Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000303.1

Orthogroup ID

OG0000229

Physical Location & Seq

Genomic Coordinates Forward (+)

36956 .. 39647

Gene Structure 2692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000303.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

atggcagcacaaaccaaccttaacatcaccacagaccggtctgcacttcttgctctaaaagtccatatcacaagtgaccctcaaaacatgatctttgccaattggtcaaccaccacccctgtttgcaactgggttggcatcatttgtggtgcacgccatcatcgagtcacagagttgaacatctcttactttggtctcgcgggcaccattcctcctgagttaggcaacttatcattgcttgttaatctgaacatccaaaataacaatttccagggtaccttacctgacgaattggctcgcttgcgccggttgaagtttattaacttaggatacaacaagtttatgggagtgataccttcatggtttgggtccttgtccaaacttcaaggattcaggttatttggtactataccatatgaatttggttatcttccaaatttagaggggttgtcgctcatggataataatctaaatggtcatataccatcctcaatcttcaatatctccacaataacagaattatatctcggcatcaatcagctttcaggtagcctcccagcaaacataggccttgggcttccaaacgtagaacaatttcaagtagcagcgaatcacctcagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04016 ko04064 ko04620 ko04621 ko04624 ko04626 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04016 map04064 map04620 map04621 map04624 map04626 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

207

Amino Acids

22.77

Weight (kDa)

6.96

Isoelectric Point (pI)

