Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000229

Physical Location & Seq

Genomic Coordinates Reverse (-)

26141874 .. 26144659

Gene Structure 2786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG248300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 988 bp

ATGGAGAGAGTTACTTGGTTCTTCCGGATATACTTGATCTGTTGTGAGGTGGCTAGCTGCGTAACTATGGCAGCACAAACCAACCTTAACATCACCACAGACCAGTTTGCTCTTCTTGCTCTCAAAGCCCGTATCACCAATGACCCTCAAAACATAGTCTTCACCAACTGGTCAACCACAACCCCTGTTTGTAACTGGGTTGGAGTCACTTGTGGTGCACGCCATCATCGAATCGCAGAGTTGAACGTATCTTACTTTGGTCTCACAGGCACCATTCCTCCAGAGCTAGGCAACTTATCTTTTCTTGTTGTTCTGGACTTCAAAAATAATAGTTTTCACGGTATCTTGCCTCAAGAATTGGCTTGCCTGCGTCGGTTGAAGTTTATAAGATTGGGAAACAACAAGTTCATGGGAGTCATTCCATCATGGTTTGGCTCCTTATTCAAACTTCAAGTATTCGATTTGTCTGGTAATCAATTTTCAGGTTCCATACCAGCTACAATCTTCAACTTATCTGCTCTGCAAAGAATTAATCTTAGTTATAACCAACTCTCAGGTAGAATATCCAGAGAAATGGGGAACCTAACAATGTTGAAGGAGATCTACCTTGATAGTAATAATTTTGAAGAAATTCCAAATGAGATCGGCACTTTGAATCATCTGGAAAAATTGTCTGTGCAACAGAATTCCTTAAAAGGGCCCATCCCTATGACTATCTTCAACATGTCATCTTTGACTATTGTAACTTTCTATGGTAATAATTTGAATGGTAGAATTCCGGACAATATTTGTCAAAATCTTTCAAATATTCAATGGTTGAATTTGGGTGCCAATCAATTTAATGGTCCACTTCCTTCCATATTTGGGCAATGCAAACAACTTCTTCGATTAGACTTGGGGGCTAATAGCTTGACAGGTAGAATATCCAGAGAAATCGGAAACCTAACAATGTTGAAGGAGATCGAGCTTGGTAGTAATAATTTTGAAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04016 ko04064 ko04620 ko04621 ko04624 ko04626 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04016 map04064 map04620 map04621 map04624 map04626 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

329

Amino Acids

36.87

Weight (kDa)

8.42

Isoelectric Point (pI)

