MD10G1265200.v1.1

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000229
Physical Location & Seq
Forward (+)
35872342 .. 35872920
579 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1265200.v1.1.491

Sequence Viewer

Length: 579 bp
ATGATTCATATCAGTTTAAGTTGGGGATTGTTTGGGAAATGGATTTTCTTAAACATAGGATATTTATCAAGTACGTTAGCAGCACAAATTACCGACGCCACGACGGATCAGTCTGCTCTGGTTGCTCTCAAATCCCATATCACCAATGATCCACAAAACATCTTGACAATCAACTGGTCCGCTACTACCTCCGTTTGCAGTTGGGTTGGCGTTACTTGCAACCTACGCCACCATAGAGTCATGACCTTGAACCTCTCTTTCATGATTCTCACTGGAACCATTCCACCAAATCTAGGAAACCTTTCATTTCTTGTTAGGTGGAGCCTCAGAAATAACAGTTTCCACGGTACCTTGCCTCATGAATTAACCCGTTTACGCGGACTGAAGTTGATTATCTTTACAAACAACAACTTTACGGGAAATATTCCACCATGGTTTGAGTCCTTATCCAAGCTTCAAGCCTTCAGTTTAGATGGCAACCAGTTTTCAGGTTCTATACCCACTGCTATCTGTAACTTACCTGCACTGCAACTAATTATAATGGAATTGAGGGAAAATCAGCTGTCAGGTAATGCCTAG

Protein Analysis

193

Amino Acids

21.31

Weight (kDa)

9.02

Isoelectric Point (pI)