36.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000229)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica	MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica	Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis	pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis	RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata	RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora	Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii	Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa	Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha	Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana	Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	275
AccB1I	GGYRCC	2 cut(s)	203, 275
AccII	CGCG	1 cut(s)	200
AciI	CCGC	1 cut(s)	200
AcsI	RAATTY	2 cut(s)	419, 436
AfaI	GTAC	2 cut(s)	277, 406
AfiI	CCNNNNNNNGG	2 cut(s)	36, 221
AgeI	ACCGGT	1 cut(s)	36
AgsI	TTSAA	5 cut(s)	178, 313, 386, 499, 599
AjnI	CCWGG	1 cut(s)	270
AluBI	AGCT	1 cut(s)	541
AluI	AGCT	1 cut(s)	541
Alw21I	GWGCWC	1 cut(s)	154
Alw26I	GTCTC	1 cut(s)	200
Alw44I	GTGCAC	1 cut(s)	150
AoxI	GGCC	1 cut(s)	568
ApaLI	GTGCAC	1 cut(s)	150
ApeKI	GCWGC	2 cut(s)	5, 605
ApoI	RAATTY	2 cut(s)	419, 436
AsiGI	ACCGGT	1 cut(s)	36
Asp700I	GAANNNNTTC	1 cut(s)	594
Asp718I	GGTACC	1 cut(s)	275
AspLEI	GCGC	1 cut(s)	306
AspS9I	GGNCC	1 cut(s)	369
AsuHPI	GGTGA	2 cut(s)	19, 605
AvaII	GGWCC	1 cut(s)	369
BaeGI	GKGCMC	2 cut(s)	154, 206
BanI	GGYRCC	2 cut(s)	203, 275
Bbv12I	GWGCWC	1 cut(s)	154
BbvI	GCAGC	2 cut(s)	17, 617
BccI	CCATC	2 cut(s)	165, 493
BciT130I	CCWGG	1 cut(s)	272
BciVI	GTATCC	1 cut(s)	323
BcoDI	GTCTC	1 cut(s)	200
BfuI	GTATCC	1 cut(s)	323
BisI	GCNGC	2 cut(s)	6, 606
BlsI	GCNGC	2 cut(s)	7, 607
Bme1390I	CCNGG	1 cut(s)	272
Bme18I	GGWCC	1 cut(s)	369
BmgT120I	GGNCC	1 cut(s)	369
BmiI	GGNNCC	3 cut(s)	205, 277, 370
BmrFI	CCNGG	1 cut(s)	272
BmrI	ACTGGG	1 cut(s)	139
BmsI	GCATC	2 cut(s)	147, 540
BmuI	ACTGGG	1 cut(s)	139
BsaBI	GATNNNNATC	1 cut(s)	465
BsaI	GGTCTC	1 cut(s)	200
BsaJI	CCNNGG	2 cut(s)	271, 571
BsaWI	WCCGGW	1 cut(s)	36
BsaXI	ACNNNNNCTCC	2 cut(s)	196, 226
Bsc4I	CCNNNNNNNGG	2 cut(s)	36, 221
Bse118I	RCCGGY	2 cut(s)	36, 306
Bse1I	ACTGG	1 cut(s)	134
Bse3DI	GCAATG	1 cut(s)	233
Bse8I	GATNNNNATC	1 cut(s)	465
BseBI	CCWGG	1 cut(s)	272
BseDI	CCNNGG	2 cut(s)	271, 571
BseGI	GGATG	2 cut(s)	252, 485
BseJI	GATNNNNATC	1 cut(s)	465
BseLI	CCNNNNNNNGG	2 cut(s)	36, 221
BseMI	GCAATG	1 cut(s)	233
BseMII	CTCAG	1 cut(s)	207
BseNI	ACTGG	1 cut(s)	134
BseSI	GKGCMC	2 cut(s)	154, 206
BseXI	GCAGC	2 cut(s)	17, 617
BseYI	CCCAGC	1 cut(s)	556
BsgI	GTGCAG	1 cut(s)	27
Bsh1236I	CGCG	1 cut(s)	200
BshFI	GGCC	1 cut(s)	570
BshNI	GGYRCC	2 cut(s)	203, 275
