Rh5CG095300

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000229
Physical Location & Seq
Forward (+)
7527120 .. 7544934
17815 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG095300.1

Sequence Viewer

Length: 1005 bp
ATGGAGAGCACTTGGTTCTTCCTTGTCTACGCTTGTTGTATGGCGGCTAGCTGCTTAACTACAGCAGCACAAACCAACATTAGCACAGACCAGTCTGCTCTTCTTGCTCTCAAAGCCCATATCACCAGTGACCCTCATAACTTGATCTTCACCAACTGGTCAACCAATACTCCCGTTTGCAACTGGGTTGGCGTTACCTGTGGTGCGCGCCACCTTAGAGCCACAGCCTTGAACCTCTCCTACTTTGGTCTCCAAGGCAGTATTCCTCCACAGCTAGGCAACCTATCATTTCTTGTTGATATTGACTTGAGAAATAACAGTTTCCAAGGTCCTTTGCCCCCAGAATTGGCTCGTTTGCGTCGATTGAAGTTCATTAGTTTCGGATTCAACAAATTTATGGGAATCATTCCGACATGGTTTGGGTCCTTATCCAAACTTCAAACCTTGTCTTTGTACGGTAATAAATTTTCAGGTTCCTTACCAAAGGCCATCTTCAACTTATCAGCACTTGAAGTAATTAGTTTGAGCTATAACCAGCTATCAGGTAGTATACCGAGAGACATTGGAAATTTAACAACGTTGAAAAAGATCTACCTTGATGATAATAATTTTATGGAAATTCCAAATGAGATCAGTGCTTTAACTCAACTGGAGAAGTTGGCTGTGGAAGAAAACGCCCTAGAAGGAAATGTTCCTATGGTTGTCTTCAACATGTCTTCTTTGATTATTTTGACTCTACATGGAAACAACTTGAAGGGTAGACTTCCAGACAATATGTGTCAGAATCTTCCTTATATTCAAGGGTTGTATTTCAGTCAGAACAAGCTTGAAGGTCCACTTCCATCCATATTTTGGCAATACAAACAACTTGTTGATTTAGCATTGTGGCGTAACAACTTCAGTGGAAGCATACCCAAAAATATTGGGAATGCAACCCAGTTAATGCAGCTTGATCTTAGCGAAAATAATTTAACAGGATGTACAGCTGATTCTGATTTCGTCTAA

Protein Analysis

334

Amino Acids

37.02

Weight (kDa)

6.42

Isoelectric Point (pI)

