MD00G1192800.v1.1

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Forward (+)
46691451 .. 46692047
597 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1192800.v1.1.491

Sequence Viewer

Length: 597 bp
ATGTTGTCGATGATACACTGCTTGTGTTATATCCATATGATGATTATGGCTAATTGCTTAACTGCAGGTGTATTAGCAATATCTCATACCAATATCAGCACAGATCAGTCTGCGCTTCTTTCTCTCAAAGCTCACATCACTAGTGACCCTCAAAACATCTTGACCACCAACTGGTCCTCTGCCTCCAATTCCAACATTTGCAACTGGGTTGGCGTTAGCTGCGGTGCTGGCCACCACAGAGTCACGGCCTTAAATCTTTCGCACATGGGTCTTGCCGGAGTTATTCCTCCACATCTAGGCAACCTCTCATTTCTCGTTGAGTTGGGCCTTGAGAATAATAGCTTTCATGGTCCCCTACCGCAAGAACTGTCTCGTTTGCGCCGGTTGAAGGTGATTAACCTTGGAAACAATGGCTTTATGGGAACCATTCCTTCGTGGTTTGGGTCCTTTGCTAAACTTCAAACCATCAAATTGTACGGTAATGGCTTCTCGGGTTTCATACCGGCTGCTATCTTCAACTTATCTGCACTCGAAACAATTAATCTAGGCAGGAACCAACTATCGGGTACGTACATACCACCAGTACCAACCACCTAG

Protein Analysis

199

Amino Acids

21.28

Weight (kDa)

8.71

Isoelectric Point (pI)

