Rw0G017510

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00783
Physical Location & Seq
Reverse (-)
22524 .. 25108
2585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G017510.1

Sequence Viewer

Length: 1023 bp
ATGGCGACTAGCTGCTTAACTACGGCAGCACAAACCAAGCTTAACATCACCACAGACCAGTCTGCTCTTCTTGCTCTCAAAGCCCGTATCACCAGTGACCCTCAAAACATGATCTTCACCAACTGGTCAACCACTACTCCTATTTGCAACTGGGTTGGGGTCACTTGTGGTGCACGCCATCATCGAGTCGCAGACTTAAACCTCTCTTACTTTGGTCTCACAAGCACCATTCCTCCGGAGTTAGGAAACTTATCATTTCTTGTTAATATGGACTTCAGCAATAACAATTTCCATGGTATATTGCCTCAGGAATTGGCTCGTTTGCGTCAGTTGAAGTTTATCAGCTTGGGAAACAACAAGTTCATGAGAGTCATTCCGTCATGGTTTGGGTCCTTATTCAAACTTCAAGTATTCAGTTTGTTTGGTAATCAATTTTCAGGTTCCATACTTGCTACAACCTTCAACTTATCTGCTTTGCAAAAAATAGATCTGAGTGACAACCAACTCTCAGGTCCTATACCATATGAGATTGGTTATCTTCCAAATTTAGAGGAATTGTCGCTCTATCAAAATAATCTAAATGGCCATATCCCATCCTCAATCTTCAATATGTCCACAATAACAGGATTATATCTTGCCCTCTATCAGCTTTCAGGTAGCCTCCCAGCAGACATAGGCCTTGCGCTTCCAAAACTAGAAGAGTTTGGAGCAGGATCGAATCACCTCAGTGGAGTAATCCCCAAATCCATCTCCAATGCTTCTAAGCTTCGGATTCTAGACCTGGGAGGTAACTCTTTTTCTGGATTTATTCCAACCACTCTGTGCCTCTTGACAAACCTTGAATGGGTCAGTTGCTTCGACAATAATTTGACCATTGATGCCTCTACTCCAGAAGTTAATATTTTTTCTTGTCTGCCAAATCTTAGAAATTTGAGGTTTTTAGCCTTCTTAAGCAATCCATTAAACGCGAAGCTTTCGATTTCCTTCAGTAATTTCTCTGCATCACTTCAAACTCTTTTTTAG

Protein Analysis

340

Amino Acids

37.24

Weight (kDa)

6.94

Isoelectric Point (pI)