27.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	33 - 71	7.3e-10	Leucine rich repeat N-terminal domain
LRR_14	PF23598	85 - 178	2e-07	Leucine-rich repeat region
LRR_8	PF13855	131 - 184	1.8e-08	Leucine rich repeat
LRR_14	PF23598	189 - 271	6.2e-08	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000229)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica	MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica	Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis	pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis	RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata	RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora	Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii	Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa	Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha	Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana	Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	386, 543
AccB1I	GGYRCC	2 cut(s)	269, 827
AccIII	TCCGGA	2 cut(s)	24, 778
AcsI	RAATTY	4 cut(s)	630, 685, 774, 820
AfiI	CCNNNNNNNGG	3 cut(s)	287, 696, 864
AflIII	ACRYGT	1 cut(s)	723
AluBI	AGCT	5 cut(s)	57, 286, 497, 909, 967
AluI	AGCT	5 cut(s)	57, 286, 497, 909, 967
Alw21I	GWGCWC	1 cut(s)	220
Alw26I	GTCTC	1 cut(s)	266
Alw44I	GTGCAC	1 cut(s)	216
Aor13HI	TCCGGA	2 cut(s)	24, 778
AoxI	GGCC	1 cut(s)	698
ApaI	GGGCCC	1 cut(s)	702
ApaLI	GTGCAC	1 cut(s)	216
ApeKI	GCWGC	2 cut(s)	57, 71
ApoI	RAATTY	4 cut(s)	630, 685, 774, 820
AseI	ATTAAT	1 cut(s)	531
Asp700I	GAANNNNTTC	1 cut(s)	630
AspS9I	GGNCC	3 cut(s)	698, 699, 845
AsuHPI	GGTGA	3 cut(s)	85, 127, 154
AsuNHI	GCTAGC	1 cut(s)	53
AvaII	GGWCC	1 cut(s)	845
BaeGI	GKGCMC	2 cut(s)	220, 702
BanI	GGYRCC	2 cut(s)	269, 827
BanII	GRGCYC	1 cut(s)	702
BarI	GAAGNNNNNNTAC	2 cut(s)	587, 619
BbsI	GAAGAC	1 cut(s)	151
Bbv12I	GWGCWC	1 cut(s)	220
BbvI	GCAGC	2 cut(s)	44, 83
BccI	CCATC	3 cut(s)	231, 430, 710
BcoDI	GTCTC	1 cut(s)	266
BfaI	CTAG	2 cut(s)	54, 287
BglII	AGATCT	1 cut(s)	600
BisI	GCNGC	2 cut(s)	58, 72
BlsI	GCNGC	2 cut(s)	59, 73
Bme18I	GGWCC	1 cut(s)	845
BmgT120I	GGNCC	3 cut(s)	698, 699, 845
BmiI	GGNNCC	6 cut(s)	271, 436, 487, 581, 700, 829
BmrI	ACTGGG	1 cut(s)	205
BmtI	GCTAGC	1 cut(s)	57
BmuI	ACTGGG	1 cut(s)	205
BpiI	GAAGAC	1 cut(s)	151
BpmI	CTGGAG	1 cut(s)	264
BpuEI	CTTGAG	1 cut(s)	336
BsaI	GGTCTC	1 cut(s)	266
BsaWI	WCCGGW	2 cut(s)	24, 778
BsaXI	ACNNNNNCTCC	2 cut(s)	262, 292
Bsc4I	CCNNNNNNNGG	3 cut(s)	287, 696, 864
Bse1I	ACTGG	3 cut(s)	103, 173, 200
Bse3DI	GCAATG	1 cut(s)	875
BseAI	TCCGGA	2 cut(s)	24, 778
BseGI	GGATG	1 cut(s)	702
BseLI	CCNNNNNNNGG	3 cut(s)	287, 696, 864
BseMI	GCAATG	1 cut(s)	875
BseMII	CTCAG	1 cut(s)	567
