1 cut(s)	435
AsuHPI	GGTGA	2 cut(s)	127, 154
AsuNHI	GCTAGC	1 cut(s)	53
AvaII	GGWCC	1 cut(s)	435
BaeGI	GKGCMC	1 cut(s)	220
BanI	GGYRCC	2 cut(s)	269, 341
Bbv12I	GWGCWC	1 cut(s)	220
BbvI	GCAGC	1 cut(s)	44
BccI	CCATC	1 cut(s)	231
BciT130I	CCWGG	2 cut(s)	26, 338
BcoDI	GTCTC	1 cut(s)	266
BfaI	CTAG	2 cut(s)	54, 287
BisI	GCNGC	2 cut(s)	51, 58
BlsI	GCNGC	2 cut(s)	52, 59
Bme1390I	CCNGG	2 cut(s)	26, 338
Bme18I	GGWCC	1 cut(s)	435
BmgT120I	GGNCC	1 cut(s)	435
BmiI	GGNNCC	4 cut(s)	271, 343, 436, 487
BmrFI	CCNGG	2 cut(s)	26, 338
BmrI	ACTGGG	1 cut(s)	205
BmtI	GCTAGC	1 cut(s)	57
BmuI	ACTGGG	1 cut(s)	205
Bpu10I	CCTNAGC	1 cut(s)	282
BpuEI	CTTGAG	1 cut(s)	336
BsaHI	GRCGYC	1 cut(s)	204
BsaI	GGTCTC	1 cut(s)	266
BsaJI	CCNNGG	1 cut(s)	337
BsaWI	WCCGGW	1 cut(s)	102
BsaXI	ACNNNNNCTCC	2 cut(s)	262, 292
Bsc4I	CCNNNNNNNGG	2 cut(s)	102, 287
Bse118I	RCCGGY	1 cut(s)	102
Bse1I	ACTGG	2 cut(s)	138, 200
Bse3DI	GCAATG	1 cut(s)	299
BseBI	CCWGG	2 cut(s)	26, 338
BseDI	CCNNGG	1 cut(s)	337
BseGI	GGATG	1 cut(s)	318
BseLI	CCNNNNNNNGG	2 cut(s)	102, 287
BseMI	GCAATG	1 cut(s)	299
BseMII	CTCAG	3 cut(s)	273, 527, 567
BseNI	ACTGG	2 cut(s)	138, 200
BseSI	GKGCMC	1 cut(s)	220
BseXI	GCAGC	1 cut(s)	44
BshNI	GGYRCC	2 cut(s)	269, 341
BshTI	ACCGGT	1 cut(s)	102
BsiHKAI	GWGCWC	1 cut(s)	220
BsiSI	CCGG	1 cut(s)	103
BslI	CCNNNNNNNGG	2 cut(s)	102, 287
BsmAI	GTCTC	1 cut(s)	266
Bso31I	GGTCTC	1 cut(s)	266
Bsp1286I	GDGCHC	1 cut(s)	220
Bsp143I	GATC	3 cut(s)	36, 156, 310
BspACI	CCGC	1 cut(s)	50
BspCNI	CTCAG	3 cut(s)	274, 528, 566
BspLI	GGNNCC	4 cut(s)	271, 343, 436, 487
BspOI	GCTAGC	1 cut(s)	57
BspPI	GGATC	1 cut(s)	151
BspQI	GCTCTTC	1 cut(s)	117
BspT107I	GGYRCC	2 cut(s)	269, 341
BspTNI	GGTCTC	1 cut(s)	266
BsrDI	GCAATG	1 cut(s)	299
BsrFI	RCCGGY	1 cut(s)	102
BsrI	ACTGG	2 cut(s)	138, 200
BssAI	RCCGGY	1 cut(s)	102
BssECI	CCNNGG	1 cut(s)	337
BssMI	GATC	3 cut(s)	36, 156, 310
BssNAI	GTATAC	1 cut(s)	31
BssNI	GRCGYC	1 cut(s)	204
Bst1107I	GTATAC	1 cut(s)	31
Bst2UI	CCWGG	2 cut(s)	26, 338
Bst4CI	ACNGT	2 cut(s)	332, 423
Bst6I	CTCTTC	1 cut(s)	117
BstACI	GRCGYC	1 cut(s)	204
BstC8I	GCNNGC	5 cut(s)	55, 220, 268, 364, 368
