Rh5CG093700

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
7435173 .. 7435748
576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG093700.1

Sequence Viewer

Length: 576 bp
ATGGAAGCAATCTTAATACTTACCGGCGGCGTCTCCTGTAACTCTTCGACCTCGACCTCTTCTTGGTTTTACTGTCTCAACGACTGCATATTCCACACATTTTGCACATCCAAATCATCTGCAAGACTGCAACCATATTCATCTATACAATGGAGACTGGAGAGCACTTGGTTCTTCCTTGTCTACTCTTGTTGTATGGCGGCTACCTGCTTAACTATGGCAGCACCACAGACCAATATCACCATATATCAATATGCTCTTCTTGCTCTCAAAGCCCGTATCACTAGTGATCCTCGTAACTTGATCTTCACCAATTGGTCAACCACCACTCCTATTTGCAATTGGGTTGGCGTTACTTGTGGTGCACGCCACCTTAGAGCCGCAACCTTGAACCTCTCATACTTTGGTCTCGCATGCACCATTCCTCCGAAGTTAGGCAACCTATCATTTCTTGTGGATCTGGACATCACAAATAACAACTTTCACCGTTTCTTACCCCAAGAATTGGCTTGCCTGCGCCGGTTGAAACTTATTAGCTTGGGATACAACAAGTTTACAGGAATGTTTCCAGCATGA

Protein Analysis

191

Amino Acids

21.4

Weight (kDa)

8.93

Isoelectric Point (pI)