31.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 28 - 67 4.3e-11 Leucine rich repeat N-terminal domain
LRR_14 PF23598 77 - 179 1.7e-08 Leucine-rich repeat region
LRR_8 PF13855 122 - 180 1.7e-08 Leucine rich repeat
LRR_8 PF13855 161 - 204 1.3e-06 Leucine rich repeat
LRR_14 PF23598 167 - 267 1e-08 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 852
AccI GTMKAC 3 cut(s) 27, 550, 760
AccII CGCG 1 cut(s) 208
AciI CCGC 1 cut(s) 44
AclI AACGTT 1 cut(s) 578
AcsI RAATTY 4 cut(s) 392, 464, 568, 618
AcuI CTGAAG 1 cut(s) 883
AfaI GTAC 2 cut(s) 455, 982
AfiI CCNNNNNNNGG 3 cut(s) 275, 346, 852
AflIII ACRYGT 1 cut(s) 711
AjuI GAANNNNNNNTTGG 2 cut(s) 246, 278
AluBI AGCT 7 cut(s) 51, 274, 528, 538, 826, 949, 986
AluI AGCT 7 cut(s) 51, 274, 528, 538, 826, 949, 986
Alw21I GWGCWC 1 cut(s) 11
Alw26I GTCTC 2 cut(s) 254, 552
AoxI GGCC 1 cut(s) 486
ApeKI GCWGC 3 cut(s) 51, 65, 946
ApoI RAATTY 4 cut(s) 392, 464, 568, 618
AspLEI GCGC 2 cut(s) 208, 210
AspS9I GGNCC 3 cut(s) 329, 423, 833
AsuHPI GGTGA 2 cut(s) 115, 142
AsuNHI GCTAGC 1 cut(s) 47
AvaII GGWCC 3 cut(s) 329, 423, 833
BbsI GAAGAC 2 cut(s) 697, 708
Bbv12I GWGCWC 1 cut(s) 11
BbvI GCAGC 3 cut(s) 38, 77, 958
BccI CCATC 2 cut(s) 497, 850
BcoDI GTCTC 2 cut(s) 254, 552
BfaI CTAG 3 cut(s) 48, 275, 680
BfmI CTRYAG 1 cut(s) 60
BglII AGATCT 1 cut(s) 588
BisI GCNGC 4 cut(s) 45, 52, 66, 947
BlsI GCNGC 4 cut(s) 46, 53, 67, 948
Bme18I GGWCC 3 cut(s) 329, 423, 833
BmgT120I GGNCC 3 cut(s) 329, 423, 833
BmiI GGNNCC 2 cut(s) 424, 475
BmrI ACTGGG 2 cut(s) 193, 931
BmtI GCTAGC 1 cut(s) 51
BmuI ACTGGG 2 cut(s) 193, 931
BpiI GAAGAC 2 cut(s) 697, 708
BpmI CTGGAG 1 cut(s) 671
BpuEI CTTGAG 1 cut(s) 328
BsaI GGTCTC 1 cut(s) 254
BsaJI CCNNGG 2 cut(s) 253, 325
BsaXI ACNNNNNCTCC 2 cut(s) 154, 184
Bsc4I CCNNNNNNNGG 3 cut(s) 275, 346, 852
Bse1I ACTGG 6 cut(s) 91, 126, 161, 188, 654, 937
BseDI CCNNGG 2 cut(s) 253, 325
BseGI GGATG 2 cut(s) 842, 983
BseLI CCNNNNNNNGG 3 cut(s) 275, 346, 852
BseNI ACTGG 6 cut(s) 91, 126, 161, 188, 654, 937
BsePI GCGCGC 1 cut(s) 206
BseXI GCAGC 3 cut(s) 38, 77, 958
Bsh1236I CGCG 1 cut(s) 208
BshFI GGCC 1 cut(s) 488
BsiHKAI GWGCWC 1 cut(s) 11
BslI CCNNNNNNNGG 3 cut(s) 275, 346, 852
BsmAI GTCTC 2 cut(s) 254, 552
BsmI GAATGC 1 cut(s) 934
BsnI GGCC 1 cut(s) 488
Bso31I GGTCTC 1 cut(s) 254
Bsp1286I GDGCHC 1 cut(s) 11
Bsp1407I TGTACA 1 cut(s) 980
Bsp143I GATC 4 cut(s) 144, 588, 630, 952
BspACI CCGC 1 cut(s) 44
BspANI GGCC 1 cut(s) 488
BspFNI CGCG 1 cut(s) 208
BspLI GGNNCC 2 cut(s) 424, 475
BspOI GCTAGC 1 cut(s) 51
BspQI GCTCTTC 1 cut(s) 105
BspTNI GGTCTC 1 cut(s) 254
BsrGI TGTACA 1 cut(s) 980
BsrI ACTGG 6 cut(s) 91, 126, 161, 188, 654, 937
BssECI CCNNGG 2 cut(s) 253, 325
BssHII GCGCGC 1 cut(s) 206
BssMI GATC 4 cut(s) 144, 588, 630, 952