BseNI	ACTGG	3 cut(s)	103, 173, 200
BseSI	GKGCMC	2 cut(s)	220, 702
BseXI	GCAGC	2 cut(s)	44, 83
BshFI	GGCC	1 cut(s)	700
BshNI	GGYRCC	2 cut(s)	269, 827
BsiHKAI	GWGCWC	1 cut(s)	220
BsiSI	CCGG	2 cut(s)	25, 779
BslI	CCNNNNNNNGG	3 cut(s)	287, 696, 864
BsmAI	GTCTC	1 cut(s)	266
BsnI	GGCC	1 cut(s)	700
Bso31I	GGTCTC	1 cut(s)	266
Bsp120I	GGGCCC	1 cut(s)	698
Bsp1286I	GDGCHC	2 cut(s)	220, 702
Bsp13I	TCCGGA	2 cut(s)	24, 778
Bsp143I	GATC	4 cut(s)	36, 600, 642, 960
BspANI	GGCC	1 cut(s)	700
BspCNI	CTCAG	1 cut(s)	566
BspEI	TCCGGA	2 cut(s)	24, 778
BspLI	GGNNCC	6 cut(s)	271, 436, 487, 581, 700, 829
BspOI	GCTAGC	1 cut(s)	57
BspQI	GCTCTTC	1 cut(s)	117
BspT107I	GGYRCC	2 cut(s)	269, 827
BspTNI	GGTCTC	1 cut(s)	266
BsrDI	GCAATG	1 cut(s)	875
BsrI	ACTGG	3 cut(s)	103, 173, 200
BssMI	GATC	4 cut(s)	36, 600, 642, 960
Bst4CI	ACNGT	1 cut(s)	341
Bst6I	CTCTTC	1 cut(s)	117
BstC8I	GCNNGC	4 cut(s)	55, 220, 364, 368
BstDEI	CTNAG	2 cut(s)	536, 553
BstF5I	GGATG	1 cut(s)	702
BstKTI	GATC	4 cut(s)	39, 603, 645, 963
BstMAI	GTCTC	1 cut(s)	266
BstMBI	GATC	4 cut(s)	36, 600, 642, 960
BstMWI	GCNNNNNNNGC	2 cut(s)	116, 125
BstNSI	RCATGY	1 cut(s)	727
BstSLI	GKGCMC	2 cut(s)	220, 702
BstV1I	GCAGC	2 cut(s)	44, 83
BstV2I	GAAGAC	1 cut(s)	151
BstX2I	RGATCY	1 cut(s)	600
BstXI	CCANNNNNNTGG	1 cut(s)	574
BstYI	RGATCY	1 cut(s)	600
BsuRI	GGCC	1 cut(s)	700
BtsCI	GGATG	1 cut(s)	702
Cac8I	GCNNGC	4 cut(s)	55, 220, 364, 368
Cfr13I	GGNCC	3 cut(s)	698, 699, 845
CseI	GACGC	1 cut(s)	359
CviAII	CATG	3 cut(s)	409, 426, 724
DdeI	CTNAG	2 cut(s)	536, 553
DpnI	GATC	4 cut(s)	38, 602, 644, 962
DpnII	GATC	4 cut(s)	36, 600, 642, 960
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
Eco24I	GRGCYC	1 cut(s)	702
Eco31I	GGTCTC	1 cut(s)	266
Eco47I	GGWCC	1 cut(s)	845
EcoO109I	RGGNCCY	1 cut(s)	698
EcoRI	GAATTC	2 cut(s)	685, 774
EcoT38I	GRGCYC	1 cut(s)	702
FaeI	CATG	3 cut(s)	412, 429, 727
FatI	CATG	3 cut(s)	408, 425, 723
Fnu4HI	GCNGC	2 cut(s)	58, 72
FokI	GGATG	1 cut(s)	689
FriOI	GRGCYC	1 cut(s)	702
Fsp4HI	GCNGC	2 cut(s)	58, 72
FspBI	CTAG	2 cut(s)	54, 287
GluI	GCNGC	2 cut(s)	58, 72
GsuI	CTGGAG	1 cut(s)	264
HaeIII	GGCC	1 cut(s)	700
HapII	CCGG	2 cut(s)	25, 779
HgaI	GACGC	1 cut(s)	359
Hin1II	CATG	3 cut(s)	412, 429, 727
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HinfI	GANTC	4 cut(s)	204, 231, 414, 655
HpaII	CCGG	2 cut(s)	25, 779
HphI	GGTGA	3 cut(s)	85, 127, 154
Hpy166II	GTNNAC	3 cut(s)	174, 218, 848
Hpy188I	TCNGA	1 cut(s)	938
Hpy188III	TCNNGA	8 cut(s)	25, 281, 314, 353, 567, 662, 779, 927
Hpy8I	GTNNAC	3 cut(s)	174, 218, 848
Hpy99I	CGWCG	1 cut(s)	375
HpyAV	CCTTC	3 cut(s)	589, 864, 949
HpyCH4III	ACNGT	1 cut(s)	341
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	4 cut(s)	218, 523, 679, 873