32.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 35 - 74 3.3e-10 Leucine rich repeat N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 539
AasI GACNNNNNNGTC 1 cut(s) 109
Acc36I ACCTGC 1 cut(s) 529
Acc65I GGTACC 1 cut(s) 347
AccB1I GGYRCC 1 cut(s) 347
AccII CGCG 1 cut(s) 378
AciI CCGC 2 cut(s) 180, 378
AclWI GGATC 2 cut(s) 114, 143
AcuI CTGAAG 2 cut(s) 404, 448
AcyI GRCGYC 1 cut(s) 96
AfaI GTAC 2 cut(s) 73, 349
AfiI CCNNNNNNNGG 1 cut(s) 293
AgsI TTSAA 2 cut(s) 250, 458
AluBI AGCT 2 cut(s) 454, 562
AluI AGCT 2 cut(s) 454, 562
AlwI GGATC 2 cut(s) 114, 143
ApeKI GCWGC 1 cut(s) 80
Asp700I GAANNNNTTC 1 cut(s) 301
Asp718I GGTACC 1 cut(s) 347
AspS9I GGNCC 1 cut(s) 177
AsuHPI GGTGA 1 cut(s) 133
AvaII GGWCC 1 cut(s) 177
BanI GGYRCC 1 cut(s) 347
BbvI GCAGC 1 cut(s) 92
BccI CCATC 1 cut(s) 467
BfaI CTAG 2 cut(s) 293, 577
BfuAI ACCTGC 1 cut(s) 529
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
Bme18I GGWCC 1 cut(s) 177
BmgT120I GGNCC 1 cut(s) 177
BmiI GGNNCC 3 cut(s) 277, 323, 349
BsaBI GATNNNNATC 2 cut(s) 8, 64
BsaHI GRCGYC 1 cut(s) 96
BsaJI CCNNGG 2 cut(s) 343, 431
Bsc4I CCNNNNNNNGG 1 cut(s) 293
Bse1I ACTGG 3 cut(s) 179, 277, 481
Bse8I GATNNNNATC 2 cut(s) 8, 64
BseDI CCNNGG 2 cut(s) 343, 431
BseJI GATNNNNATC 2 cut(s) 8, 64
BseLI CCNNNNNNNGG 1 cut(s) 293
BseMII CTCAG 1 cut(s) 340
BseNI ACTGG 3 cut(s) 179, 277, 481
BseXI GCAGC 1 cut(s) 92
BsgI GTGCAG 1 cut(s) 507
Bsh1236I CGCG 1 cut(s) 378
BshNI GGYRCC 1 cut(s) 347
BslI CCNNNNNNNGG 1 cut(s) 293
Bsp143I GATC 2 cut(s) 106, 148
Bsp19I CCATGG 1 cut(s) 431
BspACI CCGC 2 cut(s) 180, 378
BspCNI CTCAG 1 cut(s) 339
BspFNI CGCG 1 cut(s) 378
BspHI TCATGA 3 cut(s) 240, 261, 358
BspLI GGNNCC 3 cut(s) 277, 323, 349
BspMI ACCTGC 1 cut(s) 529
BspPI GGATC 2 cut(s) 114, 143
BspT107I GGYRCC 1 cut(s) 347
BsrI ACTGG 3 cut(s) 179, 277, 481
BssECI CCNNGG 2 cut(s) 343, 431
BssMI GATC 2 cut(s) 106, 148
BssNI GRCGYC 1 cut(s) 96
BssT1I CCWWGG 1 cut(s) 431
Bst4CI ACNGT 2 cut(s) 338, 347
BstACI GRCGYC 1 cut(s) 96
BstDEI CTNAG 1 cut(s) 326
BstDSI CCRYGG 2 cut(s) 343, 431
BstFNI CGCG 1 cut(s) 378
BstKTI GATC 2 cut(s) 109, 151
BstMBI GATC 2 cut(s) 106, 148
BstMWI GCNNNNNNNGC 3 cut(s) 122, 216, 225
BstUI CGCG 1 cut(s) 378
BstV1I GCAGC 1 cut(s) 92
BtgI CCRYGG 2 cut(s) 343, 431
BtsI GCAGTG 2 cut(s) 501, 524
BtsIMutI CAGTG 3 cut(s) 270, 501, 524
BveI ACCTGC 1 cut(s) 529
CciI TCATGA 3 cut(s) 240, 261, 358
Cfr13I GGNCC 1 cut(s) 177
CseI GACGC 1 cut(s) 104
Csp6I GTAC 2 cut(s) 72, 348
CviAII CATG 4 cut(s) 241, 262, 359, 432
CviJI RGCY 4 cut(s) 324, 454, 461, 562
CviKI_1 RGCY 4 cut(s) 324, 454, 461, 562
CviQI GTAC 2 cut(s) 72, 348
DdeI CTNAG 1 cut(s) 326
DpnI GATC 2 cut(s) 108, 150
DpnII GATC 2 cut(s) 106, 148
DrdI GACNNNNNNGTC 1 cut(s) 109
DseDI GACNNNNNNGTC 1 cut(s) 109
Eco130I CCWWGG 1 cut(s) 431
