RchiOBHm_Chr4g0404471

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000229
Physical Location & Seq
Forward (+)
24258300 .. 24259037
738 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37601

Sequence Viewer

Length: 738 bp
ATGGGTCTCCAAGGCACCATTGCACCTCATGTTGGCAACCTCTCCTTCCTAGTCTTGCTCGATCTTCGAAACAACAGCTTCTCTGGGGCACTGCCACATGAGATCAGTTGCTTGCATCGCTTGAGGATACTTAAATCTAGTTACAATCAGTTGGAAGGTAACATCCCTCCAAGTTTATATTATTGTCAAAAGCTTGAAATCATATACCTCCAAAATAACAGGCTAAGCAGTCTTATACCTCTAGAGTTGGGATTCCTACCTAGCCTTCAAGAATTATATCTCCATGAAAATAAACTTACGGGTGGAATACCGTCATCTTTGGGCAATATTTCAACATTAAAAGTGTTGAGTTTGGGTGTAAATAAACTCACCGGTTCATTACCTTCTACTCTCCTCAACCTGTCTTCTCTAGTTAAAGTCTATATATATAGTAACAACATATCTGGAAGCCTACCTATGGATCTTTGCCACTATTGGCCTAGTATTCAGATCCTTTCTCTTGGGGGCCTTAACCTTGTTGGCCAAATTCCCTCAAGAATATATGAATGCACACAGCTTGTGGCCTTATCTGTGCCTTTTAATATGCTTGTGGGAAATATTCCAGAAACAATTGGGCTTTTACAAAATCTTGAAGAGCTTTATCTGGGTGCTAATGGCCTAACTGCACTACAACAAAACCTGGCATTAATGACCACTATAGTGGTCACTGAAAATAGCCAATTTGGTCACTATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

245

Amino Acids

26.83

Weight (kDa)

6.28

Isoelectric Point (pI)