46.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 86 - 120 2.6e-09 Leucine rich repeat N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000229)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13780 FvH4_1g13790 FvH4_3g37750
malus_domestica MD00G1192800.v1.1 MD02G1291700.v1.1 MD03G1180500.v1.1 MD03G1181600.v1.1 MD03G1181700.v1.1 MD03G1181900.v1.1 MD03G1182700.v1.1 MD03G1281400.v1.1 MD05G1297800.v1.1 MD05G1298300.v1.1 MD07G1034800.v1.1 MD10G1265200.v1.1 MD10G1277500.v1.1
prunus_persica Prupe.4G063500_v2.0.a1 Prupe.6G160500_v2.0.a1
pyrus_communis pycom04g04980 pycom05g27570 pycom05g27590 pycom10g25090
rosa_chinensis RchiOBHm_Chr2g0113621 RchiOBHm_Chr2g0113671 RchiOBHm_Chr2g0113771 RchiOBHm_Chr2g0113871 RchiOBHm_Chr2g0114031 RchiOBHm_Chr2g0114181 RchiOBHm_Chr2g0114201 RchiOBHm_Chr2g0114231 RchiOBHm_Chr2g0114241 RchiOBHm_Chr4g0403181 RchiOBHm_Chr4g0404251 RchiOBHm_Chr4g0404291 RchiOBHm_Chr4g0404471 RchiOBHm_Chr5g0010961 RchiOBHm_Chr5g0010971 RchiOBHm_Chr5g0010981 RchiOBHm_Chr5g0011131 RchiOBHm_Chr5g0011311 RchiOBHm_Chr5g0011321 RchiOBHm_Chr5g0011361 RchiOBHm_Chr5g0016031 RchiOBHm_Chr5g0040141 RchiOBHm_Chr5g0040411 RchiOBHm_Chr5g0040471 RchiOBHm_Chr5g0059151 RchiOBHm_Chr5g0059191 RchiOBHm_Chr6g0251861 RchiOBHm_Chr7g0213311 RchiOBHm_Chr7g0213321
rosa_laevigata RLG00000009001 RLG00000009062 RLG00000018075 RLG00000018085 RLG00000018097 RLG00000031818 RLG00000034199
rosa_multiflora Rmu_co7972198.1_g000001 Rmu_co8328773.1_g000001 Rmu_sc0000929.1_g000033 Rmu_sc0001023.1_g000056 Rmu_sc0001699.1_g000007 Rmu_sc0003151.1_g000028 Rmu_sc0003242.1_g000010 Rmu_sc0004283.1_g000012 Rmu_sc0004283.1_g000036 Rmu_sc0004283.1_g000048 Rmu_sc0004283.1_g000066 Rmu_sc0005187.1_g000011 Rmu_sc0007010.1_g000008 Rmu_sc0007109.1_g000001 Rmu_sc0008397.1_g000007 Rmu_sc0009151.1_g000001 Rmu_sc0009639.1_g000020 Rmu_sc0009975.1_g000007 Rmu_sc0009975.1_g000010 Rmu_sc0010543.1_g000006 Rmu_sc0011398.1_g000001 Rmu_sc0011941.1_g000025 Rmu_sc0013141.1_g000002 Rmu_sc0016457.1_g000002 Rmu_sc0038501.1_g000001 Rmu_ssc0000303.1_g000008
rosa_roxburghii Rroxscaffold_1G00040180 Rroxscaffold_1G00040280 Rroxscaffold_1G00040900 Rroxscaffold_1G00064830 Rroxscaffold_1G00065410 Rroxscaffold_2G00130010 Rroxscaffold_2G00130040
rosa_rugosa Rorug02G0188500 Rorug02G0188800 Rorug02G0188900 Rorug02G0189500 Rorug04G0458400 Rorug05G0184800
rosa_samantha Rh1CG253300 Rh2CG247500 Rh2CG247600 Rh2CG247900 Rh2CG248300 Rh2CG249100 Rh2CG249400 Rh2CG249800 Rh2CG249900 Rh2CG250000 Rh2CG250100 Rh2CG250200 Rh2CG262700 Rh4AG118100 Rh4AG118300 Rh4AG364100 Rh4BG106900 Rh4CG125100 Rh4DG110100 Rh4DG110500 Rh4DG110600 Rh4DG369800 Rh5CG093500 Rh5CG093600 Rh5CG093700 Rh5CG095300 Rh5CG095500 Rh5CG096100 Rh5CG096200 Rh5CG096400 Rh5CG099600 Rh5CG134600 Rh5CG421300 Rh6DG142900 Rh7AG370200
