Rroxscaffold_1G00064830

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000229
Physical Location & Seq
Reverse (-)
86643842 .. 86645654
1813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00064830.1

Sequence Viewer

Length: 714 bp
ATGATCTTCACCAACTGGTCCACCGCCACCTCTGTTTGCAACTGGGTGGGCGTTACTTGCAGTGGACGCCACCTTAGAGTTGCGGTCTTGAACCTTTCTTACTTTGGTCTCACAGGTACTATTCCTTCGGAACTTGGCAATCTATCATTTCTTGTCGAGCTGCACTTGAGAAATAACAGCTTCCATGGTAATTTGCCTGAGGAATTGGCTCGTCTGCGCCGGTTGAAGTTGATTAGCTTGGTATGGAACAACTTTATGGGAGCCATTCCATCATGGCTTGGGTCCCTGTTCAAACTTGAAAGCTTCAATTTGTTTGGTAATCGGTTTTCCGGTCCCATTCCAGCTGCTGTCTTCAACTTATCTTCATTGCAAGTACTTGATCTAAGCTATAATAAGCTATCAGGAAGAATACCAAGAGAAATCGGAAACTTAACTTTACTGTGGGTGATATACTTTGATGGTAATACATTCACAGAAATTCCCTATGAGATTGGCTCTTTGAATAAGTTGGAGTACTTGTTTGTGCAAGAAAAGGCTCTAACAGGGACTATTCTTGTGACTATCTTCAACATGTCTTCTTTGACTATTTTGACCTTACATAGAAACAACATGAATGGTAGTCTACCTGACAATCTATGTGAACACCTTCCGAGCATTCAAGAGTTAAATTTCAATTACAACCATTTCGATCAGTGGCGGAGCCAGAAATTTTAG

Protein Analysis

237

Amino Acids

26.95

Weight (kDa)

7.78

Isoelectric Point (pI)