51.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 9 - 147 1.4e-09 Leucine-rich repeat region
LRR_8 PF13855 60 - 99 6.3e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 14
AclWI GGATC 2 cut(s) 468, 484
AcoI YGGCCR 1 cut(s) 520
AcsI RAATTY 1 cut(s) 525
AfiI CCNNNNNNNGG 2 cut(s) 32, 457
AgeI ACCGGT 1 cut(s) 371
AgsI TTSAA 4 cut(s) 197, 269, 333, 632
AjnI CCWGG 1 cut(s) 678
AleI CACNNNNGTG 1 cut(s) 698
AluBI AGCT 4 cut(s) 78, 193, 556, 637
AluI AGCT 4 cut(s) 78, 193, 556, 637
Alw26I GTCTC 1 cut(s) 11
AlwI GGATC 2 cut(s) 468, 484
AoxI GGCC 5 cut(s) 476, 505, 520, 561, 655
ApoI RAATTY 1 cut(s) 525
AseI ATTAAT 1 cut(s) 686
AsiGI ACCGGT 1 cut(s) 371
AspS9I GGNCC 1 cut(s) 505
AsuHPI GGTGA 1 cut(s) 361
AsuII TTCGAA 1 cut(s) 67
BaeGI GKGCMC 1 cut(s) 91
BalI TGGCCA 1 cut(s) 522
BanI GGYRCC 1 cut(s) 14
BbsI GAAGAC 1 cut(s) 396
BciT130I CCWGG 1 cut(s) 680
BciVI GTATCC 1 cut(s) 120
BcoDI GTCTC 1 cut(s) 11
BfaI CTAG 6 cut(s) 50, 138, 242, 261, 410, 480
BfmI CTRYAG 1 cut(s) 696
BfuI GTATCC 1 cut(s) 120
BlpI GCTNAGC 1 cut(s) 224
Bme1390I CCNGG 1 cut(s) 680
BmgT120I GGNCC 1 cut(s) 505
BmiI GGNNCC 2 cut(s) 16, 506
BmrFI CCNGG 1 cut(s) 680
BmsI GCATC 1 cut(s) 124
BpiI GAAGAC 1 cut(s) 396
Bpu1102I GCTNAGC 1 cut(s) 224
Bpu14I TTCGAA 1 cut(s) 67
BpuEI CTTGAG 2 cut(s) 142, 517
BsaI GGTCTC 1 cut(s) 11
BsaJI CCNNGG 1 cut(s) 10
BsaWI WCCGGW 1 cut(s) 371
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 457
Bse118I RCCGGY 1 cut(s) 371
Bse3DI GCAATG 1 cut(s) 18
BseBI CCWGG 1 cut(s) 680
BseDI CCNNGG 1 cut(s) 10
BseGI GGATG 1 cut(s) 162
BseLI CCNNNNNNNGG 2 cut(s) 32, 457
BseMI GCAATG 1 cut(s) 18
BseRI GAGGAG 1 cut(s) 383
BseSI GKGCMC 1 cut(s) 91
BsgI GTGCAG 1 cut(s) 648
BshFI GGCC 5 cut(s) 478, 507, 522, 563, 657
BshNI GGYRCC 1 cut(s) 14
BshTI ACCGGT 1 cut(s) 371
BsiSI CCGG 1 cut(s) 372
BslI CCNNNNNNNGG 2 cut(s) 32, 457
BsmAI GTCTC 1 cut(s) 11
BsmI GAATGC 1 cut(s) 551
BsnI GGCC 5 cut(s) 478, 507, 522, 563, 657
Bso31I GGTCTC 1 cut(s) 11
Bsp119I TTCGAA 1 cut(s) 67
Bsp1286I GDGCHC 1 cut(s) 91
Bsp143I GATC 4 cut(s) 61, 102, 460, 489
Bsp1720I GCTNAGC 1 cut(s) 224
BspANI GGCC 5 cut(s) 478, 507, 522, 563, 657
BspLI GGNNCC 2 cut(s) 16, 506
BspPI GGATC 2 cut(s) 468, 484
BspQI GCTCTTC 1 cut(s) 627
BspT104I TTCGAA 1 cut(s) 67
BspT107I GGYRCC 1 cut(s) 14
BspTNI GGTCTC 1 cut(s) 11
BsrDI GCAATG 1 cut(s) 18
BsrFI RCCGGY 1 cut(s) 371
BssAI RCCGGY 1 cut(s) 371
BssECI CCNNGG 1 cut(s) 10
BssMI GATC 4 cut(s) 61, 102, 460, 489
BssT1I CCWWGG 1 cut(s) 10
Bst2UI CCWGG 1 cut(s) 680
Bst4CI ACNGT 1 cut(s) 312
Bst6I CTCTTC 1 cut(s) 627
BstBI TTCGAA 1 cut(s) 67
BstC8I GCNNGC 1 cut(s) 113
BstDEI CTNAG 1 cut(s) 224
BstF5I GGATG 1 cut(s) 162
BstKTI GATC 4 cut(s) 64, 105, 463, 492
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 4 cut(s) 61, 102, 460, 489
BstMWI GCNNNNNNNGC 1 cut(s) 117
BstNI CCWGG 1 cut(s) 680
BstSCI CCNGG 1 cut(s) 678
BstSFI CTRYAG 1 cut(s) 696
BstSLI GKGCMC 1 cut(s) 91
BstV2I GAAGAC 1 cut(s) 396
BstX2I RGATCY 2 cut(s) 460, 489
BstXI CCANNNNNNTGG 1 cut(s) 700
BstYI RGATCY 2 cut(s) 460, 489
BsuI GTATCC 1 cut(s) 120
BsuRI GGCC 5 cut(s) 478, 507, 522, 563, 657
BtgZI GCGATG 1 cut(s) 101
BtsCI GGATG 1 cut(s) 162
BtsI GCAGTG 1 cut(s) 89
BtsIMutI CAGTG 2 cut(s) 89, 705
Cac8I GCNNGC 1 cut(s) 113
Cfr10I RCCGGY 1 cut(s) 371
Cfr13I GGNCC 1 cut(s) 505
CspAI ACCGGT 1 cut(s) 371
CviAII CATG 3 cut(s) 29, 98, 284
DdeI CTNAG 1 cut(s) 224