HpyF10VI	GCNNNNNNNGC	2 cut(s)	116, 125
HpyF3I	CTNAG	2 cut(s)	536, 553
HpySE526I	ACGT	1 cut(s)	246
Hsp92II	CATG	3 cut(s)	412, 429, 727
Kpn2I	TCCGGA	2 cut(s)	24, 778
Kzo9I	GATC	4 cut(s)	36, 600, 642, 960
LguI	GCTCTTC	1 cut(s)	117
LmnI	GCTCC	1 cut(s)	440
Lsp1109I	GCAGC	2 cut(s)	44, 83
MaeI	CTAG	2 cut(s)	54, 287
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	5 cut(s)	10, 61, 191, 205, 742
MalI	GATC	4 cut(s)	38, 602, 644, 962
MboI	GATC	4 cut(s)	36, 600, 642, 960
MboII	GAAGA	7 cut(s)	13, 104, 151, 496, 638, 709, 875
MflI	RGATCY	1 cut(s)	600
MhlI	GDGCHC	2 cut(s)	220, 702
MlyI	GAGTC	2 cut(s)	213, 423
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	4 cut(s)	40, 156, 288, 360
MroI	TCCGGA	2 cut(s)	24, 778
MroXI	GAANNNNTTC	1 cut(s)	630
MseI	TTAA	4 cut(s)	87, 531, 692, 840
MslI	CAYNNNNRTG	1 cut(s)	707
MspI	CCGG	2 cut(s)	25, 779
MwoI	GCNNNNNNNGC	2 cut(s)	116, 125
NdeII	GATC	4 cut(s)	36, 600, 642, 960
NheI	GCTAGC	1 cut(s)	53
NlaIII	CATG	3 cut(s)	412, 429, 727
NlaIV	GGNNCC	6 cut(s)	271, 436, 487, 581, 700, 829
NmuCI	GTSAC	1 cut(s)	205
NspI	RCATGY	1 cut(s)	727
PciI	ACATGT	1 cut(s)	723
PciSI	GCTCTTC	1 cut(s)	117
PcsI	WCGNNNNNNNCGW	1 cut(s)	226
PdmI	GAANNNNTTC	1 cut(s)	630
PfeI	GAWTC	2 cut(s)	231, 655
PkrI	GCNGC	2 cut(s)	59, 73
PleI	GAGTC	2 cut(s)	212, 422
PpsI	GAGTC	2 cut(s)	212, 422
PscI	ACATGT	1 cut(s)	723
PshBI	ATTAAT	1 cut(s)	531
PsiI	TTATAA	2 cut(s)	386, 543
PspN4I	GGNNCC	6 cut(s)	271, 436, 487, 581, 700, 829
PspOMI	GGGCCC	1 cut(s)	698
PspPI	GGNCC	3 cut(s)	698, 699, 845
PsrI	GAACNNNNNNTAC	2 cut(s)	236, 268
PsuI	RGATCY	1 cut(s)	600
RseI	CAYNNNNRTG	1 cut(s)	707
SapI	GCTCTTC	1 cut(s)	117
SaqAI	TTAA	4 cut(s)	87, 531, 692, 840
SatI	GCNGC	2 cut(s)	58, 72
Sau3AI	GATC	4 cut(s)	36, 600, 642, 960
Sau96I	GGNCC	3 cut(s)	698, 699, 845
SchI	GAGTC	2 cut(s)	213, 423
SduI	GDGCHC	2 cut(s)	220, 702
SinI	GGWCC	1 cut(s)	845
SmiMI	CAYNNNNRTG	1 cut(s)	707
SmlI	CTYRAG	1 cut(s)	351
SmoI	CTYRAG	1 cut(s)	351
SspI	AATATT	2 cut(s)	787, 808
SspMI	CTAG	2 cut(s)	54, 287
TaaI	ACNGT	1 cut(s)	341
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	4 cut(s)	229, 459, 886, 963
TfiI	GAWTC	2 cut(s)	231, 655
Tru1I	TTAA	4 cut(s)	87, 531, 692, 840
Tru9I	TTAA	4 cut(s)	87, 531, 692, 840
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	2 cut(s)	57, 71
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	1 cut(s)	397
VneI	GTGCAC	1 cut(s)	216
VpaK11BI	GGWCC	1 cut(s)	845
VspI	ATTAAT	1 cut(s)	531
XapI	RAATTY	4 cut(s)	630, 685, 774, 820
XceI	RCATGY	1 cut(s)	727
XmnI	GAANNNNTTC	1 cut(s)	630
XspI	CTAG	2 cut(s)	54, 287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.