31.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 33 - 74 1.2e-09 Leucine rich repeat N-terminal domain
LRR_8 PF13855 127 - 187 1.3e-08 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 56
Acc36I ACCTGC 1 cut(s) 56
AccB7I CCANNNNNTGG 1 cut(s) 171
AciI CCGC 2 cut(s) 222, 359
AcoI YGGCCR 1 cut(s) 229
AfaI GTAC 4 cut(s) 476, 568, 572, 585
AfiI CCNNNNNNNGG 4 cut(s) 171, 296, 388, 562
AgsI TTSAA 3 cut(s) 388, 461, 517
AhlI ACTAGT 1 cut(s) 140
AluBI AGCT 3 cut(s) 131, 219, 342
AluI AGCT 3 cut(s) 131, 219, 342
Alw26I GTCTC 1 cut(s) 375
Ama87I CYCGRG 1 cut(s) 490
AoxI GGCC 3 cut(s) 229, 246, 325
ApeKI GCWGC 2 cut(s) 219, 506
AseI ATTAAT 1 cut(s) 540
AspLEI GCGC 2 cut(s) 115, 381
AspS9I GGNCC 4 cut(s) 174, 325, 350, 444
AsuHPI GGTGA 1 cut(s) 403
AvaI CYCGRG 1 cut(s) 490
AvaII GGWCC 3 cut(s) 174, 350, 444
BalI TGGCCA 1 cut(s) 231
BbvI GCAGC 2 cut(s) 206, 493
BccI CCATC 1 cut(s) 473
BceAI ACGGC 1 cut(s) 261
BcoDI GTCTC 1 cut(s) 375
BcuI ACTAGT 1 cut(s) 140
BfaI CTAG 4 cut(s) 141, 296, 545, 595
BfmI CTRYAG 1 cut(s) 63
BfuAI ACCTGC 1 cut(s) 56
BisI GCNGC 2 cut(s) 220, 507
BlsI GCNGC 2 cut(s) 221, 508
Bme18I GGWCC 3 cut(s) 174, 350, 444
BmeT110I CYCGRG 1 cut(s) 490
BmgT120I GGNCC 4 cut(s) 174, 325, 350, 444
BmiI GGNNCC 4 cut(s) 352, 424, 445, 554
BmrI ACTGGG 1 cut(s) 214
BmuI ACTGGG 1 cut(s) 214
BpuEI CTTGAG 1 cut(s) 350
BsaAI YACGTR 1 cut(s) 570
BsaJI CCNNGG 1 cut(s) 400
Bsc4I CCNNNNNNNGG 4 cut(s) 171, 296, 388, 562
Bse118I RCCGGY 2 cut(s) 381, 502
Bse1I ACTGG 3 cut(s) 176, 209, 581
BseDI CCNNGG 1 cut(s) 400
BseLI CCNNNNNNNGG 4 cut(s) 171, 296, 388, 562
BseNI ACTGG 3 cut(s) 176, 209, 581
BseXI GCAGC 2 cut(s) 206, 493
BsgI GTGCAG 1 cut(s) 510
BshFI GGCC 3 cut(s) 231, 248, 327
BsiHKCI CYCGRG 1 cut(s) 490
BsiSI CCGG 3 cut(s) 276, 382, 503
BslFI GGGAC 1 cut(s) 336
BslI CCNNNNNNNGG 4 cut(s) 171, 296, 388, 562
BsmAI GTCTC 1 cut(s) 375
BsmFI GGGAC 1 cut(s) 336
BsnI GGCC 3 cut(s) 231, 248, 327
BsoBI CYCGRG 1 cut(s) 490
Bsp143I GATC 1 cut(s) 103
BspACI CCGC 2 cut(s) 222, 359
BspANI GGCC 3 cut(s) 231, 248, 327
BspLI GGNNCC 4 cut(s) 352, 424, 445, 554
BspMAI CTGCAG 1 cut(s) 67
BspMI ACCTGC 1 cut(s) 56
BsrFI RCCGGY 2 cut(s) 381, 502
BsrI ACTGG 3 cut(s) 176, 209, 581
BssAI RCCGGY 2 cut(s) 381, 502
BssECI CCNNGG 1 cut(s) 400
BssMI GATC 1 cut(s) 103
BssT1I CCWWGG 1 cut(s) 400
Bst4CI ACNGT 2 cut(s) 369, 479
BstBAI YACGTR 1 cut(s) 570
BstC8I GCNNGC 1 cut(s) 229
BstHHI GCGC 2 cut(s) 115, 381
BstKTI GATC 1 cut(s) 106
BstMAI GTCTC 1 cut(s) 375
BstMBI GATC 1 cut(s) 103
BstMWI GCNNNNNNNGC 2 cut(s) 219, 228
BstSFI CTRYAG 1 cut(s) 63
BstSNI TACGTA 1 cut(s) 570
BstV1I GCAGC 2 cut(s) 206, 493
BsuRI GGCC 3 cut(s) 231, 248, 327
BtsI GCAGTG 1 cut(s) 16
BtsIMutI CAGTG 1 cut(s) 16
BveI ACCTGC 1 cut(s) 56
Cac8I GCNNGC 1 cut(s) 229
CfoI GCGC 2 cut(s) 115, 381
Cfr10I RCCGGY 2 cut(s) 381, 502
Cfr13I GGNCC 4 cut(s) 174, 325, 350, 444
Csp6I GTAC 4 cut(s) 475, 567, 571, 584
CviAII CATG 2 cut(s) 265, 347
CviQI GTAC 4 cut(s) 475, 567, 571, 584
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
EaeI YGGCCR 1 cut(s) 229
Eco105I TACGTA 1 cut(s) 570
Eco130I CCWWGG 1 cut(s) 400
Eco47I GGWCC 3 cut(s) 174, 350, 444
Eco88I CYCGRG 1 cut(s) 490
EcoO109I RGGNCCY 1 cut(s) 444
