FvH4_1g13790

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000229
Physical Location & Seq
Forward (+)
7596256 .. 7597045
790 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g13790.t1

Sequence Viewer

Length: 546 bp
ATGGGAGTCATTCCGTCATGGTTTGGTTCCTTATCCAATCTTCAAATCTTCTCCTTGTACGGTAATAAATTTTCAGGTTCTATACCAACGGCCATCTGCAACTTATCTGCACTCCAAATAGTCAGTTTGAGCTATAACCAGCTATCAGGTAGCATACCAAGAGAAATTGGGAATTTAACAACGTTGAAGGAGATCTACCTTGATTATAATAATTTCATAGGAATTCCAAATGAGATTGGCGCTTTAGATCAACTAGAGATGTTGTTCGTGCAAGAAAATGTTCTTAAAGGAAATGTTCCTATGGATGTCTTTAACATGTCGTCTTTGATTACTTTGACTCTATATGGAAACAACTTAAAGGGTAGGCTTCCAGATAATATATGTCAAAATCTTCCTCATATTCAAACGTTGTATTTCAGCAATAACCAGCTTGAAGGTCCACTTCCATCGATATTTTGGCAATGCAAAGAACTTGTTGACTTGGCGTTGAATCGTAACAACTTCAGTGGAAGCGTACGTACCCAAAAATATTGGAAACGCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

182

Amino Acids

20.37

Weight (kDa)

6.56

Isoelectric Point (pI)