rosa_wichuraiana Rw0G001470 Rw0G014660 Rw0G017510 Rw0G017750 Rw1G005500 Rw2G018440 Rw2G018460 Rw2G018490 Rw2G019150 Rw4G009550 Rw5G007590 Rw5G007860 Rw6G001510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 215
AccB7I CCANNNNNTGG 1 cut(s) 505
AccI GTMKAC 1 cut(s) 183
AciI CCGC 3 cut(s) 27, 200, 381
AclWI GGATC 2 cut(s) 284, 465
AcyI GRCGYC 1 cut(s) 30
AfiI CCNNNNNNNGG 3 cut(s) 63, 434, 505
AgsI TTSAA 2 cut(s) 391, 526
AhlI ACTAGT 1 cut(s) 284
AluBI AGCT 1 cut(s) 537
AluI AGCT 1 cut(s) 537
Alw21I GWGCWC 2 cut(s) 167, 367
Alw26I GTCTC 4 cut(s) 37, 80, 148, 413
Alw44I GTGCAC 1 cut(s) 363
AlwI GGATC 2 cut(s) 284, 465
ApaLI GTGCAC 1 cut(s) 363
ApeKI GCWGC 1 cut(s) 221
AspLEI GCGC 1 cut(s) 519
AsuHPI GGTGA 3 cut(s) 232, 301, 476
BaeGI GKGCMC 1 cut(s) 367
Bbv12I GWGCWC 2 cut(s) 167, 367
BbvI GCAGC 1 cut(s) 233
BciVI GTATCC 1 cut(s) 536
BcoDI GTCTC 4 cut(s) 37, 80, 148, 413
BcuI ACTAGT 1 cut(s) 284
BfaI CTAG 1 cut(s) 285
BfuAI ACCTGC 1 cut(s) 215
BfuI GTATCC 1 cut(s) 536
BisI GCNGC 4 cut(s) 28, 201, 222, 381
BlsI GCNGC 4 cut(s) 29, 202, 223, 382
BpmI CTGGAG 1 cut(s) 179
BsaHI GRCGYC 1 cut(s) 30
BsaI GGTCTC 1 cut(s) 413
BsaXI ACNNNNNCTCC 4 cut(s) 313, 343, 409, 439
Bsc4I CCNNNNNNNGG 3 cut(s) 63, 434, 505
Bse118I RCCGGY 2 cut(s) 23, 519
Bse1I ACTGG 1 cut(s) 162
BseGI GGATG 1 cut(s) 107
BseLI CCNNNNNNNGG 3 cut(s) 63, 434, 505
BseNI ACTGG 1 cut(s) 162
BseSI GKGCMC 1 cut(s) 367
BseXI GCAGC 1 cut(s) 233
BsiHKAI GWGCWC 2 cut(s) 167, 367
BsiSI CCGG 2 cut(s) 24, 520
BslI CCNNNNNNNGG 3 cut(s) 63, 434, 505
BsmAI GTCTC 4 cut(s) 37, 80, 148, 413
BsmBI CGTCTC 1 cut(s) 37
Bso31I GGTCTC 1 cut(s) 413
Bsp1286I GDGCHC 2 cut(s) 167, 367
Bsp143I GATC 3 cut(s) 289, 303, 457
BspACI CCGC 3 cut(s) 27, 200, 381
BspMI ACCTGC 1 cut(s) 215
BspPI GGATC 2 cut(s) 284, 465
BspQI GCTCTTC 1 cut(s) 264
BspTNI GGTCTC 1 cut(s) 413
BsrFI RCCGGY 2 cut(s) 23, 519
BsrI ACTGG 1 cut(s) 162
BssAI RCCGGY 2 cut(s) 23, 519
BssMI GATC 3 cut(s) 289, 303, 457
BssNI GRCGYC 1 cut(s) 30
Bst4CI ACNGT 2 cut(s) 74, 488
Bst6I CTCTTC 3 cut(s) 49, 64, 264
BstACI GRCGYC 1 cut(s) 30
BstC8I GCNNGC 4 cut(s) 367, 415, 511, 515
BstDEI CTNAG 1 cut(s) 374
BstF5I GGATG 1 cut(s) 107
BstHHI GCGC 1 cut(s) 519
BstKTI GATC 3 cut(s) 292, 306, 460
BstMAI GTCTC 4 cut(s) 37, 80, 148, 413
BstMBI GATC 3 cut(s) 289, 303, 457
BstMWI GCNNNNNNNGC 2 cut(s) 263, 272
BstNSI RCATGY 1 cut(s) 417
BstSLI GKGCMC 1 cut(s) 367
BstV1I GCAGC 1 cut(s) 233
BstX2I RGATCY 1 cut(s) 457
BstYI RGATCY 1 cut(s) 457
BsuI GTATCC 1 cut(s) 536
BtsCI GGATG 1 cut(s) 107
BveI ACCTGC 1 cut(s) 215
Cac8I GCNNGC 4 cut(s) 367, 415, 511, 515
CfoI GCGC 1 cut(s) 519
Cfr10I RCCGGY 2 cut(s) 23, 519
CseI GACGC 1 cut(s) 19
CspCI CAANNNNNGTGG 2 cut(s) 83, 118
CviAII CATG 2 cut(s) 414, 573
CviJI RGCY 5 cut(s) 203, 275, 380, 509, 537
CviKI_1 RGCY 5 cut(s) 203, 275, 380, 509, 537