30.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 18 - 56 7.7e-10 Leucine rich repeat N-terminal domain
LRR_14 PF23598 67 - 163 1.2e-07 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 968
AccIII TCCGGA 1 cut(s) 235
AclWI GGATC 1 cut(s) 721
AcoI YGGCCR 1 cut(s) 583
AcsI RAATTY 2 cut(s) 544, 928
AcuI CTGAAG 2 cut(s) 259, 970
AdeI CACNNNGTG 1 cut(s) 822
AfiI CCNNNNNNNGG 2 cut(s) 242, 844
AflII CTTAAG 1 cut(s) 949
AgsI TTSAA 7 cut(s) 334, 400, 407, 463, 607, 842, 1010
AjnI CCWGG 1 cut(s) 780
AleI CACNNNNGTG 1 cut(s) 726
AluBI AGCT 6 cut(s) 12, 40, 345, 649, 766, 973
AluI AGCT 6 cut(s) 12, 40, 345, 649, 766, 973
Alw21I GWGCWC 1 cut(s) 175
Alw26I GTCTC 1 cut(s) 221
Alw44I GTGCAC 1 cut(s) 171
AlwI GGATC 1 cut(s) 721
Aor13HI TCCGGA 1 cut(s) 235
AoxI GGCC 2 cut(s) 583, 676
ApaLI GTGCAC 1 cut(s) 171
ApeKI GCWGC 2 cut(s) 12, 26
ApoI RAATTY 2 cut(s) 544, 928
AspLEI GCGC 1 cut(s) 685
AspS9I GGNCC 2 cut(s) 390, 512
AsuHPI GGTGA 4 cut(s) 40, 82, 109, 713
AvaII GGWCC 2 cut(s) 390, 512
AxyI CCTNAGG 1 cut(s) 306
BaeGI GKGCMC 1 cut(s) 175
BalI TGGCCA 1 cut(s) 585
Bbv12I GWGCWC 1 cut(s) 175
BbvI GCAGC 1 cut(s) 38
BccI CCATC 3 cut(s) 186, 601, 755
BceAI ACGGC 1 cut(s) 39
BciT130I CCWGG 1 cut(s) 782
BcoDI GTCTC 1 cut(s) 221
BfaI CTAG 3 cut(s) 9, 695, 776
BfrI CTTAAG 1 cut(s) 949
BglII AGATCT 1 cut(s) 487
BisI GCNGC 2 cut(s) 13, 27
BlsI GCNGC 2 cut(s) 14, 28
Bme1390I CCNGG 1 cut(s) 782
Bme18I GGWCC 2 cut(s) 390, 512
BmgT120I GGNCC 2 cut(s) 390, 512
BmiI GGNNCC 2 cut(s) 391, 442
BmrFI CCNGG 1 cut(s) 782
BmrI ACTGGG 1 cut(s) 160
BmsI GCATC 2 cut(s) 868, 1010
BmuI ACTGGG 1 cut(s) 160
BpmI CTGGAG 1 cut(s) 873
BsaI GGTCTC 1 cut(s) 221
BsaJI CCNNGG 2 cut(s) 292, 781
BsaWI WCCGGW 1 cut(s) 235
BsaXI ACNNNNNCTCC 4 cut(s) 121, 151, 217, 247
Bsc4I CCNNNNNNNGG 2 cut(s) 242, 844
Bse1I ACTGG 4 cut(s) 58, 93, 128, 155
Bse21I CCTNAGG 1 cut(s) 306
BseAI TCCGGA 1 cut(s) 235
BseBI CCWGG 1 cut(s) 782
BseDI CCNNGG 2 cut(s) 292, 781
BseGI GGATG 1 cut(s) 593
BseLI CCNNNNNNNGG 2 cut(s) 242, 844
BseMII CTCAG 4 cut(s) 320, 482, 522, 739
BseNI ACTGG 4 cut(s) 58, 93, 128, 155
BseSI GKGCMC 1 cut(s) 175
BseXI GCAGC 1 cut(s) 38
BseYI CCCAGC 1 cut(s) 664
Bsh1236I CGCG 1 cut(s) 968
BshFI GGCC 2 cut(s) 585, 678
BsiHKAI GWGCWC 1 cut(s) 175
BsiSI CCGG 1 cut(s) 236
BslI CCNNNNNNNGG 2 cut(s) 242, 844
BsmAI GTCTC 1 cut(s) 221
BsnI GGCC 2 cut(s) 585, 678
Bso31I GGTCTC 1 cut(s) 221
Bsp1286I GDGCHC 1 cut(s) 175
Bsp13I TCCGGA 1 cut(s) 235
Bsp143I GATC 3 cut(s) 111, 487, 713
Bsp19I CCATGG 1 cut(s) 292
BspANI GGCC 2 cut(s) 585, 678
BspCNI CTCAG 4 cut(s) 319, 483, 521, 738
BspEI TCCGGA 1 cut(s) 235
BspFNI CGCG 1 cut(s) 968
BspHI TCATGA 1 cut(s) 363
BspLI GGNNCC 2 cut(s) 391, 442
BspPI GGATC 1 cut(s) 721
BspQI GCTCTTC 1 cut(s) 72
BspTI CTTAAG 1 cut(s) 949
BspTNI GGTCTC 1 cut(s) 221