DpnI GATC 4 cut(s) 63, 104, 462, 491
DpnII GATC 4 cut(s) 61, 102, 460, 489
EaeI YGGCCR 1 cut(s) 520
Eam1104I CTCTTC 1 cut(s) 627
EarI CTCTTC 1 cut(s) 627
Eco130I CCWWGG 1 cut(s) 10
Eco31I GGTCTC 1 cut(s) 11
EcoO109I RGGNCCY 1 cut(s) 505
EcoRII CCWGG 1 cut(s) 678
EcoT14I CCWWGG 1 cut(s) 10
ErhI CCWWGG 1 cut(s) 10
FaeI CATG 3 cut(s) 32, 101, 287
FatI CATG 3 cut(s) 28, 97, 283
FokI GGATG 1 cut(s) 149
FspBI CTAG 6 cut(s) 50, 138, 242, 261, 410, 480
HaeIII GGCC 5 cut(s) 478, 507, 522, 563, 657
HapII CCGG 1 cut(s) 372
Hin1II CATG 3 cut(s) 32, 101, 287
HindIII AAGCTT 1 cut(s) 191
HinfI GANTC 1 cut(s) 252
HpaII CCGG 1 cut(s) 372
HphI GGTGA 1 cut(s) 361
Hpy188I TCNGA 1 cut(s) 489
Hpy188III TCNNGA 6 cut(s) 242, 269, 444, 534, 602, 629
HpyAV CCTTC 4 cut(s) 55, 149, 275, 393
HpyCH4III ACNGT 1 cut(s) 312
HpyCH4V TGCA 4 cut(s) 23, 115, 549, 665
HpyF10VI GCNNNNNNNGC 1 cut(s) 117
HpyF3I CTNAG 1 cut(s) 224
Hsp92II CATG 3 cut(s) 32, 101, 287
Kzo9I GATC 4 cut(s) 61, 102, 460, 489
LguI GCTCTTC 1 cut(s) 627
LpnPI CCDG 9 cut(s) 69, 205, 385, 413, 429, 615, 629, 665, 692
LweI GCATC 1 cut(s) 124
MaeI CTAG 6 cut(s) 50, 138, 242, 261, 410, 480
MaeIII GTNAC 5 cut(s) 140, 158, 431, 703, 725
MalI GATC 4 cut(s) 63, 104, 462, 491
MboI GATC 4 cut(s) 61, 102, 460, 489
MboII GAAGA 3 cut(s) 56, 396, 644
MfeI CAATTG 1 cut(s) 609
MflI RGATCY 2 cut(s) 460, 489
MhlI GDGCHC 1 cut(s) 91
MlsI TGGCCA 1 cut(s) 522
MluCI AATT 4 cut(s) 272, 525, 609, 719
MluNI TGGCCA 1 cut(s) 522
MmeI TCCRAC 1 cut(s) 132
MnlI CCTC 8 cut(s) 36, 50, 117, 177, 218, 249, 404, 541
Mox20I TGGCCA 1 cut(s) 522
MscI TGGCCA 1 cut(s) 522
MseI TTAA 6 cut(s) 132, 338, 414, 510, 579, 686
MslI CAYNNNNRTG 1 cut(s) 698
Msp20I TGGCCA 1 cut(s) 522
MspI CCGG 1 cut(s) 372
MspR9I CCNGG 1 cut(s) 680
MunI CAATTG 1 cut(s) 609
Mva1269I GAATGC 1 cut(s) 551
MvaI CCWGG 1 cut(s) 680
MwoI GCNNNNNNNGC 1 cut(s) 117
NdeII GATC 4 cut(s) 61, 102, 460, 489
NlaIII CATG 3 cut(s) 32, 101, 287
NlaIV GGNNCC 2 cut(s) 16, 506
NmuCI GTSAC 2 cut(s) 703, 725
NspV TTCGAA 1 cut(s) 67
OliI CACNNNNGTG 1 cut(s) 698
PciSI GCTCTTC 1 cut(s) 627
PctI GAATGC 1 cut(s) 551
PfeI GAWTC 1 cut(s) 252
PinAI ACCGGT 1 cut(s) 371
PshBI ATTAAT 1 cut(s) 686
Psp6I CCWGG 1 cut(s) 678
PspGI CCWGG 1 cut(s) 678
PspN4I GGNNCC 2 cut(s) 16, 506
PspPI GGNCC 1 cut(s) 505
PsuI RGATCY 2 cut(s) 460, 489
RseI CAYNNNNRTG 1 cut(s) 698
SapI GCTCTTC 1 cut(s) 627
SaqAI TTAA 6 cut(s) 132, 338, 414, 510, 579, 686
Sau3AI GATC 4 cut(s) 61, 102, 460, 489
Sau96I GGNCC 1 cut(s) 505
ScrFI CCNGG 1 cut(s) 680
SduI GDGCHC 1 cut(s) 91
SfaNI GCATC 1 cut(s) 124
SfcI CTRYAG 1 cut(s) 696
SfuI TTCGAA 1 cut(s) 67
SmiMI CAYNNNNRTG 1 cut(s) 698
SmlI CTYRAG 2 cut(s) 121, 532
SmoI CTYRAG 2 cut(s) 121, 532
Sse9I AATT 4 cut(s) 272, 525, 609, 719
SspI AATATT 2 cut(s) 328, 598
SspMI CTAG 6 cut(s) 50, 138, 242, 261, 410, 480
StyD4I CCNGG 1 cut(s) 678
StyI CCWWGG 1 cut(s) 10
TaaI ACNGT 1 cut(s) 312
TaqI TCGA 2 cut(s) 60, 67
TasI AATT 4 cut(s) 272, 525, 609, 719
TfiI GAWTC 1 cut(s) 252
Tru1I TTAA 6 cut(s) 132, 338, 414, 510, 579, 686
Tru9I TTAA 6 cut(s) 132, 338, 414, 510, 579, 686
TscAI CASTG 2 cut(s) 96, 712
TseFI GTSAC 2 cut(s) 703, 725
Tsp45I GTSAC 2 cut(s) 703, 725
TspDTI ATGAA 3 cut(s) 300, 366, 558
TspRI CASTG 2 cut(s) 96, 712
VspI ATTAAT 1 cut(s) 686
XapI RAATTY 1 cut(s) 525
XbaI TCTAGA 1 cut(s) 241
XspI CTAG 6 cut(s) 50, 138, 242, 261, 410, 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.