Rh4BG106900

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Reverse (-)
18291181 .. 18292364
1184 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG106900.1

Sequence Viewer

Length: 876 bp
ATGGTAACAAATCGATTTTTCCTCTTGCAAACAAGGTTGTTGCTGGTATACTACTGTTGTATTGCTAGCTTTGCTATAGTGGTAGCAGTACAAACCAGCAATGTCTCCACAGATGAGTCTGCTCTTCTTTCTCTCAAAGCCAGCATCACCAGTGAAGGTCAAAACATGATCTTCACCAACTGGTCCACCAACAACATTTGCAACTGGGCTGGGGTTACTTGTGGTGCAAGCCACCGCAGAGTCAGAGGCACCATTCCTGCGGAGCTAGGTAACCTATCATTTCTTGTTCATCTGGACTTCACAAATAACAGCTTCCAAGGTCCCTTGCCCCGAGAATTGGCTCGTCTACACAGGTTGAAGTTCATTAGCTTTGGATTTAACAACTTTGGGGGAACAATTCCATCATGGTTTGGGTCCTTCTCCAAACTTCAAACCTTGGATTTGTACGGTAATCAATTTTCAGGTTCCATACCCGCTGCCATCTTCAACTTATTTGCACTACAAGTGATAGATCTCAAGAATAATCATCTATCAGGTAGCATACCAGCAGAAATCGGGAACTTAAAACTGCTCAAGGCAATATACCTTGATAACAATGAATTCGAAGAAATTCCAAACGAGATTGGCTATTTGGACCTGGTAGAGCACTTGTTTGTGCAATCCAATGCTCTAAAAGGGCCTTTTCCCGAAGCTGTCTTCAGCATGTCTTCTTTGACTATTTTGAATCTACATGGAAACAGCTTGAATGGTAGAATTCCAGACATATCTGCCAGCATCTTCCTAATATTCAAGAACTGTATTTTGCTCACAACAAGTTTGATGGTCCAATTCCATCCACACTCTGGCAATGCAAACAGCTTCTTGTATTATCATTGA

Protein Analysis

291

Amino Acids

32.29

Weight (kDa)

6.74

Isoelectric Point (pI)

