RchiOBHm_Chr4g0404251

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000229
Physical Location & Seq
Forward (+)
23938847 .. 23939491
645 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37584

Sequence Viewer

Length: 645 bp
ATGGGACTCCAAGGCACCATTTCCCCCCATGTTGGCAACCTCTCCTTCTTAGTCTCACTTGATCCGCGAAATAACAGCTTCATTGAGTTGCTGCCACATGAAATCAGTCTTCTACCTCGCTTGAGGATACTGGTACTTCAAGATAACAAGCTGGAAGGAAATATCCCTCCAACTATACATCAATGCCAACAGCTTGAAAACATATCCCTTGCAGCAAACAGGCTGAACGGTCTTATACCTAAAGAGTTGGGTCTCTTGCCCAGACTCCAGCAATTATACCTTGGGAAAAACAGTATCATGTCTGGTGAGATTCCATCATCTTTGGGAAACATTTCAACACTAAAAAGATTGAGTTTGGACCAATGTGGCCTCACAGGTTCCTTCCCCTCTGCGCTGATAAATCTATCTTCTCTAGTTGCTATTTCTCTATATGACAACAACATTTCAGGATTTCTTCCCATTGATATTTGTGATAACCATTGGTCAAATGTTCAAATCCTTTCTGTTTCTTATAACAAATTCAGTGGTCTAATCCCATCACGGATACATCGATGTGCGCAGCTTGTGACTTTATCTTTGTCATACAATAGTCTTGTTAGGGGTATTCCTAGAGAAATTGGGAGTTTACAATTTGAAATAACCTAA

Protein Analysis

214

Amino Acids

23.5

Weight (kDa)

7.73

Isoelectric Point (pI)