BstDEI	CTNAG	3 cut(s)	282, 536, 553
BstENI	CCTNNNNNAGG	1 cut(s)	285
BstF5I	GGATG	1 cut(s)	318
BstKTI	GATC	3 cut(s)	39, 159, 313
BstMAI	GTCTC	1 cut(s)	266
BstMBI	GATC	3 cut(s)	36, 156, 310
BstMWI	GCNNNNNNNGC	2 cut(s)	116, 125
BstNI	CCWGG	2 cut(s)	26, 338
BstSCI	CCNGG	2 cut(s)	24, 336
BstSLI	GKGCMC	1 cut(s)	220
BstV1I	GCAGC	1 cut(s)	44
BstZ17I	GTATAC	1 cut(s)	31
BtsCI	GGATG	1 cut(s)	318
BtsIMutI	CAGTG	1 cut(s)	145
Cac8I	GCNNGC	5 cut(s)	55, 220, 268, 364, 368
Cfr10I	RCCGGY	1 cut(s)	102
Cfr13I	GGNCC	1 cut(s)	435
CseI	GACGC	2 cut(s)	193, 359
Csp6I	GTAC	1 cut(s)	342
CspAI	ACCGGT	1 cut(s)	102
CviAII	CATG	2 cut(s)	154, 426
CviJI	RGCY	6 cut(s)	53, 57, 128, 286, 362, 497
CviKI_1	RGCY	6 cut(s)	53, 57, 128, 286, 362, 497
CviQI	GTAC	1 cut(s)	342
DdeI	CTNAG	3 cut(s)	282, 536, 553
DpnI	GATC	3 cut(s)	38, 158, 312
DpnII	GATC	3 cut(s)	36, 156, 310
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
Eco31I	GGTCTC	1 cut(s)	266
Eco47I	GGWCC	1 cut(s)	435
EcoNI	CCTNNNNNAGG	1 cut(s)	285
EcoO109I	RGGNCCY	1 cut(s)	435
EcoRII	CCWGG	2 cut(s)	24, 336
FaeI	CATG	2 cut(s)	157, 429
FaiI	YATR	9 cut(s)	31, 68, 132, 155, 386, 427, 491, 543, 560
FatI	CATG	2 cut(s)	153, 425
FblI	GTMKAC	1 cut(s)	30
Fnu4HI	GCNGC	2 cut(s)	51, 58
FokI	GGATG	1 cut(s)	305
Fsp4HI	GCNGC	2 cut(s)	51, 58
FspBI	CTAG	2 cut(s)	54, 287
GluI	GCNGC	2 cut(s)	51, 58
HapII	CCGG	1 cut(s)	103
HgaI	GACGC	2 cut(s)	193, 359
Hin1I	GRCGYC	1 cut(s)	204
Hin1II	CATG	2 cut(s)	157, 429
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HinfI	GANTC	1 cut(s)	231
HpaII	CCGG	1 cut(s)	103
HphI	GGTGA	2 cut(s)	127, 154
Hpy166II	GTNNAC	3 cut(s)	31, 174, 218
Hpy188I	TCNGA	1 cut(s)	537
Hpy188III	TCNNGA	3 cut(s)	281, 314, 353
Hpy8I	GTNNAC	3 cut(s)	31, 174, 218
Hpy99I	CGWCG	1 cut(s)	375
HpyCH4III	ACNGT	2 cut(s)	332, 423
HpyCH4V	TGCA	3 cut(s)	192, 218, 523
HpyF10VI	GCNNNNNNNGC	2 cut(s)	116, 125
HpyF3I	CTNAG	3 cut(s)	282, 536, 553
Hsp92I	GRCGYC	1 cut(s)	204
Hsp92II	CATG	2 cut(s)	157, 429
KpnI	GGTACC	1 cut(s)	345
Kzo9I	GATC	3 cut(s)	36, 156, 310
LguI	GCTCTTC	1 cut(s)	117
Lsp1109I	GCAGC	1 cut(s)	44
MaeI	CTAG	2 cut(s)	54, 287
MaeIII	GTNAC	2 cut(s)	10, 140