31.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 29 - 104 1.5e-07 Leucine-rich repeat region
LRR_14 PF23598 93 - 223 2.6e-12 Leucine-rich repeat region
LRR_8 PF13855 98 - 155 7.1e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 622
AciI CCGC 3 cut(s) 24, 83, 697
AcsI RAATTY 3 cut(s) 477, 667, 707
AcyI GRCGYC 1 cut(s) 67
AfaI GTAC 3 cut(s) 118, 375, 515
AflIII ACRYGT 1 cut(s) 570
AluBI AGCT 7 cut(s) 160, 180, 237, 303, 344, 387, 397
AluI AGCT 7 cut(s) 160, 180, 237, 303, 344, 387, 397
Alw26I GTCTC 1 cut(s) 113
AlwNI CAGNNNCTG 1 cut(s) 347
ApeKI GCWGC 2 cut(s) 160, 344
ApoI RAATTY 3 cut(s) 477, 667, 707
Asp700I GAANNNNTTC 1 cut(s) 645
AspLEI GCGC 1 cut(s) 219
AspS9I GGNCC 3 cut(s) 18, 282, 332
AsuHPI GGTGA 1 cut(s) 457
AvaII GGWCC 3 cut(s) 18, 282, 332
AxyI CCTNAGG 1 cut(s) 198
BarI GAAGNNNNNNTAC 2 cut(s) 109, 141
BbsI GAAGAC 2 cut(s) 343, 567
BbvI GCAGC 2 cut(s) 147, 331
BccI CCATC 2 cut(s) 277, 452
BcoDI GTCTC 1 cut(s) 113
BisI GCNGC 2 cut(s) 161, 345
BlsI GCNGC 2 cut(s) 162, 346
BmcAI AGTACT 2 cut(s) 375, 515
Bme18I GGWCC 3 cut(s) 18, 282, 332
BmgT120I GGNCC 3 cut(s) 18, 282, 332
BmiI GGNNCC 5 cut(s) 262, 283, 284, 334, 701
BmrI ACTGGG 1 cut(s) 52
BmuI ACTGGG 1 cut(s) 52
BpiI GAAGAC 2 cut(s) 343, 567
BplI GAGNNNNNCTC 2 cut(s) 479, 511
BpuEI CTTGAG 1 cut(s) 187
BsaHI GRCGYC 1 cut(s) 67
BsaI GGTCTC 1 cut(s) 113
BsaJI CCNNGG 1 cut(s) 184
BsaWI WCCGGW 1 cut(s) 329
BsaXI ACNNNNNCTCC 2 cut(s) 503, 533
Bse118I RCCGGY 1 cut(s) 219
Bse1I ACTGG 2 cut(s) 20, 47
Bse21I CCTNAGG 1 cut(s) 198
Bse3DI GCAATG 1 cut(s) 365
BseDI CCNNGG 1 cut(s) 184
BseMI GCAATG 1 cut(s) 365
BseMII CTCAG 1 cut(s) 189
BseNI ACTGG 2 cut(s) 20, 47
BseXI GCAGC 2 cut(s) 147, 331
BsgI GTGCAG 1 cut(s) 146
BsiSI CCGG 2 cut(s) 220, 330
BslFI GGGAC 3 cut(s) 268, 318, 559
BsmAI GTCTC 1 cut(s) 113
BsmFI GGGAC 3 cut(s) 268, 318, 559
BsmI GAATGC 1 cut(s) 654
Bso31I GGTCTC 1 cut(s) 113
Bsp143I GATC 3 cut(s) 3, 379, 688
Bsp19I CCATGG 1 cut(s) 184
BspACI CCGC 3 cut(s) 24, 83, 697
BspCNI CTCAG 1 cut(s) 190
BspLI GGNNCC 5 cut(s) 262, 283, 284, 334, 701
BspTNI GGTCTC 1 cut(s) 113
BsrDI GCAATG 1 cut(s) 365
BsrFI RCCGGY 1 cut(s) 219
BsrI ACTGG 2 cut(s) 20, 47
BssAI RCCGGY 1 cut(s) 219
BssECI CCNNGG 1 cut(s) 184
BssMI GATC 3 cut(s) 3, 379, 688
BssNI GRCGYC 1 cut(s) 67
BssT1I CCWWGG 1 cut(s) 184
Bst4CI ACNGT 1 cut(s) 441
BstACI GRCGYC 1 cut(s) 67
BstDEI CTNAG 3 cut(s) 74, 198, 383
BstDSI CCRYGG 1 cut(s) 184
BstHHI GCGC 1 cut(s) 219
BstKTI GATC 3 cut(s) 6, 382, 691
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 3 cut(s) 3, 379, 688
BstMWI GCNNNNNNNGC 2 cut(s) 57, 66
BstNSI RCATGY 1 cut(s) 574
BstV1I GCAGC 2 cut(s) 147, 331
BstV2I GAAGAC 2 cut(s) 343, 567
Bsu36I CCTNAGG 1 cut(s) 198
BtgI CCRYGG 1 cut(s) 184
BtsI GCAGTG 1 cut(s) 67
BtsIMutI CAGTG 2 cut(s) 67, 698
CaiI CAGNNNCTG 1 cut(s) 347
CfoI GCGC 1 cut(s) 219
Cfr10I RCCGGY 1 cut(s) 219
Cfr13I GGNCC 3 cut(s) 18, 282, 332
CseI GACGC 1 cut(s) 75
Csp6I GTAC 3 cut(s) 117, 374, 514
CviAII CATG 4 cut(s) 185, 273, 571, 610
CviQI GTAC 3 cut(s) 117, 374, 514
DdeI CTNAG 3 cut(s) 74, 198, 383
DpnI GATC 3 cut(s) 5, 381, 690
DpnII GATC 3 cut(s) 3, 379, 688
EciI GGCGGA 1 cut(s) 712
Eco130I CCWWGG 1 cut(s) 184
Eco31I GGTCTC 1 cut(s) 113
