pycom05g27570

Leucine rich repeat

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
28530773 .. 28531478
706 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g27570.2

Sequence Viewer

Length: 483 bp
ATGTTTGAAGAAATTCCAAACTTGATTGGCAGTAAAGATCAGGTGGAGAAGTTGTACGTGCAGGCTAATGCCCTAAAAGGACCTGTTCCTTTGGCTGTCTTCAACATGTCTTCTTTGAAAATTTTGGCTCTAACGGCAAACTACTTGACTGGTAGTATTCCGGACGATTTATGTCAGCATCTTCCAAGTATCCAGATCTTGAGTTTGGCCCGCAACAAACTTGATGGTCCACTTCCATACAAATTATGGCAATTCAAAGAGCTTCTCCAGTTATCTTTAGACTCTAACAACTTCGGTGGAAGCATACCAGAAAGCATCGGGAACTCTACCCAGTTAGAAGGGATTGGCATTAGCTACAACAACTTGACAGGCCTCTCTCACCTTGCTGTTGTGTTGTTAAAAAGGGGGAAAATTGCTTTTCTTAAACTGGGGATACGATTAAAGAGAATTCTTTTGAAATTTAAATCATCATGTTCAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling

Protein Analysis

161

Amino Acids

17.55

Weight (kDa)

9.42

Isoelectric Point (pI)