23.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 5 - 48 1.5e-06 Leucine rich repeat
LRR_14 PF23598 55 - 125 3.7e-06 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 207
AclI AACGTT 2 cut(s) 182, 407
AcoI YGGCCR 1 cut(s) 90
AcsI RAATTY 3 cut(s) 68, 172, 222
AcuI CTGAAG 1 cut(s) 487
AfaI GTAC 3 cut(s) 59, 516, 520
AflIII ACRYGT 1 cut(s) 315
AgsI TTSAA 5 cut(s) 44, 187, 404, 434, 490
AluBI AGCT 3 cut(s) 132, 142, 430
AluI AGCT 3 cut(s) 132, 142, 430
AoxI GGCC 1 cut(s) 90
ApoI RAATTY 3 cut(s) 68, 172, 222
Asp700I GAANNNNTTC 1 cut(s) 279
AspLEI GCGC 1 cut(s) 242
AspS9I GGNCC 1 cut(s) 437
AvaII GGWCC 1 cut(s) 437
BarI GAAGNNNNNNTAC 4 cut(s) 179, 211, 502, 534
BccI CCATC 2 cut(s) 101, 454
BceAI ACGGC 1 cut(s) 105
BfaI CTAG 1 cut(s) 254
BfoI RGCGCY 1 cut(s) 243
BglII AGATCT 1 cut(s) 192
Bme18I GGWCC 1 cut(s) 437
BmgT120I GGNCC 1 cut(s) 437
BmiI GGNNCC 1 cut(s) 28
Bsa29I ATCGAT 1 cut(s) 449
BsaAI YACGTR 1 cut(s) 518
Bse3DI GCAATG 1 cut(s) 467
BseCI ATCGAT 1 cut(s) 449
BseGI GGATG 1 cut(s) 310
BseMI GCAATG 1 cut(s) 467
BsgI GTGCAG 1 cut(s) 93
BshFI GGCC 1 cut(s) 92
BshVI ATCGAT 1 cut(s) 449
BsiWI CGTACG 1 cut(s) 514
BsnI GGCC 1 cut(s) 92
Bsp143I GATC 2 cut(s) 192, 247
BspANI GGCC 1 cut(s) 92
BspDI ATCGAT 1 cut(s) 449
BspLI GGNNCC 1 cut(s) 28
BsrDI GCAATG 1 cut(s) 467
BssMI GATC 2 cut(s) 192, 247
Bst4CI ACNGT 1 cut(s) 62
BstBAI YACGTR 1 cut(s) 518
BstF5I GGATG 1 cut(s) 310
BstH2I RGCGCY 1 cut(s) 243
BstHHI GCGC 1 cut(s) 242
BstKTI GATC 2 cut(s) 195, 250
BstMBI GATC 2 cut(s) 192, 247
BstNSI RCATGY 1 cut(s) 319
BstSNI TACGTA 1 cut(s) 518
BstX2I RGATCY 1 cut(s) 192
BstYI RGATCY 1 cut(s) 192
Bsu15I ATCGAT 1 cut(s) 449
BsuRI GGCC 1 cut(s) 92
BsuTUI ATCGAT 1 cut(s) 449
BtsCI GGATG 1 cut(s) 310
BtsIMutI CAGTG 1 cut(s) 511
CfoI GCGC 1 cut(s) 242
Cfr13I GGNCC 1 cut(s) 437
ClaI ATCGAT 1 cut(s) 449
Csp6I GTAC 3 cut(s) 58, 515, 519
CspCI CAANNNNNGTGG 2 cut(s) 487, 522
CviAII CATG 2 cut(s) 18, 316
CviJI RGCY 5 cut(s) 92, 132, 142, 367, 430
CviKI_1 RGCY 5 cut(s) 92, 132, 142, 367, 430
CviQI GTAC 3 cut(s) 58, 515, 519
DpnI GATC 2 cut(s) 194, 249
DpnII GATC 2 cut(s) 192, 247
EaeI YGGCCR 1 cut(s) 90
Eco105I TACGTA 1 cut(s) 518
Eco47I GGWCC 1 cut(s) 437
Eco57I CTGAAG 1 cut(s) 487
EcoRI GAATTC 1 cut(s) 222
FaeI CATG 2 cut(s) 21, 319
FalI AAGNNNNNCTT 2 cut(s) 426, 458
FatI CATG 2 cut(s) 17, 315
FokI GGATG 1 cut(s) 317
FspBI CTAG 1 cut(s) 254
GlaI GCGC 1 cut(s) 241
HaeII RGCGCY 1 cut(s) 243
HaeIII GGCC 1 cut(s) 92
HhaI GCGC 1 cut(s) 242
Hin1II CATG 2 cut(s) 21, 319
Hin6I GCGC 1 cut(s) 240
HinP1I GCGC 1 cut(s) 240
HincII GTYRAC 1 cut(s) 478
HindII GTYRAC 1 cut(s) 478
HinfI GANTC 3 cut(s) 6, 337, 490
Hpy166II GTNNAC 2 cut(s) 440, 478
Hpy188III TCNNGA 1 cut(s) 371
Hpy8I GTNNAC 2 cut(s) 440, 478
HpyAV CCTTC 2 cut(s) 181, 428
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4IV ACGT 3 cut(s) 182, 407, 517
HpyCH4V TGCA 4 cut(s) 99, 110, 271, 465
HpySE526I ACGT 3 cut(s) 182, 407, 517
Hsp92II CATG 2 cut(s) 21, 319
HspAI GCGC 1 cut(s) 240
Kzo9I GATC 2 cut(s) 192, 247
LpnPI CCDG 5 cut(s) 60, 132, 152, 384, 440
MaeI CTAG 1 cut(s) 254
MaeII ACGT 3 cut(s) 182, 407, 517
MaeIII GTNAC 1 cut(s) 494
MalI GATC 2 cut(s) 194, 249
MboI GATC 2 cut(s) 192, 247
MboII GAAGA 3 cut(s) 32, 40, 383
MflI RGATCY 1 cut(s) 192
MluCI AATT 5 cut(s) 68, 165, 172, 211, 222
MlyI GAGTC 2 cut(s) 15, 331
MnlI CCTC 1 cut(s) 405
MroXI GAANNNNTTC 1 cut(s) 279
MseI TTAA 4 cut(s) 176, 285, 312, 356
NdeII GATC 2 cut(s) 192, 247
NlaIII CATG 2 cut(s) 21, 319
NlaIV GGNNCC 1 cut(s) 28
NspI RCATGY 1 cut(s) 319
PciI ACATGT 1 cut(s) 315
PdmI GAANNNNTTC 1 cut(s) 279
PfeI GAWTC 1 cut(s) 490
Pfl23II CGTACG 1 cut(s) 514
PleI GAGTC 2 cut(s) 14, 331
PpsI GAGTC 2 cut(s) 14, 331
Ppu21I YACGTR 1 cut(s) 518
PscI ACATGT 1 cut(s) 315
PsiI TTATAA 1 cut(s) 207
Psp1406I AACGTT 2 cut(s) 182, 407
PspLI CGTACG 1 cut(s) 514
PspN4I GGNNCC 1 cut(s) 28
PspPI GGNCC 1 cut(s) 437
PsuI RGATCY 1 cut(s) 192
RsaI GTAC 3 cut(s) 59, 516, 520
RsaNI GTAC 3 cut(s) 58, 515, 519
SaqAI TTAA 4 cut(s) 176, 285, 312, 356
Sau3AI GATC 2 cut(s) 192, 247
Sau96I GGNCC 1 cut(s) 437
SchI GAGTC 2 cut(s) 15, 331
SinI GGWCC 1 cut(s) 437
SnaBI TACGTA 1 cut(s) 518
Sse9I AATT 5 cut(s) 68, 165, 172, 211, 222
SspI AATATT 1 cut(s) 530
SspMI CTAG 1 cut(s) 254
TaaI ACNGT 1 cut(s) 62
TaiI ACGT 3 cut(s) 185, 410, 520
TaqI TCGA 1 cut(s) 449
TasI AATT 5 cut(s) 68, 165, 172, 211, 222
TfiI GAWTC 1 cut(s) 490
Tru1I TTAA 4 cut(s) 176, 285, 312, 356
Tru9I TTAA 4 cut(s) 176, 285, 312, 356
TscAI CASTG 1 cut(s) 511
TspDTI ATGAA 1 cut(s) 205
TspRI CASTG 1 cut(s) 511
VpaK11BI GGWCC 1 cut(s) 437
XapI RAATTY 3 cut(s) 68, 172, 222
XceI RCATGY 1 cut(s) 319
XcmI CCANNNNNNNNNTGG 1 cut(s) 453
XmnI GAANNNNTTC 1 cut(s) 279
XspI CTAG 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.