18.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 36 - 74 1.4e-09 Leucine rich repeat N-terminal domain
LRR_8 PF13855 126 - 177 1.2e-06 Leucine rich repeat
LRR_14 PF23598 137 - 244 3.2e-10 Leucine-rich repeat region
LRR_8 PF13855 191 - 248 4.5e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 248
AccB7I CCANNNNNTGG 1 cut(s) 842
AccI GTMKAC 2 cut(s) 48, 346
AciI CCGC 3 cut(s) 235, 260, 474
AcsI RAATTY 3 cut(s) 599, 609, 753
AcuI CTGAAG 1 cut(s) 682
AfaI GTAC 2 cut(s) 90, 446
AfiI CCNNNNNNNGG 2 cut(s) 337, 842
AgsI TTSAA 6 cut(s) 358, 431, 487, 724, 745, 790
AjnI CCWGG 1 cut(s) 636
AluBI AGCT 7 cut(s) 69, 265, 312, 369, 692, 741, 858
AluI AGCT 7 cut(s) 69, 265, 312, 369, 692, 741, 858
Alw21I GWGCWC 1 cut(s) 648
Alw26I GTCTC 1 cut(s) 109
Ama87I CYCGRG 1 cut(s) 330
AoxI GGCC 1 cut(s) 677
ApeKI GCWGC 1 cut(s) 476
ApoI RAATTY 3 cut(s) 599, 609, 753
Asp700I GAANNNNTTC 1 cut(s) 609
AspS9I GGNCC 6 cut(s) 183, 320, 414, 634, 677, 823
AsuHPI GGTGA 2 cut(s) 139, 166
AsuII TTCGAA 1 cut(s) 603
AsuNHI GCTAGC 1 cut(s) 65
AvaI CYCGRG 1 cut(s) 330
AvaII GGWCC 5 cut(s) 183, 320, 414, 634, 823
BanI GGYRCC 1 cut(s) 248
BbsI GAAGAC 2 cut(s) 688, 699
Bbv12I GWGCWC 1 cut(s) 648
BbvI GCAGC 1 cut(s) 463
BccI CCATC 4 cut(s) 409, 488, 814, 840
BciT130I CCWGG 1 cut(s) 638
BcoDI GTCTC 1 cut(s) 109
BfaI CTAG 2 cut(s) 66, 266
BfmI CTRYAG 1 cut(s) 75
BglII AGATCT 1 cut(s) 511
BisI GCNGC 1 cut(s) 477
BlsI GCNGC 1 cut(s) 478
Bme1390I CCNGG 1 cut(s) 638
Bme18I GGWCC 5 cut(s) 183, 320, 414, 634, 823
BmeT110I CYCGRG 1 cut(s) 330
BmgT120I GGNCC 6 cut(s) 183, 320, 414, 634, 677, 823
BmiI GGNNCC 4 cut(s) 250, 322, 415, 466
BmrFI CCNGG 1 cut(s) 638
BmrI ACTGGG 1 cut(s) 214
BmsI GCATC 2 cut(s) 153, 783
BmtI GCTAGC 1 cut(s) 69
BmuI ACTGGG 1 cut(s) 214
BpiI GAAGAC 2 cut(s) 688, 699
Bpu14I TTCGAA 1 cut(s) 603
BpuEI CTTGAG 2 cut(s) 500, 557
Bsa29I ATCGAT 1 cut(s) 13
BsaJI CCNNGG 2 cut(s) 316, 435
Bsc4I CCNNNNNNNGG 2 cut(s) 337, 842
Bse1I ACTGG 3 cut(s) 150, 185, 209
Bse3DI GCAATG 2 cut(s) 106, 853
BseBI CCWGG 1 cut(s) 638
BseCI ATCGAT 1 cut(s) 13
BseDI CCNNGG 2 cut(s) 316, 435
BseGI GGATG 1 cut(s) 832
BseLI CCNNNNNNNGG 2 cut(s) 337, 842
BseMI GCAATG 2 cut(s) 106, 853
BseNI ACTGG 3 cut(s) 150, 185, 209
BseXI GCAGC 1 cut(s) 463
BseYI CCCAGC 1 cut(s) 209
BshFI GGCC 1 cut(s) 679
BshNI GGYRCC 1 cut(s) 248
BshVI ATCGAT 1 cut(s) 13
BsiHKAI GWGCWC 1 cut(s) 648
BsiHKCI CYCGRG 1 cut(s) 330
BslFI GGGAC 1 cut(s) 306
BslI CCNNNNNNNGG 2 cut(s) 337, 842
BsmAI GTCTC 1 cut(s) 109
BsmFI GGGAC 1 cut(s) 306
BsnI GGCC 1 cut(s) 679
BsoBI CYCGRG 1 cut(s) 330
Bsp119I TTCGAA 1 cut(s) 603
Bsp1286I GDGCHC 1 cut(s) 648
Bsp143I GATC 2 cut(s) 168, 511
BspACI CCGC 3 cut(s) 235, 260, 474