27.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 160
AciI CCGC 1 cut(s) 211
AcsI RAATTY 4 cut(s) 12, 120, 447, 458
AfaI GTAC 1 cut(s) 56
AflIII ACRYGT 1 cut(s) 105
AgsI TTSAA 6 cut(s) 8, 103, 118, 256, 457, 477
AluBI AGCT 2 cut(s) 262, 354
AluI AGCT 2 cut(s) 262, 354
Aor13HI TCCGGA 1 cut(s) 160
AoxI GGCC 2 cut(s) 207, 370
ApoI RAATTY 4 cut(s) 12, 120, 447, 458
Asp700I GAANNNNTTC 1 cut(s) 12
AspS9I GGNCC 3 cut(s) 80, 208, 227
AsuHPI GGTGA 1 cut(s) 371
AvaII GGWCC 2 cut(s) 80, 227
BbsI GAAGAC 2 cut(s) 91, 102
BccI CCATC 1 cut(s) 218
BceAI ACGGC 1 cut(s) 150
BciVI GTATCC 2 cut(s) 200, 426
BfuI GTATCC 2 cut(s) 200, 426
BglII AGATCT 1 cut(s) 195
Bme18I GGWCC 2 cut(s) 80, 227
BmgT120I GGNCC 3 cut(s) 80, 208, 227
BmrI ACTGGG 2 cut(s) 325, 437
BmsI GCATC 2 cut(s) 187, 324
BmuI ACTGGG 2 cut(s) 325, 437
BpiI GAAGAC 2 cut(s) 91, 102
BpmI CTGGAG 1 cut(s) 251
BpuEI CTTGAG 1 cut(s) 220
BsaAI YACGTR 1 cut(s) 58
BsaWI WCCGGW 1 cut(s) 160
BsaXI ACNNNNNCTCC 2 cut(s) 38, 68
Bse1I ACTGG 4 cut(s) 154, 268, 331, 432
BseAI TCCGGA 1 cut(s) 160
BseNI ACTGG 4 cut(s) 154, 268, 331, 432
BsgI GTGCAG 1 cut(s) 80
BshFI GGCC 2 cut(s) 209, 372
BsiSI CCGG 1 cut(s) 161
BsnI GGCC 2 cut(s) 209, 372
Bsp13I TCCGGA 1 cut(s) 160
Bsp143I GATC 2 cut(s) 37, 195
BspACI CCGC 1 cut(s) 211
BspANI GGCC 2 cut(s) 209, 372
BspEI TCCGGA 1 cut(s) 160
BsrI ACTGG 4 cut(s) 154, 268, 331, 432
BssMI GATC 2 cut(s) 37, 195
BstBAI YACGTR 1 cut(s) 58
BstC8I GCNNGC 2 cut(s) 63, 211
BstKTI GATC 2 cut(s) 40, 198
BstMBI GATC 2 cut(s) 37, 195
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstNSI RCATGY 1 cut(s) 109
BstV2I GAAGAC 2 cut(s) 91, 102
BstX2I RGATCY 1 cut(s) 195
BstYI RGATCY 1 cut(s) 195
BsuI GTATCC 2 cut(s) 200, 426
BsuRI GGCC 2 cut(s) 209, 372
Cac8I GCNNGC 2 cut(s) 63, 211
Cfr13I GGNCC 3 cut(s) 80, 208, 227
Csp6I GTAC 1 cut(s) 55
CspCI CAANNNNNGTGG 2 cut(s) 277, 312
CviAII CATG 2 cut(s) 106, 471
CviJI RGCY 7 cut(s) 65, 95, 128, 209, 262, 354, 372
CviKI_1 RGCY 7 cut(s) 65, 95, 128, 209, 262, 354, 372
CviQI GTAC 1 cut(s) 55
DpnI GATC 2 cut(s) 39, 197
DpnII GATC 2 cut(s) 37, 195
DraI TTTAAA 1 cut(s) 463
Eco147I AGGCCT 1 cut(s) 372
Eco47I GGWCC 2 cut(s) 80, 227
EcoO109I RGGNCCY 1 cut(s) 80
EcoRI GAATTC 1 cut(s) 447
FaeI CATG 2 cut(s) 109, 474
FaiI YATR 7 cut(s) 107, 172, 238, 247, 305, 472, 481
FatI CATG 2 cut(s) 105, 470
FauI CCCGC 1 cut(s) 218
GsuI CTGGAG 1 cut(s) 251
HaeIII GGCC 2 cut(s) 209, 372
HapII CCGG 1 cut(s) 161
Hin1II CATG 2 cut(s) 109, 474
HinfI GANTC 1 cut(s) 281
HpaII CCGG 1 cut(s) 161
HphI GGTGA 1 cut(s) 371
Hpy166II GTNNAC 1 cut(s) 230
Hpy188III TCNNGA 4 cut(s) 161, 193, 199, 319
Hpy8I GTNNAC 1 cut(s) 230
HpyAV CCTTC 1 cut(s) 332
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 1 cut(s) 61
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpySE526I ACGT 1 cut(s) 57
Hsp92II CATG 2 cut(s) 109, 474
Kpn2I TCCGGA 1 cut(s) 160
Kzo9I GATC 2 cut(s) 37, 195
LweI GCATC 2 cut(s) 187, 324
MaeII ACGT 1 cut(s) 57
MalI GATC 2 cut(s) 39, 197
MboI GATC 2 cut(s) 37, 195
MboII GAAGA 4 cut(s) 20, 91, 102, 173
MflI RGATCY 1 cut(s) 195
MluCI AATT 7 cut(s) 12, 120, 242, 251, 411, 447, 458
MlyI GAGTC 1 cut(s) 275
MnlI CCTC 1 cut(s) 383
MroI TCCGGA 1 cut(s) 160
MroXI GAANNNNTTC 1 cut(s) 12
MseI TTAA 4 cut(s) 398, 423, 440, 462
MspI CCGG 1 cut(s) 161
MwoI GCNNNNNNNGC 1 cut(s) 134
NdeII GATC 2 cut(s) 37, 195
NlaIII CATG 2 cut(s) 109, 474
NspI RCATGY 1 cut(s) 109
PceI AGGCCT 1 cut(s) 372
PciI ACATGT 1 cut(s) 105
PdmI GAANNNNTTC 1 cut(s) 12
PleI GAGTC 1 cut(s) 275
PpsI GAGTC 1 cut(s) 275
Ppu21I YACGTR 1 cut(s) 58
PpuMI RGGWCCY 1 cut(s) 80
PscI ACATGT 1 cut(s) 105
Psp5II RGGWCCY 1 cut(s) 80
PspPI GGNCC 3 cut(s) 80, 208, 227
PspPPI RGGWCCY 1 cut(s) 80
PsuI RGATCY 1 cut(s) 195
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
SaqAI TTAA 4 cut(s) 398, 423, 440, 462
Sau3AI GATC 2 cut(s) 37, 195
Sau96I GGNCC 3 cut(s) 80, 208, 227
SchI GAGTC 1 cut(s) 275
SetI ASST 6 cut(s) 45, 60, 85, 264, 356, 384
SfaNI GCATC 2 cut(s) 187, 324
SinI GGWCC 2 cut(s) 80, 227
SmiI ATTTAAAT 1 cut(s) 463
SmlI CTYRAG 1 cut(s) 199
SmoI CTYRAG 1 cut(s) 199
Sse9I AATT 7 cut(s) 12, 120, 242, 251, 411, 447, 458
SseBI AGGCCT 1 cut(s) 372
SsiI CCGC 1 cut(s) 211
StuI AGGCCT 1 cut(s) 372
SwaI ATTTAAAT 1 cut(s) 463
TaiI ACGT 1 cut(s) 60
TasI AATT 7 cut(s) 12, 120, 242, 251, 411, 447, 458
Tru1I TTAA 4 cut(s) 398, 423, 440, 462
Tru9I TTAA 4 cut(s) 398, 423, 440, 462
VpaK11BI GGWCC 2 cut(s) 80, 227
XapI RAATTY 4 cut(s) 12, 120, 447, 458
XceI RCATGY 1 cut(s) 109
XcmI CCANNNNNNNNNTGG 1 cut(s) 243
XmnI GAANNNNTTC 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.