48.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 39 - 99 9.2e-08 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 513
Acc16I TGCGCA 1 cut(s) 558
AccB1I GGYRCC 1 cut(s) 14
AccII CGCG 1 cut(s) 67
AciI CCGC 1 cut(s) 65
AclWI GGATC 1 cut(s) 56
AcsI RAATTY 1 cut(s) 518
AfaI GTAC 1 cut(s) 135
AfiI CCNNNNNNNGG 1 cut(s) 32
AgsI TTSAA 5 cut(s) 140, 197, 336, 494, 635
AluBI AGCT 4 cut(s) 78, 151, 193, 562
AluI AGCT 4 cut(s) 78, 151, 193, 562
Alw26I GTCTC 2 cut(s) 58, 257
AlwI GGATC 1 cut(s) 56
AoxI GGCC 1 cut(s) 367
ApeKI GCWGC 3 cut(s) 91, 212, 559
ApoI RAATTY 1 cut(s) 518
ArsI GACNNNNNNTTYG 2 cut(s) 559, 591
Asp700I GAANNNNTTC 1 cut(s) 331
AspLEI GCGC 2 cut(s) 394, 559
AspS9I GGNCC 1 cut(s) 358
AsuHPI GGTGA 1 cut(s) 317
AvaII GGWCC 1 cut(s) 358
BanI GGYRCC 1 cut(s) 14
BbsI GAAGAC 1 cut(s) 101
BbvI GCAGC 3 cut(s) 78, 224, 571
BccI CCATC 2 cut(s) 322, 544
BciVI GTATCC 2 cut(s) 120, 537
BcoDI GTCTC 2 cut(s) 58, 257
BfaI CTAG 2 cut(s) 413, 609
BfuI GTATCC 2 cut(s) 120, 537
BisI GCNGC 3 cut(s) 92, 213, 560
BlsI GCNGC 3 cut(s) 93, 214, 561
Bme18I GGWCC 1 cut(s) 358
BmgT120I GGNCC 1 cut(s) 358
BmiI GGNNCC 2 cut(s) 16, 379
BpiI GAAGAC 1 cut(s) 101
BpmI CTGGAG 1 cut(s) 251
BpuEI CTTGAG 1 cut(s) 142
Bsa29I ATCGAT 1 cut(s) 550
BsaI GGTCTC 1 cut(s) 257
BsaJI CCNNGG 2 cut(s) 10, 280
Bsc4I CCNNNNNNNGG 1 cut(s) 32
Bse1I ACTGG 1 cut(s) 135
BseCI ATCGAT 1 cut(s) 550
BseDI CCNNGG 2 cut(s) 10, 280
BseLI CCNNNNNNNGG 1 cut(s) 32
BseNI ACTGG 1 cut(s) 135
BseXI GCAGC 3 cut(s) 78, 224, 571
Bsh1236I CGCG 1 cut(s) 67
BshFI GGCC 1 cut(s) 369
BshNI GGYRCC 1 cut(s) 14
BshVI ATCGAT 1 cut(s) 550
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 1 cut(s) 32
BsmAI GTCTC 2 cut(s) 58, 257
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 1 cut(s) 369
Bso31I GGTCTC 1 cut(s) 257
Bsp143I GATC 1 cut(s) 61
BspACI CCGC 1 cut(s) 65
BspANI GGCC 1 cut(s) 369
BspDI ATCGAT 1 cut(s) 550
BspFNI CGCG 1 cut(s) 67
BspLI GGNNCC 2 cut(s) 16, 379
BspPI GGATC 1 cut(s) 56
BspT107I GGYRCC 1 cut(s) 14
BspTNI GGTCTC 1 cut(s) 257
BsrI ACTGG 1 cut(s) 135
BssECI CCNNGG 2 cut(s) 10, 280
BssMI GATC 1 cut(s) 61
BssT1I CCWWGG 2 cut(s) 10, 280
Bst4CI ACNGT 2 cut(s) 230, 293
BstDEI CTNAG 1 cut(s) 49
BstFNI CGCG 1 cut(s) 67
BstHHI GCGC 2 cut(s) 394, 559
BstKTI GATC 1 cut(s) 64
BstMAI GTCTC 2 cut(s) 58, 257
BstMBI GATC 1 cut(s) 61
BstUI CGCG 1 cut(s) 67
BstV1I GCAGC 3 cut(s) 78, 224, 571
BstV2I GAAGAC 1 cut(s) 101
Bsu15I ATCGAT 1 cut(s) 550
BsuI GTATCC 2 cut(s) 120, 537
BsuRI GGCC 1 cut(s) 369
BsuTUI ATCGAT 1 cut(s) 550
BtsIMutI CAGTG 1 cut(s) 529
CfoI GCGC 2 cut(s) 394, 559
Cfr13I GGNCC 1 cut(s) 358
ClaI ATCGAT 1 cut(s) 550
Csp6I GTAC 1 cut(s) 134
CspCI CAANNNNNGTGG 2 cut(s) 505, 540
CviAII CATG 3 cut(s) 29, 98, 298
CviJI RGCY 6 cut(s) 78, 151, 193, 223, 369, 562