EcoT14I CCWWGG 1 cut(s) 400
ErhI CCWWGG 1 cut(s) 400
FaeI CATG 2 cut(s) 268, 350
FaqI GGGAC 1 cut(s) 336
FatI CATG 2 cut(s) 264, 346
FauNDI CATATG 1 cut(s) 36
Fnu4HI GCNGC 2 cut(s) 220, 507
Fsp4HI GCNGC 2 cut(s) 220, 507
FspBI CTAG 4 cut(s) 141, 296, 545, 595
GlaI GCGC 2 cut(s) 114, 380
GluI GCNGC 2 cut(s) 220, 507
HaeIII GGCC 3 cut(s) 231, 248, 327
HapII CCGG 3 cut(s) 276, 382, 503
HhaI GCGC 2 cut(s) 115, 381
Hin1II CATG 2 cut(s) 268, 350
Hin6I GCGC 2 cut(s) 113, 379
HinP1I GCGC 2 cut(s) 113, 379
HinfI GANTC 1 cut(s) 240
HpaII CCGG 3 cut(s) 276, 382, 503
HphI GGTGA 1 cut(s) 403
Hpy188III TCNNGA 1 cut(s) 160
HpyAV CCTTC 2 cut(s) 382, 441
HpyCH4III ACNGT 2 cut(s) 369, 479
HpyCH4IV ACGT 1 cut(s) 569
HpyCH4V TGCA 3 cut(s) 65, 201, 527
HpyF10VI GCNNNNNNNGC 2 cut(s) 219, 228
HpySE526I ACGT 1 cut(s) 569
Hsp92II CATG 2 cut(s) 268, 350
HspAI GCGC 2 cut(s) 113, 379
Kzo9I GATC 1 cut(s) 103
LpnPI CCDG 8 cut(s) 51, 157, 190, 213, 289, 395, 516, 535
Lsp1109I GCAGC 2 cut(s) 206, 493
MaeI CTAG 4 cut(s) 141, 296, 545, 595
MaeII ACGT 1 cut(s) 569
MaeIII GTNAC 2 cut(s) 143, 241
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MboII GAAGA 1 cut(s) 505
MlsI TGGCCA 1 cut(s) 231
MluCI AATT 4 cut(s) 52, 187, 470, 537
MluNI TGGCCA 1 cut(s) 231
MlyI GAGTC 1 cut(s) 249
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 5 cut(s) 159, 187, 193, 297, 314
Mox20I TGGCCA 1 cut(s) 231
MscI TGGCCA 1 cut(s) 231
MseI TTAA 4 cut(s) 59, 251, 396, 540
Msp20I TGGCCA 1 cut(s) 231
MspI CCGG 3 cut(s) 276, 382, 503
MwoI GCNNNNNNNGC 2 cut(s) 219, 228
NdeI CATATG 1 cut(s) 36
NdeII GATC 1 cut(s) 103
NlaIII CATG 2 cut(s) 268, 350
NlaIV GGNNCC 4 cut(s) 352, 424, 445, 554
NmuCI GTSAC 2 cut(s) 143, 241
PaqCI CACCTGC 1 cut(s) 56
PflMI CCANNNNNTGG 1 cut(s) 171
PkrI GCNGC 2 cut(s) 221, 508
PleI GAGTC 1 cut(s) 248
PpsI GAGTC 1 cut(s) 248
Ppu21I YACGTR 1 cut(s) 570
PpuMI RGGWCCY 1 cut(s) 444
PshBI ATTAAT 1 cut(s) 540
Psp5II RGGWCCY 1 cut(s) 444
PspN4I GGNNCC 4 cut(s) 352, 424, 445, 554
PspPI GGNCC 4 cut(s) 174, 325, 350, 444
PspPPI RGGWCCY 1 cut(s) 444
PstI CTGCAG 1 cut(s) 67
RsaI GTAC 4 cut(s) 476, 568, 572, 585
RsaNI GTAC 4 cut(s) 475, 567, 571, 584
SaqAI TTAA 4 cut(s) 59, 251, 396, 540
SatI GCNGC 2 cut(s) 220, 507
Sau3AI GATC 1 cut(s) 103
Sau96I GGNCC 4 cut(s) 174, 325, 350, 444
SchI GAGTC 1 cut(s) 249
SetI ASST 9 cut(s) 70, 133, 221, 306, 344, 393, 402, 572, 596
SfcI CTRYAG 1 cut(s) 63
SinI GGWCC 3 cut(s) 174, 350, 444
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
SnaBI TACGTA 1 cut(s) 570
SpeI ACTAGT 1 cut(s) 140
Sse9I AATT 4 cut(s) 52, 187, 470, 537
SsiI CCGC 2 cut(s) 222, 359
SspMI CTAG 4 cut(s) 141, 296, 545, 595
StyI CCWWGG 1 cut(s) 400
TaaI ACNGT 2 cut(s) 369, 479
TaiI ACGT 1 cut(s) 572
TaqI TCGA 2 cut(s) 8, 531
TasI AATT 4 cut(s) 52, 187, 470, 537
Tru1I TTAA 4 cut(s) 59, 251, 396, 540
Tru9I TTAA 4 cut(s) 59, 251, 396, 540
TscAI CASTG 1 cut(s) 23
TseFI GTSAC 2 cut(s) 143, 241
TseI GCWGC 2 cut(s) 219, 506
Tsp45I GTSAC 2 cut(s) 143, 241
TspDTI ATGAA 2 cut(s) 335, 487
TspRI CASTG 1 cut(s) 23
Van91I CCANNNNNTGG 1 cut(s) 171
VpaK11BI GGWCC 3 cut(s) 174, 350, 444
VspI ATTAAT 1 cut(s) 540
XspI CTAG 4 cut(s) 141, 296, 545, 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.