MalI	GATC	3 cut(s)	38, 158, 312
MboI	GATC	3 cut(s)	36, 156, 310
MboII	GAAGA	3 cut(s)	13, 104, 496
MfeI	CAATTG	1 cut(s)	166
MhlI	GDGCHC	1 cut(s)	220
MluCI	AATT	5 cut(s)	166, 356, 460, 476, 528
MlyI	GAGTC	1 cut(s)	240
MnlI	CCTC	6 cut(s)	40, 156, 170, 257, 288, 360
MseI	TTAA	2 cut(s)	87, 531
MspI	CCGG	1 cut(s)	103
MspR9I	CCNGG	2 cut(s)	26, 338
MunI	CAATTG	1 cut(s)	166
MvaI	CCWGG	2 cut(s)	26, 338
MwoI	GCNNNNNNNGC	2 cut(s)	116, 125
NdeII	GATC	3 cut(s)	36, 156, 310
NheI	GCTAGC	1 cut(s)	53
NlaIII	CATG	2 cut(s)	157, 429
NlaIV	GGNNCC	4 cut(s)	271, 343, 436, 487
NmuCI	GTSAC	1 cut(s)	140
PciSI	GCTCTTC	1 cut(s)	117
PcsI	WCGNNNNNNNCGW	1 cut(s)	226
PinAI	ACCGGT	1 cut(s)	102
PkrI	GCNGC	2 cut(s)	52, 59
PleI	GAGTC	1 cut(s)	239
PpsI	GAGTC	1 cut(s)	239
PpuMI	RGGWCCY	1 cut(s)	435
PshBI	ATTAAT	1 cut(s)	531
PsiI	TTATAA	2 cut(s)	386, 543
Psp5II	RGGWCCY	1 cut(s)	435
Psp6I	CCWGG	2 cut(s)	24, 336
PspGI	CCWGG	2 cut(s)	24, 336
PspN4I	GGNNCC	4 cut(s)	271, 343, 436, 487
PspPI	GGNCC	1 cut(s)	435
PspPPI	RGGWCCY	1 cut(s)	435
PsrI	GAACNNNNNNTAC	2 cut(s)	236, 268
RsaI	GTAC	1 cut(s)	343
RsaNI	GTAC	1 cut(s)	342
SapI	GCTCTTC	1 cut(s)	117
SaqAI	TTAA	2 cut(s)	87, 531
SatI	GCNGC	2 cut(s)	51, 58
Sau3AI	GATC	3 cut(s)	36, 156, 310
Sau96I	GGNCC	1 cut(s)	435
SchI	GAGTC	1 cut(s)	240
ScrFI	CCNGG	2 cut(s)	26, 338
SduI	GDGCHC	1 cut(s)	220
SetI	ASST	8 cut(s)	59, 87, 249, 288, 347, 487, 499, 559
SinI	GGWCC	1 cut(s)	435
SmlI	CTYRAG	1 cut(s)	351
SmoI	CTYRAG	1 cut(s)	351
Sse9I	AATT	5 cut(s)	166, 356, 460, 476, 528
SsiI	CCGC	1 cut(s)	50
SspMI	CTAG	2 cut(s)	54, 287
StyD4I	CCNGG	2 cut(s)	24, 336
TaaI	ACNGT	2 cut(s)	332, 423
TaqI	TCGA	1 cut(s)	229
TasI	AATT	5 cut(s)	166, 356, 460, 476, 528
TauI	GCSGC	1 cut(s)	53
Tru1I	TTAA	2 cut(s)	87, 531
Tru9I	TTAA	2 cut(s)	87, 531
TscAI	CASTG	1 cut(s)	145
TseFI	GTSAC	1 cut(s)	140
TseI	GCWGC	1 cut(s)	57
Tsp45I	GTSAC	1 cut(s)	140
TspRI	CASTG	1 cut(s)	145
VneI	GTGCAC	1 cut(s)	216
VpaK11BI	GGWCC	1 cut(s)	435
VspI	ATTAAT	1 cut(s)	531
XagI	CCTNNNNNAGG	1 cut(s)	285
XmiI	GTMKAC	1 cut(s)	30
XspI	CTAG	2 cut(s)	54, 287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.