BssNAI GTATAC 1 cut(s) 551
BssT1I CCWWGG 2 cut(s) 253, 325
Bst1107I GTATAC 1 cut(s) 551
Bst4CI ACNGT 2 cut(s) 320, 458
Bst6I CTCTTC 1 cut(s) 105
BstAUI TGTACA 1 cut(s) 980
BstC8I GCNNGC 2 cut(s) 49, 208
BstDEI CTNAG 2 cut(s) 215, 956
BstF5I GGATG 2 cut(s) 842, 983
BstFNI CGCG 1 cut(s) 208
BstHHI GCGC 2 cut(s) 208, 210
BstKTI GATC 4 cut(s) 147, 591, 633, 955
BstMAI GTCTC 2 cut(s) 254, 552
BstMBI GATC 4 cut(s) 144, 588, 630, 952
BstMWI GCNNNNNNNGC 2 cut(s) 104, 113
BstNSI RCATGY 1 cut(s) 715
BstSFI CTRYAG 1 cut(s) 60
BstUI CGCG 1 cut(s) 208
BstV1I GCAGC 3 cut(s) 38, 77, 958
BstV2I GAAGAC 2 cut(s) 697, 708
BstX2I RGATCY 1 cut(s) 588
BstYI RGATCY 1 cut(s) 588
BstZ17I GTATAC 1 cut(s) 551
BsuRI GGCC 1 cut(s) 488
BtsCI GGATG 2 cut(s) 842, 983
BtsIMutI CAGTG 3 cut(s) 133, 640, 907
Cac8I GCNNGC 2 cut(s) 49, 208
CfoI GCGC 2 cut(s) 208, 210
Cfr13I GGNCC 3 cut(s) 329, 423, 833
CseI GACGC 1 cut(s) 347
Csp6I GTAC 2 cut(s) 454, 981
CspCI CAANNNNNGTGG 2 cut(s) 883, 918
CviAII CATG 3 cut(s) 414, 712, 740
CviQI GTAC 2 cut(s) 454, 981
DdeI CTNAG 2 cut(s) 215, 956
DpnI GATC 4 cut(s) 146, 590, 632, 954
DpnII GATC 4 cut(s) 144, 588, 630, 952
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
Eco130I CCWWGG 2 cut(s) 253, 325
Eco31I GGTCTC 1 cut(s) 254
Eco47I GGWCC 3 cut(s) 329, 423, 833
Eco57I CTGAAG 1 cut(s) 883
EcoO109I RGGNCCY 2 cut(s) 329, 423
EcoT14I CCWWGG 2 cut(s) 253, 325
ErhI CCWWGG 2 cut(s) 253, 325
FaeI CATG 3 cut(s) 417, 715, 743
FalI AAGNNNNNCTT 4 cut(s) 476, 508, 822, 854
FatI CATG 3 cut(s) 413, 711, 739
FblI GTMKAC 3 cut(s) 27, 550, 760
Fnu4HI GCNGC 4 cut(s) 45, 52, 66, 947
FokI GGATG 2 cut(s) 829, 990
Fsp4HI GCNGC 4 cut(s) 45, 52, 66, 947
FspBI CTAG 3 cut(s) 48, 275, 680
GlaI GCGC 2 cut(s) 207, 209
GluI GCNGC 4 cut(s) 45, 52, 66, 947
GsuI CTGGAG 1 cut(s) 671
HaeIII GGCC 1 cut(s) 488
HgaI GACGC 1 cut(s) 347
HhaI GCGC 2 cut(s) 208, 210
Hin1II CATG 3 cut(s) 417, 715, 743
Hin6I GCGC 2 cut(s) 206, 208
HinP1I GCGC 2 cut(s) 206, 208
HincII GTYRAC 1 cut(s) 162
HindII GTYRAC 1 cut(s) 162
HindIII AAGCTT 1 cut(s) 824
HinfI GANTC 5 cut(s) 384, 402, 733, 784, 989
HphI GGTGA 2 cut(s) 115, 142
Hpy166II GTNNAC 5 cut(s) 28, 162, 551, 761, 836
Hpy188I TCNGA 5 cut(s) 383, 411, 783, 819, 994
Hpy188III TCNNGA 1 cut(s) 767
Hpy8I GTNNAC 5 cut(s) 28, 162, 551, 761, 836
Hpy99I CGWCG 1 cut(s) 363
HpyAV CCTTC 3 cut(s) 677, 748, 824
HpyCH4III ACNGT 2 cut(s) 320, 458
HpyCH4IV ACGT 1 cut(s) 578
HpyCH4V TGCA 3 cut(s) 180, 932, 946
HpyF10VI GCNNNNNNNGC 2 cut(s) 104, 113
HpyF3I CTNAG 2 cut(s) 215, 956
HpySE526I ACGT 1 cut(s) 578
Hsp92II CATG 3 cut(s) 417, 715, 743
HspAI GCGC 2 cut(s) 206, 208
Kzo9I GATC 4 cut(s) 144, 588, 630, 952
LguI GCTCTTC 1 cut(s) 105
Lsp1109I GCAGC 3 cut(s) 38, 77, 958