Eco47I GGWCC 3 cut(s) 18, 282, 332
Eco81I CCTNAGG 1 cut(s) 198
EcoO109I RGGNCCY 1 cut(s) 282
EcoT14I CCWWGG 1 cut(s) 184
ErhI CCWWGG 1 cut(s) 184
FaeI CATG 4 cut(s) 188, 276, 574, 613
FaqI GGGAC 3 cut(s) 268, 318, 559
FatI CATG 4 cut(s) 184, 272, 570, 609
FblI GTMKAC 1 cut(s) 622
Fnu4HI GCNGC 2 cut(s) 161, 345
Fsp4HI GCNGC 2 cut(s) 161, 345
GlaI GCGC 1 cut(s) 218
GluI GCNGC 2 cut(s) 161, 345
HapII CCGG 2 cut(s) 220, 330
HgaI GACGC 1 cut(s) 75
HhaI GCGC 1 cut(s) 219
Hin1I GRCGYC 1 cut(s) 67
Hin1II CATG 4 cut(s) 188, 276, 574, 613
Hin6I GCGC 1 cut(s) 217
HinP1I GCGC 1 cut(s) 217
HindIII AAGCTT 1 cut(s) 301
HpaII CCGG 2 cut(s) 220, 330
HphI GGTGA 1 cut(s) 457
Hpy166II GTNNAC 4 cut(s) 21, 65, 623, 641
Hpy188I TCNGA 3 cut(s) 130, 425, 651
Hpy188III TCNNGA 3 cut(s) 88, 402, 659
Hpy8I GTNNAC 4 cut(s) 21, 65, 623, 641
HpyAV CCTTC 2 cut(s) 135, 656
HpyCH4III ACNGT 1 cut(s) 441
HpyCH4V TGCA 5 cut(s) 39, 60, 163, 370, 526
HpyF10VI GCNNNNNNNGC 2 cut(s) 57, 66
HpyF3I CTNAG 3 cut(s) 74, 198, 383
Hsp92I GRCGYC 1 cut(s) 67
Hsp92II CATG 4 cut(s) 188, 276, 574, 613
HspAI GCGC 1 cut(s) 217
KflI GGGWCCC 1 cut(s) 282
Kzo9I GATC 3 cut(s) 3, 379, 688
LmnI GCTCC 2 cut(s) 260, 699
Lsp1109I GCAGC 2 cut(s) 147, 331
MaeIII GTNAC 2 cut(s) 52, 556
MalI GATC 3 cut(s) 5, 381, 690
MboI GATC 3 cut(s) 3, 379, 688
MboII GAAGA 5 cut(s) 343, 354, 417, 556, 567
MluCI AATT 7 cut(s) 190, 203, 307, 477, 667, 673, 707
MmeI TCCRAC 1 cut(s) 489
MnlI CCTC 2 cut(s) 40, 193
MroXI GAANNNNTTC 1 cut(s) 645
MseI TTAA 2 cut(s) 431, 665
MspA1I CMGCKG 1 cut(s) 344
MspI CCGG 2 cut(s) 220, 330
Mva1269I GAATGC 1 cut(s) 654
MwoI GCNNNNNNNGC 2 cut(s) 57, 66
NcoI CCATGG 1 cut(s) 184
NdeII GATC 3 cut(s) 3, 379, 688
NlaIII CATG 4 cut(s) 188, 276, 574, 613
NlaIV GGNNCC 5 cut(s) 262, 283, 284, 334, 701
NmuCI GTSAC 1 cut(s) 556
NspI RCATGY 1 cut(s) 574
PciI ACATGT 1 cut(s) 570
PctI GAATGC 1 cut(s) 654
PdmI GAANNNNTTC 1 cut(s) 645
PkrI GCNGC 2 cut(s) 162, 346
PpuMI RGGWCCY 1 cut(s) 282
PscI ACATGT 1 cut(s) 570
Psp5II RGGWCCY 1 cut(s) 282
PspN4I GGNNCC 5 cut(s) 262, 283, 284, 334, 701
PspPI GGNCC 3 cut(s) 18, 282, 332
PspPPI RGGWCCY 1 cut(s) 282
PsrI GAACNNNNNNTAC 2 cut(s) 83, 115
PstNI CAGNNNCTG 1 cut(s) 347
PvuII CAGCTG 1 cut(s) 344
RsaI GTAC 3 cut(s) 118, 375, 515
RsaNI GTAC 3 cut(s) 117, 374, 514
SaqAI TTAA 2 cut(s) 431, 665
SatI GCNGC 2 cut(s) 161, 345
Sau3AI GATC 3 cut(s) 3, 379, 688
Sau96I GGNCC 3 cut(s) 18, 282, 332
ScaI AGTACT 2 cut(s) 375, 515
SinI GGWCC 3 cut(s) 18, 282, 332
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
Sse9I AATT 7 cut(s) 190, 203, 307, 477, 667, 673, 707
SsiI CCGC 3 cut(s) 24, 83, 697
StyI CCWWGG 1 cut(s) 184
TaaI ACNGT 1 cut(s) 441
TaqI TCGA 2 cut(s) 156, 687
TasI AATT 7 cut(s) 190, 203, 307, 477, 667, 673, 707
TatI WGTACW 2 cut(s) 373, 513
Tru1I TTAA 2 cut(s) 431, 665
Tru9I TTAA 2 cut(s) 431, 665
TscAI CASTG 2 cut(s) 67, 698
TseFI GTSAC 1 cut(s) 556
TseI GCWGC 2 cut(s) 160, 344
Tsp45I GTSAC 1 cut(s) 556
TspDTI ATGAA 2 cut(s) 354, 626
TspRI CASTG 2 cut(s) 67, 698
VpaK11BI GGWCC 3 cut(s) 18, 282, 332
XapI RAATTY 3 cut(s) 477, 667, 707
XceI RCATGY 1 cut(s) 574
XmiI GTMKAC 1 cut(s) 622
XmnI GAANNNNTTC 1 cut(s) 645
ZrmI AGTACT 2 cut(s) 375, 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.