Eco47I GGWCC 1 cut(s) 177
Eco57I CTGAAG 2 cut(s) 404, 448
EcoT14I CCWWGG 1 cut(s) 431
ErhI CCWWGG 1 cut(s) 431
FaeI CATG 4 cut(s) 244, 265, 362, 435
FatI CATG 4 cut(s) 240, 261, 358, 431
Fnu4HI GCNGC 1 cut(s) 81
Fsp4HI GCNGC 1 cut(s) 81
FspBI CTAG 2 cut(s) 293, 577
GluI GCNGC 1 cut(s) 81
HgaI GACGC 1 cut(s) 104
Hin1I GRCGYC 1 cut(s) 96
Hin1II CATG 4 cut(s) 244, 265, 362, 435
HindIII AAGCTT 1 cut(s) 452
HinfI GANTC 4 cut(s) 4, 237, 265, 440
HphI GGTGA 1 cut(s) 133
Hpy166II GTNNAC 1 cut(s) 374
Hpy188I TCNGA 1 cut(s) 329
Hpy188III TCNNGA 4 cut(s) 163, 241, 262, 359
Hpy8I GTNNAC 1 cut(s) 374
Hpy99I CGWCG 2 cut(s) 98, 106
HpyAV CCTTC 1 cut(s) 472
HpyCH4III ACNGT 2 cut(s) 338, 347
HpyCH4IV ACGT 1 cut(s) 74
HpyCH4V TGCA 4 cut(s) 198, 219, 524, 529
HpyF10VI GCNNNNNNNGC 3 cut(s) 122, 216, 225
HpyF3I CTNAG 1 cut(s) 326
HpySE526I ACGT 1 cut(s) 74
Hsp92I GRCGYC 1 cut(s) 96
Hsp92II CATG 4 cut(s) 244, 265, 362, 435
KpnI GGTACC 1 cut(s) 351
Kzo9I GATC 2 cut(s) 106, 148
LmnI GCTCC 1 cut(s) 321
LpnPI CCDG 7 cut(s) 104, 160, 258, 474, 494, 534, 552
Lsp1109I GCAGC 1 cut(s) 92
MaeI CTAG 2 cut(s) 293, 577
MaeII ACGT 1 cut(s) 74
MaeIII GTNAC 2 cut(s) 211, 512
MalI GATC 2 cut(s) 108, 150
MboI GATC 2 cut(s) 106, 148
MluCI AATT 4 cut(s) 87, 362, 534, 545
MlyI GAGTC 2 cut(s) 246, 449
MnlI CCTC 5 cut(s) 199, 263, 335, 366, 543
MroXI GAANNNNTTC 1 cut(s) 301
MseI TTAA 3 cut(s) 17, 50, 365
MspA1I CMGCKG 1 cut(s) 562
MvnI CGCG 1 cut(s) 378
MwoI GCNNNNNNNGC 3 cut(s) 122, 216, 225
NcoI CCATGG 1 cut(s) 431
NdeII GATC 2 cut(s) 106, 148
NlaIII CATG 4 cut(s) 244, 265, 362, 435
NlaIV GGNNCC 3 cut(s) 277, 323, 349
PagI TCATGA 3 cut(s) 240, 261, 358
PdmI GAANNNNTTC 1 cut(s) 301
PfeI GAWTC 2 cut(s) 4, 265
PkrI GCNGC 1 cut(s) 82
PleI GAGTC 2 cut(s) 245, 448
PpsI GAGTC 2 cut(s) 245, 448
PsiI TTATAA 1 cut(s) 539
PspN4I GGNNCC 3 cut(s) 277, 323, 349
PspPI GGNCC 1 cut(s) 177
PvuII CAGCTG 1 cut(s) 562
RsaI GTAC 2 cut(s) 73, 349
RsaNI GTAC 2 cut(s) 72, 348
SaqAI TTAA 3 cut(s) 17, 50, 365
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 2 cut(s) 106, 148
Sau96I GGNCC 1 cut(s) 177
SchI GAGTC 2 cut(s) 246, 449
SinI GGWCC 1 cut(s) 177
Sse9I AATT 4 cut(s) 87, 362, 534, 545
SsiI CCGC 2 cut(s) 180, 378
SspI AATATT 1 cut(s) 424
SspMI CTAG 2 cut(s) 293, 577
StyI CCWWGG 1 cut(s) 431
TaaI ACNGT 2 cut(s) 338, 347
TaiI ACGT 1 cut(s) 77
TasI AATT 4 cut(s) 87, 362, 534, 545
TfiI GAWTC 2 cut(s) 4, 265
Tru1I TTAA 3 cut(s) 17, 50, 365
Tru9I TTAA 3 cut(s) 17, 50, 365
TscAI CASTG 3 cut(s) 277, 508, 531
TseI GCWGC 1 cut(s) 80
TspDTI ATGAA 3 cut(s) 250, 294, 375
TspGWI ACGGA 2 cut(s) 119, 181
TspRI CASTG 3 cut(s) 277, 508, 531
VpaK11BI GGWCC 1 cut(s) 177
XmnI GAANNNNTTC 1 cut(s) 301
XspI CTAG 2 cut(s) 293, 577
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.