BspANI GGCC 1 cut(s) 679
BspDI ATCGAT 1 cut(s) 13
BspLI GGNNCC 4 cut(s) 250, 322, 415, 466
BspOI GCTAGC 1 cut(s) 69
BspQI GCTCTTC 1 cut(s) 129
BspT104I TTCGAA 1 cut(s) 603
BspT107I GGYRCC 1 cut(s) 248
BsrDI GCAATG 2 cut(s) 106, 853
BsrI ACTGG 3 cut(s) 150, 185, 209
BssECI CCNNGG 2 cut(s) 316, 435
BssMI GATC 2 cut(s) 168, 511
BssNAI GTATAC 1 cut(s) 49
BssT1I CCWWGG 2 cut(s) 316, 435
Bst1107I GTATAC 1 cut(s) 49
Bst2UI CCWGG 1 cut(s) 638
Bst4CI ACNGT 3 cut(s) 56, 449, 797
Bst6I CTCTTC 1 cut(s) 129
BstBI TTCGAA 1 cut(s) 603
BstC8I GCNNGC 4 cut(s) 67, 142, 229, 772
BstEII GGTNACC 1 cut(s) 269
BstF5I GGATG 1 cut(s) 832
BstKTI GATC 2 cut(s) 171, 514
BstMAI GTCTC 1 cut(s) 109
BstMBI GATC 2 cut(s) 168, 511
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstNI CCWGG 1 cut(s) 638
BstNSI RCATGY 1 cut(s) 706
BstPI GGTNACC 1 cut(s) 269
BstSCI CCNGG 1 cut(s) 636
BstSFI CTRYAG 1 cut(s) 75
BstV1I GCAGC 1 cut(s) 463
BstV2I GAAGAC 2 cut(s) 688, 699
BstX2I RGATCY 1 cut(s) 511
BstYI RGATCY 1 cut(s) 511
BstZ17I GTATAC 1 cut(s) 49
Bsu15I ATCGAT 1 cut(s) 13
BsuRI GGCC 1 cut(s) 679
BsuTUI ATCGAT 1 cut(s) 13
BtsCI GGATG 1 cut(s) 832
BtsIMutI CAGTG 1 cut(s) 157
Cac8I GCNNGC 4 cut(s) 67, 142, 229, 772
Cfr13I GGNCC 6 cut(s) 183, 320, 414, 634, 677, 823
ClaI ATCGAT 1 cut(s) 13
CsiI ACCWGGT 1 cut(s) 636
Csp6I GTAC 2 cut(s) 89, 445
CviAII CATG 4 cut(s) 166, 405, 703, 731
CviQI GTAC 2 cut(s) 89, 445
DpnI GATC 2 cut(s) 170, 513
DpnII GATC 2 cut(s) 168, 511
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
Eco130I CCWWGG 2 cut(s) 316, 435
Eco47I GGWCC 5 cut(s) 183, 320, 414, 634, 823
Eco57I CTGAAG 1 cut(s) 682
Eco88I CYCGRG 1 cut(s) 330
Eco91I GGTNACC 1 cut(s) 269
EcoO109I RGGNCCY 3 cut(s) 320, 414, 677
EcoO65I GGTNACC 1 cut(s) 269
EcoRI GAATTC 2 cut(s) 599, 753
EcoRII CCWGG 1 cut(s) 636
EcoT14I CCWWGG 2 cut(s) 316, 435
ErhI CCWWGG 2 cut(s) 316, 435
FaeI CATG 4 cut(s) 169, 408, 706, 734
FaqI GGGAC 1 cut(s) 306
FatI CATG 4 cut(s) 165, 404, 702, 730
FauI CCCGC 1 cut(s) 481
FblI GTMKAC 2 cut(s) 48, 346
Fnu4HI GCNGC 1 cut(s) 477
FokI GGATG 1 cut(s) 819
Fsp4HI GCNGC 1 cut(s) 477
FspBI CTAG 2 cut(s) 66, 266
GluI GCNGC 1 cut(s) 477
GsaI CCCAGC 1 cut(s) 213
HaeIII GGCC 1 cut(s) 679
Hin1II CATG 4 cut(s) 169, 408, 706, 734
HinfI GANTC 3 cut(s) 116, 240, 724
HphI GGTGA 2 cut(s) 139, 166
Hpy166II GTNNAC 3 cut(s) 49, 186, 347
Hpy188I TCNGA 1 cut(s) 245
Hpy188III TCNNGA 6 cut(s) 293, 517, 556, 686, 758, 790
Hpy8I GTNNAC 3 cut(s) 49, 186, 347
HpyAV CCTTC 2 cut(s) 149, 427
HpyCH4III ACNGT 3 cut(s) 56, 449, 797
HpyCH4V TGCA 6 cut(s) 28, 201, 227, 497, 658, 851
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
Hsp92II CATG 4 cut(s) 169, 408, 706, 734
Kzo9I GATC 2 cut(s) 168, 511