BshTI	ACCGGT	1 cut(s)	36
BsiHKAI	GWGCWC	1 cut(s)	154
BsiSI	CCGG	2 cut(s)	37, 307
BslI	CCNNNNNNNGG	2 cut(s)	36, 221
BsmAI	GTCTC	1 cut(s)	200
BsnI	GGCC	1 cut(s)	570
Bso31I	GGTCTC	1 cut(s)	200
Bsp1286I	GDGCHC	2 cut(s)	154, 206
Bsp143I	GATC	1 cut(s)	90
BspACI	CCGC	1 cut(s)	200
BspANI	GGCC	1 cut(s)	570
BspCNI	CTCAG	1 cut(s)	208
BspFNI	CGCG	1 cut(s)	200
BspLI	GGNNCC	3 cut(s)	205, 277, 370
BspT107I	GGYRCC	2 cut(s)	203, 275
BspTNI	GGTCTC	1 cut(s)	200
BsrDI	GCAATG	1 cut(s)	233
BsrFI	RCCGGY	2 cut(s)	36, 306
BsrI	ACTGG	1 cut(s)	134
BssAI	RCCGGY	2 cut(s)	36, 306
BssECI	CCNNGG	2 cut(s)	271, 571
BssMI	GATC	1 cut(s)	90
BssT1I	CCWWGG	1 cut(s)	571
Bst2UI	CCWGG	1 cut(s)	272
BstAPI	GCANNNNNTGC	1 cut(s)	50
BstC8I	GCNNGC	4 cut(s)	154, 202, 298, 302
BstDEI	CTNAG	3 cut(s)	216, 325, 617
BstENI	CCTNNNNNAGG	1 cut(s)	219
BstF5I	GGATG	2 cut(s)	252, 485
BstFNI	CGCG	1 cut(s)	200
BstHHI	GCGC	1 cut(s)	306
BstKTI	GATC	1 cut(s)	93
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	1 cut(s)	90
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstNI	CCWGG	1 cut(s)	272
BstSCI	CCNGG	1 cut(s)	270
BstSLI	GKGCMC	2 cut(s)	154, 206
BstUI	CGCG	1 cut(s)	200
BstV1I	GCAGC	2 cut(s)	17, 617
BsuI	GTATCC	1 cut(s)	323
BsuRI	GGCC	1 cut(s)	570
BtsCI	GGATG	2 cut(s)	252, 485
Cac8I	GCNNGC	4 cut(s)	154, 202, 298, 302
CfoI	GCGC	1 cut(s)	306
Cfr10I	RCCGGY	2 cut(s)	36, 306
Cfr13I	GGNCC	1 cut(s)	369
Csp6I	GTAC	2 cut(s)	276, 405
CspAI	ACCGGT	1 cut(s)	36
CviAII	CATG	3 cut(s)	88, 360, 457
CviJI	RGCY	5 cut(s)	296, 541, 552, 570, 577
CviKI_1	RGCY	5 cut(s)	296, 541, 552, 570, 577
CviQI	GTAC	2 cut(s)	276, 405
DdeI	CTNAG	3 cut(s)	216, 325, 617
DpnI	GATC	1 cut(s)	92
DpnII	GATC	1 cut(s)	90
Eco130I	CCWWGG	1 cut(s)	571
Eco147I	AGGCCT	1 cut(s)	570
Eco31I	GGTCTC	1 cut(s)	200
Eco47I	GGWCC	1 cut(s)	369
EcoNI	CCTNNNNNAGG	1 cut(s)	219
EcoO109I	RGGNCCY	1 cut(s)	369
EcoRII	CCWGG	1 cut(s)	270
EcoT14I	CCWWGG	1 cut(s)	571
ErhI	CCWWGG	1 cut(s)	571
FaeI	CATG	3 cut(s)	91, 363, 460
FatI	CATG	3 cut(s)	87, 359, 456
FauI	CCCGC	1 cut(s)	193
FauNDI	CATATG	1 cut(s)	415
Fnu4HI	GCNGC	2 cut(s)	6, 606
FokI	GGATG	2 cut(s)	239, 472
Fsp4HI	GCNGC	2 cut(s)	6, 606
GlaI	GCGC	1 cut(s)	305
GluI	GCNGC	2 cut(s)	6, 606
GsaI	CCCAGC	1 cut(s)	560
HaeIII	GGCC	1 cut(s)	570
HapII	CCGG	2 cut(s)	37, 307
HhaI	GCGC	1 cut(s)	306
Hin1II	CATG	3 cut(s)	91, 363, 460
Hin6I	GCGC	1 cut(s)	304
HinP1I	GCGC	1 cut(s)	304
HincII	GTYRAC	1 cut(s)	108
HindII	GTYRAC	1 cut(s)	108
HinfI	GANTC	3 cut(s)	165, 390, 610
HpaII	CCGG	2 cut(s)	37, 307
HphI	GGTGA	2 cut(s)	19, 605
Hpy166II	GTNNAC	2 cut(s)	108, 152
Hpy188I	TCNGA	1 cut(s)	249
Hpy188III	TCNNGA	1 cut(s)	215
Hpy8I	GTNNAC	2 cut(s)	108, 152