DdeI CTNAG 1 cut(s) 374
DpnI GATC 3 cut(s) 291, 305, 459
DpnII GATC 3 cut(s) 289, 303, 457
Eam1104I CTCTTC 3 cut(s) 49, 64, 264
EarI CTCTTC 3 cut(s) 49, 64, 264
Eco31I GGTCTC 1 cut(s) 413
Esp3I CGTCTC 1 cut(s) 37
FaeI CATG 2 cut(s) 417, 576
FatI CATG 2 cut(s) 413, 572
FblI GTMKAC 1 cut(s) 183
Fnu4HI GCNGC 4 cut(s) 28, 201, 222, 381
FokI GGATG 1 cut(s) 94
Fsp4HI GCNGC 4 cut(s) 28, 201, 222, 381
FspBI CTAG 1 cut(s) 285
GlaI GCGC 1 cut(s) 518
GluI GCNGC 4 cut(s) 28, 201, 222, 381
GsuI CTGGAG 1 cut(s) 179
HapII CCGG 2 cut(s) 24, 520
HgaI GACGC 1 cut(s) 19
HhaI GCGC 1 cut(s) 519
Hin1I GRCGYC 1 cut(s) 30
Hin1II CATG 2 cut(s) 417, 576
Hin6I GCGC 1 cut(s) 517
HinP1I GCGC 1 cut(s) 517
HincII GTYRAC 1 cut(s) 321
HindII GTYRAC 1 cut(s) 321
HpaII CCGG 2 cut(s) 24, 520
HphI GGTGA 3 cut(s) 232, 301, 476
Hpy166II GTNNAC 4 cut(s) 184, 321, 365, 555
Hpy188I TCNGA 1 cut(s) 429
Hpy188III TCNNGA 1 cut(s) 461
Hpy8I GTNNAC 4 cut(s) 184, 321, 365, 555
HpyCH4III ACNGT 2 cut(s) 74, 488
HpyCH4V TGCA 7 cut(s) 87, 105, 122, 130, 339, 365, 417
HpyF10VI GCNNNNNNNGC 2 cut(s) 263, 272
HpyF3I CTNAG 1 cut(s) 374
Hsp92I GRCGYC 1 cut(s) 30
Hsp92II CATG 2 cut(s) 417, 576
HspAI GCGC 1 cut(s) 517
Kzo9I GATC 3 cut(s) 289, 303, 457
LguI GCTCTTC 1 cut(s) 264
LpnPI CCDG 8 cut(s) 37, 49, 143, 220, 446, 527, 533, 543
Lsp1109I GCAGC 1 cut(s) 233
MaeI CTAG 1 cut(s) 285
MaeIII GTNAC 3 cut(s) 38, 296, 352
MalI GATC 3 cut(s) 291, 305, 459
MboI GATC 3 cut(s) 289, 303, 457
MboII GAAGA 5 cut(s) 36, 51, 166, 251, 298
MfeI CAATTG 2 cut(s) 313, 340
MflI RGATCY 1 cut(s) 457
MhlI GDGCHC 2 cut(s) 167, 367
MluCI AATT 3 cut(s) 313, 340, 503
MnlI CCTC 5 cut(s) 61, 67, 303, 404, 435
MseI TTAA 2 cut(s) 14, 212
MspI CCGG 2 cut(s) 24, 520
MunI CAATTG 2 cut(s) 313, 340
MwoI GCNNNNNNNGC 2 cut(s) 263, 272
NdeII GATC 3 cut(s) 289, 303, 457
NlaIII CATG 2 cut(s) 417, 576
NspI RCATGY 1 cut(s) 417
PaeI GCATGC 1 cut(s) 417
PciSI GCTCTTC 1 cut(s) 264
PflMI CCANNNNNTGG 1 cut(s) 505
PkrI GCNGC 4 cut(s) 29, 202, 223, 382
PsrI GAACNNNNNNTAC 2 cut(s) 383, 415
PsuI RGATCY 1 cut(s) 457
SapI GCTCTTC 1 cut(s) 264
SaqAI TTAA 2 cut(s) 14, 212
SatI GCNGC 4 cut(s) 28, 201, 222, 381
Sau3AI GATC 3 cut(s) 289, 303, 457
SduI GDGCHC 2 cut(s) 167, 367
SetI ASST 8 cut(s) 53, 59, 209, 375, 389, 396, 444, 539
SpeI ACTAGT 1 cut(s) 284
SphI GCATGC 1 cut(s) 417
Sse9I AATT 3 cut(s) 313, 340, 503
SsiI CCGC 3 cut(s) 27, 200, 381
SspMI CTAG 1 cut(s) 285
TaaI ACNGT 2 cut(s) 74, 488
TaqI TCGA 2 cut(s) 47, 53
TasI AATT 3 cut(s) 313, 340, 503
TauI GCSGC 3 cut(s) 30, 203, 383
Tru1I TTAA 2 cut(s) 14, 212
Tru9I TTAA 2 cut(s) 14, 212
TseI GCWGC 1 cut(s) 221
TspDTI ATGAA 1 cut(s) 129
Van91I CCANNNNNTGG 1 cut(s) 505
VneI GTGCAC 1 cut(s) 363
XceI RCATGY 1 cut(s) 417
XmiI GTMKAC 1 cut(s) 183
XspI CTAG 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.