CviKI_1 RGCY 6 cut(s) 78, 151, 193, 223, 369, 562
CviQI GTAC 1 cut(s) 134
DdeI CTNAG 1 cut(s) 49
DpnI GATC 1 cut(s) 63
DpnII GATC 1 cut(s) 61
Eco130I CCWWGG 2 cut(s) 10, 280
Eco31I GGTCTC 1 cut(s) 257
Eco47I GGWCC 1 cut(s) 358
EcoT14I CCWWGG 2 cut(s) 10, 280
ErhI CCWWGG 2 cut(s) 10, 280
FaeI CATG 3 cut(s) 32, 101, 301
FaqI GGGAC 1 cut(s) 18
FatI CATG 3 cut(s) 28, 97, 297
Fnu4HI GCNGC 3 cut(s) 92, 213, 560
Fsp4HI GCNGC 3 cut(s) 92, 213, 560
FspBI CTAG 2 cut(s) 413, 609
FspI TGCGCA 1 cut(s) 558
GlaI GCGC 2 cut(s) 393, 558
GluI GCNGC 3 cut(s) 92, 213, 560
GsuI CTGGAG 1 cut(s) 251
HaeIII GGCC 1 cut(s) 369
HhaI GCGC 2 cut(s) 394, 559
Hin1II CATG 3 cut(s) 32, 101, 301
Hin6I GCGC 2 cut(s) 392, 557
HinP1I GCGC 2 cut(s) 392, 557
HinfI GANTC 3 cut(s) 6, 264, 310
HphI GGTGA 1 cut(s) 317
Hpy166II GTNNAC 1 cut(s) 626
Hpy188III TCNNGA 2 cut(s) 140, 447
Hpy8I GTNNAC 1 cut(s) 626
HpyAV CCTTC 3 cut(s) 55, 149, 391
HpyCH4III ACNGT 2 cut(s) 230, 293
HpyCH4V TGCA 1 cut(s) 212
HpyF3I CTNAG 1 cut(s) 49
Hsp92II CATG 3 cut(s) 32, 101, 301
HspAI GCGC 2 cut(s) 392, 557
Kzo9I GATC 1 cut(s) 61
LpnPI CCDG 8 cut(s) 116, 137, 205, 274, 281, 288, 360, 432
Lsp1109I GCAGC 3 cut(s) 78, 224, 571
MaeI CTAG 2 cut(s) 413, 609
MaeIII GTNAC 1 cut(s) 565
MalI GATC 1 cut(s) 63
MboI GATC 1 cut(s) 61
MboII GAAGA 3 cut(s) 101, 399, 446
MluCI AATT 4 cut(s) 272, 518, 615, 629
MlyI GAGTC 1 cut(s) 258
MmeI TCCRAC 1 cut(s) 194
MnlI CCTC 6 cut(s) 50, 117, 126, 177, 380, 397
MroXI GAANNNNTTC 1 cut(s) 331
MslI CAYNNNNRTG 1 cut(s) 552
MvnI CGCG 1 cut(s) 67
NdeII GATC 1 cut(s) 61
NlaIII CATG 3 cut(s) 32, 101, 301
NlaIV GGNNCC 2 cut(s) 16, 379
NmuCI GTSAC 1 cut(s) 565
NsbI TGCGCA 1 cut(s) 558
PcsI WCGNNNNNNNCGW 1 cut(s) 547
PdmI GAANNNNTTC 1 cut(s) 331
PfeI GAWTC 1 cut(s) 310
PkrI GCNGC 3 cut(s) 93, 214, 561
PleI GAGTC 1 cut(s) 258
PpsI GAGTC 1 cut(s) 258
PsiI TTATAA 1 cut(s) 513
PspN4I GGNNCC 2 cut(s) 16, 379
PspPI GGNCC 1 cut(s) 358
RsaI GTAC 1 cut(s) 135
RsaNI GTAC 1 cut(s) 134
RseI CAYNNNNRTG 1 cut(s) 552
SatI GCNGC 3 cut(s) 92, 213, 560
Sau3AI GATC 1 cut(s) 61
Sau96I GGNCC 1 cut(s) 358
SchI GAGTC 1 cut(s) 258
SinI GGWCC 1 cut(s) 358
SmiMI CAYNNNNRTG 1 cut(s) 552
SmlI CTYRAG 1 cut(s) 121
SmoI CTYRAG 1 cut(s) 121
Sse9I AATT 4 cut(s) 272, 518, 615, 629
SsiI CCGC 1 cut(s) 65
SspMI CTAG 2 cut(s) 413, 609
StyI CCWWGG 2 cut(s) 10, 280
TaaI ACNGT 2 cut(s) 230, 293
TaqI TCGA 1 cut(s) 550
TasI AATT 4 cut(s) 272, 518, 615, 629
TfiI GAWTC 1 cut(s) 310
TscAI CASTG 1 cut(s) 529
TseFI GTSAC 1 cut(s) 565
TseI GCWGC 3 cut(s) 91, 212, 559
Tsp45I GTSAC 1 cut(s) 565
TspDTI ATGAA 2 cut(s) 70, 114
TspGWI ACGGA 1 cut(s) 556
TspRI CASTG 1 cut(s) 529
VpaK11BI GGWCC 1 cut(s) 358
XapI RAATTY 1 cut(s) 518
XmnI GAANNNNTTC 1 cut(s) 331
XspI CTAG 2 cut(s) 413, 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.