BsrI ACTGG 4 cut(s) 58, 93, 128, 155
BssECI CCNNGG 2 cut(s) 292, 781
BssMI GATC 3 cut(s) 111, 487, 713
BssT1I CCWWGG 1 cut(s) 292
Bst2UI CCWGG 1 cut(s) 782
Bst6I CTCTTC 2 cut(s) 72, 693
BstAFI CTTAAG 1 cut(s) 949
BstC8I GCNNGC 1 cut(s) 175
BstDEI CTNAG 6 cut(s) 306, 491, 508, 725, 762, 923
BstDSI CCRYGG 1 cut(s) 292
BstF5I GGATG 1 cut(s) 593
BstFNI CGCG 1 cut(s) 968
BstHHI GCGC 1 cut(s) 685
BstKTI GATC 3 cut(s) 114, 490, 716
BstMAI GTCTC 1 cut(s) 221
BstMBI GATC 3 cut(s) 111, 487, 713
BstMWI GCNNNNNNNGC 2 cut(s) 71, 80
BstNI CCWGG 1 cut(s) 782
BstSCI CCNGG 1 cut(s) 780
BstSLI GKGCMC 1 cut(s) 175
BstUI CGCG 1 cut(s) 968
BstV1I GCAGC 1 cut(s) 38
BstX2I RGATCY 1 cut(s) 487
BstYI RGATCY 1 cut(s) 487
Bsu36I CCTNAGG 1 cut(s) 306
BsuRI GGCC 2 cut(s) 585, 678
BtgI CCRYGG 1 cut(s) 292
BtsCI GGATG 1 cut(s) 593
BtsIMutI CAGTG 2 cut(s) 100, 733
Cac8I GCNNGC 1 cut(s) 175
CciI TCATGA 1 cut(s) 363
CfoI GCGC 1 cut(s) 685
Cfr13I GGNCC 2 cut(s) 390, 512
CseI GACGC 1 cut(s) 314
CviAII CATG 4 cut(s) 109, 293, 364, 381
DdeI CTNAG 6 cut(s) 306, 491, 508, 725, 762, 923
DpnI GATC 3 cut(s) 113, 489, 715
DpnII GATC 3 cut(s) 111, 487, 713
DraIII CACNNNGTG 1 cut(s) 822
EaeI YGGCCR 1 cut(s) 583
Eam1104I CTCTTC 2 cut(s) 72, 693
EarI CTCTTC 2 cut(s) 72, 693
Eco130I CCWWGG 1 cut(s) 292
Eco147I AGGCCT 1 cut(s) 678
Eco31I GGTCTC 1 cut(s) 221
Eco47I GGWCC 2 cut(s) 390, 512
Eco57I CTGAAG 2 cut(s) 259, 970
Eco81I CCTNAGG 1 cut(s) 306
EcoO109I RGGNCCY 2 cut(s) 390, 512
EcoRII CCWGG 1 cut(s) 780
EcoT14I CCWWGG 1 cut(s) 292
ErhI CCWWGG 1 cut(s) 292
FaeI CATG 4 cut(s) 112, 296, 367, 384
FatI CATG 4 cut(s) 108, 292, 363, 380
FauNDI CATATG 1 cut(s) 523
Fnu4HI GCNGC 2 cut(s) 13, 27
FokI GGATG 1 cut(s) 580
Fsp4HI GCNGC 2 cut(s) 13, 27
FspBI CTAG 3 cut(s) 9, 695, 776
GlaI GCGC 1 cut(s) 684
GluI GCNGC 2 cut(s) 13, 27
GsaI CCCAGC 1 cut(s) 668
GsuI CTGGAG 1 cut(s) 873
HaeIII GGCC 2 cut(s) 585, 678
HapII CCGG 1 cut(s) 236
HgaI GACGC 1 cut(s) 314
HhaI GCGC 1 cut(s) 685
Hin1II CATG 4 cut(s) 112, 296, 367, 384
Hin6I GCGC 1 cut(s) 683
HinP1I GCGC 1 cut(s) 683
HincII GTYRAC 1 cut(s) 129
HindII GTYRAC 1 cut(s) 129
HindIII AAGCTT 3 cut(s) 38, 764, 971
HinfI GANTC 4 cut(s) 186, 369, 718, 772
HpaII CCGG 1 cut(s) 236
HphI GGTGA 4 cut(s) 40, 82, 109, 713
Hpy166II GTNNAC 3 cut(s) 129, 173, 615
Hpy188I TCNGA 2 cut(s) 492, 771
Hpy188III TCNNGA 7 cut(s) 236, 308, 364, 776, 801, 829, 890
Hpy8I GTNNAC 3 cut(s) 129, 173, 615
HpyAV CCTTC 3 cut(s) 469, 955, 994
HpyCH4V TGCA 4 cut(s) 147, 173, 478, 1001
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 80
HpyF3I CTNAG 6 cut(s) 306, 491, 508, 725, 762, 923
Hsp92II CATG 4 cut(s) 112, 296, 367, 384
HspAI GCGC 1 cut(s) 683
Kpn2I TCCGGA 1 cut(s) 235
Kzo9I GATC 3 cut(s) 111, 487, 713
LguI GCTCTTC 1 cut(s) 72
LmnI GCTCC 1 cut(s) 707
Lsp1109I GCAGC 1 cut(s) 38