LguI GCTCTTC 1 cut(s) 129
LmnI GCTCC 1 cut(s) 262
Lsp1109I GCAGC 1 cut(s) 463
LweI GCATC 2 cut(s) 153, 783
MabI ACCWGGT 1 cut(s) 636
MaeI CTAG 2 cut(s) 66, 266
MaeIII GTNAC 3 cut(s) 4, 214, 269
MalI GATC 2 cut(s) 170, 513
MboI GATC 2 cut(s) 168, 511
MboII GAAGA 7 cut(s) 116, 163, 475, 617, 688, 699, 769
MflI RGATCY 1 cut(s) 511
MhlI GDGCHC 1 cut(s) 648
MluCI AATT 7 cut(s) 335, 396, 455, 599, 609, 753, 827
MlyI GAGTC 2 cut(s) 125, 249
MnlI CCTC 2 cut(s) 32, 239
MroXI GAANNNNTTC 1 cut(s) 609
MseI TTAA 2 cut(s) 378, 563
MspA1I CMGCKG 1 cut(s) 476
MspR9I CCNGG 1 cut(s) 638
MvaI CCWGG 1 cut(s) 638
MwoI GCNNNNNNNGC 1 cut(s) 71
NdeII GATC 2 cut(s) 168, 511
NheI GCTAGC 1 cut(s) 65
NlaIII CATG 4 cut(s) 169, 408, 706, 734
NlaIV GGNNCC 4 cut(s) 250, 322, 415, 466
NspI RCATGY 1 cut(s) 706
NspV TTCGAA 1 cut(s) 603
PciSI GCTCTTC 1 cut(s) 129
PdmI GAANNNNTTC 1 cut(s) 609
PfeI GAWTC 1 cut(s) 724
PflMI CCANNNNNTGG 1 cut(s) 842
PkrI GCNGC 1 cut(s) 478
PleI GAGTC 2 cut(s) 124, 248
PpsI GAGTC 2 cut(s) 124, 248
PpuMI RGGWCCY 2 cut(s) 320, 414
Psp5II RGGWCCY 2 cut(s) 320, 414
Psp6I CCWGG 1 cut(s) 636
PspEI GGTNACC 1 cut(s) 269
PspFI CCCAGC 1 cut(s) 209
PspGI CCWGG 1 cut(s) 636
PspN4I GGNNCC 4 cut(s) 250, 322, 415, 466
PspPI GGNCC 6 cut(s) 183, 320, 414, 634, 677, 823
PspPPI RGGWCCY 2 cut(s) 320, 414
PsuI RGATCY 1 cut(s) 511
RsaI GTAC 2 cut(s) 90, 446
RsaNI GTAC 2 cut(s) 89, 445
SapI GCTCTTC 1 cut(s) 129
SaqAI TTAA 2 cut(s) 378, 563
SatI GCNGC 1 cut(s) 477
Sau3AI GATC 2 cut(s) 168, 511
Sau96I GGNCC 6 cut(s) 183, 320, 414, 634, 677, 823
SchI GAGTC 2 cut(s) 125, 249
ScrFI CCNGG 1 cut(s) 638
SduI GDGCHC 1 cut(s) 648
SexAI ACCWGGT 1 cut(s) 636
SfaNI GCATC 2 cut(s) 153, 783
SfcI CTRYAG 1 cut(s) 75
SfuI TTCGAA 1 cut(s) 603
SinI GGWCC 5 cut(s) 183, 320, 414, 634, 823
SmlI CTYRAG 2 cut(s) 515, 572
SmoI CTYRAG 2 cut(s) 515, 572
Sse9I AATT 7 cut(s) 335, 396, 455, 599, 609, 753, 827
SsiI CCGC 3 cut(s) 235, 260, 474
SspI AATATT 1 cut(s) 786
SspMI CTAG 2 cut(s) 66, 266
StyD4I CCNGG 1 cut(s) 636
StyI CCWWGG 2 cut(s) 316, 435
TaaI ACNGT 3 cut(s) 56, 449, 797
TaqI TCGA 2 cut(s) 13, 603
TasI AATT 7 cut(s) 335, 396, 455, 599, 609, 753, 827
TatI WGTACW 1 cut(s) 88
TfiI GAWTC 1 cut(s) 724
Tru1I TTAA 2 cut(s) 378, 563
Tru9I TTAA 2 cut(s) 378, 563
TscAI CASTG 1 cut(s) 157
TseI GCWGC 1 cut(s) 476
TspDTI ATGAA 3 cut(s) 278, 352, 612
TspRI CASTG 1 cut(s) 157
Van91I CCANNNNNTGG 1 cut(s) 842
VpaK11BI GGWCC 5 cut(s) 183, 320, 414, 634, 823
XapI RAATTY 3 cut(s) 599, 609, 753
XceI RCATGY 1 cut(s) 706
XcmI CCANNNNNNNNNTGG 1 cut(s) 839
XmiI GTMKAC 2 cut(s) 48, 346
XmnI GAANNNNTTC 1 cut(s) 609
XspI CTAG 2 cut(s) 66, 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.