MaeI CTAG 3 cut(s) 48, 275, 680
MaeII ACGT 1 cut(s) 578
MaeIII GTNAC 3 cut(s) 128, 193, 890
MalI GATC 4 cut(s) 146, 590, 632, 954
MboI GATC 4 cut(s) 144, 588, 630, 952
MboII GAAGA 8 cut(s) 10, 92, 139, 484, 680, 697, 708, 779
MflI RGATCY 1 cut(s) 588
MhlI GDGCHC 1 cut(s) 11
MluCI AATT 8 cut(s) 344, 392, 464, 516, 568, 607, 618, 967
MlyI GAGTC 1 cut(s) 727
MmeI TCCRAC 1 cut(s) 434
MnlI CCTC 3 cut(s) 144, 245, 276
MseI TTAA 5 cut(s) 56, 572, 641, 941, 971
MspA1I CMGCKG 1 cut(s) 986
Mva1269I GAATGC 1 cut(s) 934
MvnI CGCG 1 cut(s) 208
MwoI GCNNNNNNNGC 2 cut(s) 104, 113
NdeII GATC 4 cut(s) 144, 588, 630, 952
NheI GCTAGC 1 cut(s) 47
NlaIII CATG 3 cut(s) 417, 715, 743
NlaIV GGNNCC 2 cut(s) 424, 475
NmuCI GTSAC 1 cut(s) 128
NspI RCATGY 1 cut(s) 715
PauI GCGCGC 1 cut(s) 206
PciI ACATGT 1 cut(s) 711
PciSI GCTCTTC 1 cut(s) 105
PcsI WCGNNNNNNNCGW 1 cut(s) 358
PctI GAATGC 1 cut(s) 934
PfeI GAWTC 4 cut(s) 384, 402, 784, 989
PflMI CCANNNNNTGG 1 cut(s) 852
PkrI GCNGC 4 cut(s) 46, 53, 67, 948
PleI GAGTC 1 cut(s) 727
PpsI GAGTC 1 cut(s) 727
PpuMI RGGWCCY 2 cut(s) 329, 423
PscI ACATGT 1 cut(s) 711
Psp1406I AACGTT 1 cut(s) 578
Psp5II RGGWCCY 2 cut(s) 329, 423
PspN4I GGNNCC 2 cut(s) 424, 475
PspPI GGNCC 3 cut(s) 329, 423, 833
PspPPI RGGWCCY 2 cut(s) 329, 423
PsrI GAACNNNNNNTAC 2 cut(s) 224, 256
PsuI RGATCY 1 cut(s) 588
PteI GCGCGC 1 cut(s) 206
PvuII CAGCTG 1 cut(s) 986
RsaI GTAC 2 cut(s) 455, 982
RsaNI GTAC 2 cut(s) 454, 981
SapI GCTCTTC 1 cut(s) 105
SaqAI TTAA 5 cut(s) 56, 572, 641, 941, 971
SatI GCNGC 4 cut(s) 45, 52, 66, 947
Sau3AI GATC 4 cut(s) 144, 588, 630, 952
Sau96I GGNCC 3 cut(s) 329, 423, 833
SchI GAGTC 1 cut(s) 727
SduI GDGCHC 1 cut(s) 11
SfcI CTRYAG 1 cut(s) 60
SinI GGWCC 3 cut(s) 329, 423, 833
SmlI CTYRAG 1 cut(s) 307
SmoI CTYRAG 1 cut(s) 307
Sse9I AATT 8 cut(s) 344, 392, 464, 516, 568, 607, 618, 967
SsiI CCGC 1 cut(s) 44
SspI AATATT 1 cut(s) 922
SspMI CTAG 3 cut(s) 48, 275, 680
StyI CCWWGG 2 cut(s) 253, 325
TaaI ACNGT 2 cut(s) 320, 458
TaiI ACGT 1 cut(s) 581
TaqI TCGA 1 cut(s) 361
TasI AATT 8 cut(s) 344, 392, 464, 516, 568, 607, 618, 967
TatI WGTACW 1 cut(s) 980
TauI GCSGC 1 cut(s) 47
TfiI GAWTC 4 cut(s) 384, 402, 784, 989
Tru1I TTAA 5 cut(s) 56, 572, 641, 941, 971
Tru9I TTAA 5 cut(s) 56, 572, 641, 941, 971
TscAI CASTG 3 cut(s) 133, 640, 907
TseFI GTSAC 1 cut(s) 128
TseI GCWGC 3 cut(s) 51, 65, 946
Tsp45I GTSAC 1 cut(s) 128
TspDTI ATGAA 1 cut(s) 361
TspRI CASTG 3 cut(s) 133, 640, 907
Van91I CCANNNNNTGG 1 cut(s) 852
VpaK11BI GGWCC 3 cut(s) 329, 423, 833
XapI RAATTY 4 cut(s) 392, 464, 568, 618
XceI RCATGY 1 cut(s) 715
XcmI CCANNNNNNNNNTGG 1 cut(s) 849
XmiI GTMKAC 3 cut(s) 27, 550, 760
XspI CTAG 3 cut(s) 48, 275, 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.