LweI GCATC 2 cut(s) 868, 1010
MaeI CTAG 3 cut(s) 9, 695, 776
MaeIII GTNAC 4 cut(s) 95, 160, 494, 788
MalI GATC 3 cut(s) 113, 489, 715
MboI GATC 3 cut(s) 111, 487, 713
MboII GAAGA 5 cut(s) 59, 106, 530, 595, 710
MflI RGATCY 1 cut(s) 487
MhlI GDGCHC 1 cut(s) 175
MlsI TGGCCA 1 cut(s) 585
MluCI AATT 8 cut(s) 286, 311, 431, 544, 554, 865, 928, 991
MluNI TGGCCA 1 cut(s) 585
MlyI GAGTC 2 cut(s) 195, 378
MmeI TCCRAC 1 cut(s) 836
Mox20I TGGCCA 1 cut(s) 585
MroI TCCGGA 1 cut(s) 235
MscI TGGCCA 1 cut(s) 585
MseI TTAA 7 cut(s) 17, 42, 197, 264, 897, 950, 962
MslI CAYNNNNRTG 1 cut(s) 726
Msp20I TGGCCA 1 cut(s) 585
MspCI CTTAAG 1 cut(s) 949
MspI CCGG 1 cut(s) 236
MspR9I CCNGG 1 cut(s) 782
MvaI CCWGG 1 cut(s) 782
MvnI CGCG 1 cut(s) 968
MwoI GCNNNNNNNGC 2 cut(s) 71, 80
NcoI CCATGG 1 cut(s) 292
NdeI CATATG 1 cut(s) 523
NdeII GATC 3 cut(s) 111, 487, 713
NlaIII CATG 4 cut(s) 112, 296, 367, 384
NlaIV GGNNCC 2 cut(s) 391, 442
NmuCI GTSAC 3 cut(s) 95, 160, 494
OliI CACNNNNGTG 1 cut(s) 726
PagI TCATGA 1 cut(s) 363
PceI AGGCCT 1 cut(s) 678
PciSI GCTCTTC 1 cut(s) 72
PcsI WCGNNNNNNNCGW 1 cut(s) 181
PfeI GAWTC 2 cut(s) 718, 772
PkrI GCNGC 2 cut(s) 14, 28
PleI GAGTC 2 cut(s) 194, 377
PpsI GAGTC 2 cut(s) 194, 377
PpuMI RGGWCCY 2 cut(s) 390, 512
Psp5II RGGWCCY 2 cut(s) 390, 512
Psp6I CCWGG 1 cut(s) 780
PspFI CCCAGC 1 cut(s) 664
PspGI CCWGG 1 cut(s) 780
PspN4I GGNNCC 2 cut(s) 391, 442
PspPI GGNCC 2 cut(s) 390, 512
PspPPI RGGWCCY 2 cut(s) 390, 512
PsuI RGATCY 1 cut(s) 487
RseI CAYNNNNRTG 1 cut(s) 726
SapI GCTCTTC 1 cut(s) 72
SaqAI TTAA 7 cut(s) 17, 42, 197, 264, 897, 950, 962
SatI GCNGC 2 cut(s) 13, 27
Sau3AI GATC 3 cut(s) 111, 487, 713
Sau96I GGNCC 2 cut(s) 390, 512
SchI GAGTC 2 cut(s) 195, 378
ScrFI CCNGG 1 cut(s) 782
SduI GDGCHC 1 cut(s) 175
SfaNI GCATC 2 cut(s) 868, 1010
SinI GGWCC 2 cut(s) 390, 512
SmiMI CAYNNNNRTG 1 cut(s) 726
SmlI CTYRAG 1 cut(s) 949
SmoI CTYRAG 1 cut(s) 949
Sse9I AATT 8 cut(s) 286, 311, 431, 544, 554, 865, 928, 991
SseBI AGGCCT 1 cut(s) 678
SspI AATATT 1 cut(s) 901
SspMI CTAG 3 cut(s) 9, 695, 776
StuI AGGCCT 1 cut(s) 678
StyD4I CCNGG 1 cut(s) 780
StyI CCWWGG 1 cut(s) 292
TaqI TCGA 4 cut(s) 184, 716, 858, 977
TasI AATT 8 cut(s) 286, 311, 431, 544, 554, 865, 928, 991
TfiI GAWTC 2 cut(s) 718, 772
Tru1I TTAA 7 cut(s) 17, 42, 197, 264, 897, 950, 962
Tru9I TTAA 7 cut(s) 17, 42, 197, 264, 897, 950, 962
TscAI CASTG 2 cut(s) 100, 733
TseFI GTSAC 3 cut(s) 95, 160, 494
TseI GCWGC 2 cut(s) 12, 26
Tsp45I GTSAC 3 cut(s) 95, 160, 494
TspDTI ATGAA 1 cut(s) 352
TspGWI ACGGA 1 cut(s) 366
TspRI CASTG 2 cut(s) 100, 733
Vha464I CTTAAG 1 cut(s) 949
VneI GTGCAC 1 cut(s) 171
VpaK11BI GGWCC 2 cut(s) 390, 512
XapI RAATTY 2 cut(s) 544, 928
XbaI TCTAGA 1 cut(s) 775
XspI CTAG 3 cut(s) 9, 695, 776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.