HpyAV	CCTTC	1 cut(s)	366
HpyCH4IV	ACGT	1 cut(s)	585
HpyCH4V	TGCA	3 cut(s)	44, 126, 152
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpyF3I	CTNAG	3 cut(s)	216, 325, 617
HpySE526I	ACGT	1 cut(s)	585
Hsp92II	CATG	3 cut(s)	91, 363, 460
HspAI	GCGC	1 cut(s)	304
KpnI	GGTACC	1 cut(s)	279
Kzo9I	GATC	1 cut(s)	90
Lsp1109I	GCAGC	2 cut(s)	17, 617
LweI	GCATC	2 cut(s)	147, 540
MaeII	ACGT	1 cut(s)	585
MaeIII	GTNAC	2 cut(s)	74, 166
MalI	GATC	1 cut(s)	92
MboI	GATC	1 cut(s)	90
MboII	GAAGA	2 cut(s)	422, 487
MfeI	CAATTG	1 cut(s)	100
MhlI	GDGCHC	2 cut(s)	154, 206
MluCI	AATT	7 cut(s)	100, 265, 290, 419, 436, 518, 593
MlyI	GAGTC	1 cut(s)	174
MnlI	CCTC	5 cut(s)	90, 222, 436, 499, 563
MroXI	GAANNNNTTC	1 cut(s)	594
MseI	TTAA	3 cut(s)	21, 243, 321
MspI	CCGG	2 cut(s)	37, 307
MspR9I	CCNGG	1 cut(s)	272
MunI	CAATTG	1 cut(s)	100
MvaI	CCWGG	1 cut(s)	272
MvnI	CGCG	1 cut(s)	200
MwoI	GCNNNNNNNGC	1 cut(s)	50
NdeI	CATATG	1 cut(s)	415
NdeII	GATC	1 cut(s)	90
NlaIII	CATG	3 cut(s)	91, 363, 460
NlaIV	GGNNCC	3 cut(s)	205, 277, 370
NmeAIII	GCCGAG	1 cut(s)	507
NmuCI	GTSAC	2 cut(s)	74, 166
PceI	AGGCCT	1 cut(s)	570
PcsI	WCGNNNNNNNCGW	1 cut(s)	160
PdmI	GAANNNNTTC	1 cut(s)	594
PfeI	GAWTC	2 cut(s)	390, 610
PinAI	ACCGGT	1 cut(s)	36
PkrI	GCNGC	2 cut(s)	7, 607
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
PpuMI	RGGWCCY	1 cut(s)	369
Psp5II	RGGWCCY	1 cut(s)	369
Psp6I	CCWGG	1 cut(s)	270
PspFI	CCCAGC	1 cut(s)	556
PspGI	CCWGG	1 cut(s)	270
PspN4I	GGNNCC	3 cut(s)	205, 277, 370
PspPI	GGNCC	1 cut(s)	369
PspPPI	RGGWCCY	1 cut(s)	369
PsrI	GAACNNNNNNTAC	2 cut(s)	170, 202
RsaI	GTAC	2 cut(s)	277, 406
RsaNI	GTAC	2 cut(s)	276, 405
SaqAI	TTAA	3 cut(s)	21, 243, 321
SatI	GCNGC	2 cut(s)	6, 606
Sau3AI	GATC	1 cut(s)	90
Sau96I	GGNCC	1 cut(s)	369
SchI	GAGTC	1 cut(s)	174
ScrFI	CCNGG	1 cut(s)	272
SduI	GDGCHC	2 cut(s)	154, 206
SetI	ASST	9 cut(s)	21, 281, 286, 358, 398, 543, 550, 588, 618
SfaNI	GCATC	2 cut(s)	147, 540
SinI	GGWCC	1 cut(s)	369
Sse9I	AATT	7 cut(s)	100, 265, 290, 419, 436, 518, 593
SseBI	AGGCCT	1 cut(s)	570
SsiI	CCGC	1 cut(s)	200
StuI	AGGCCT	1 cut(s)	570
StyD4I	CCNGG	1 cut(s)	270
StyI	CCWWGG	1 cut(s)	571
TaiI	ACGT	1 cut(s)	588
TaqI	TCGA	1 cut(s)	163
TasI	AATT	7 cut(s)	100, 265, 290, 419, 436, 518, 593
TfiI	GAWTC	2 cut(s)	390, 610
Tru1I	TTAA	3 cut(s)	21, 243, 321
Tru9I	TTAA	3 cut(s)	21, 243, 321
TseFI	GTSAC	2 cut(s)	74, 166
TseI	GCWGC	2 cut(s)	5, 605
Tsp45I	GTSAC	2 cut(s)	74, 166
TspDTI	ATGAA	2 cut(s)	348, 432
VneI	GTGCAC	1 cut(s)	150
VpaK11BI	GGWCC	1 cut(s)	369
XagI	CCTNNNNNAGG	1 cut(s)	219
XapI	RAATTY	2 cut(s)	419, 436
XmnI	GAANNNNTTC	1 cut(s)	594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.